Trachemys scripta elegans (red-eared slider): 117877339
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Entry
117877339 CDS
T07347
Symbol
LRP5
Name
(RefSeq) low-density lipoprotein receptor-related protein 5 isoform X1
KO
K03068
low density lipoprotein receptor-related protein 5/6
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04150
mTOR signaling pathway
tst04310
Wnt signaling pathway
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04310 Wnt signaling pathway
117877339 (LRP5)
04150 mTOR signaling pathway
117877339 (LRP5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117877339 (LRP5)
Membrane trafficking [BR:
tst04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
117877339 (LRP5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_b
FXa_inhibition
Ldl_recept_a
DUF5050
Vgb_lyase
EGF_LRP2
SGL
EGF
cEGF
Insulin_TMD
Motif
Other DBs
NCBI-GeneID:
117877339
NCBI-ProteinID:
XP_034626253
LinkDB
All DBs
Position
4:complement(110231024..110507250)
Genome browser
AA seq
1615 aa
AA seq
DB search
MEAAAPPPLLLLLAAAVLQCHLGSLRASPLLLFANRRDVRLVDAGGVKPESTIVVSGLED
AAAVDFQYSQGIVYWTDVSEEAIKQTYLNQTGNIVQNVIISGLVSPDGLACDWIGKKLYW
TDSETNRIEVANLNGTSRKVLFWQDLDQPRAVALDPAHGYMYWTDWGETPRIERAGMDSS
TRKIIVNSDIYWPNGLTIDLDEQKLYWADAKLSFIHRANLDGSFRQKVVEGSLTHPFALT
LSGETLYWTDWQTRSIHACDKRTGEKKREILNALYSPMDIQVLSPERQPYFHTPCEENNG
GCSHLCLLSPRDPFYSCACPTGVQLEDDGKTCKAGAEEVLLLARRTDLRRISLDMPDFTD
IILQIDNIRHAIAIDYDPVEGYIYWTDDDVRAIRRAYLDGSGAQTLVTTEINHPDGIAVD
WVARNLYWTDTGTDRIEVTRLNGTSRKILISENLDEPRAIVLNPVMGYMYWTDWGENPKI
ECAYLDGSERRVLVNSSLGWPNGLALDLEEDKLYWGDAKTDKIEVINVDGTMRKTLLEDK
LPHIFGFTLLGDYIYWTDWQRRSIERVHKIRASRDIIIDQLPDLMGLKAASVTKVFGTNP
CAENNGGCSHLCFFTPLETRCACPIGLELLSDMKTCIIPEAFLVFTSRAAIHRISLETNN
NDVAIPLTGVKEASALDFDVSDNRIYWTDISLKTISRAFMNGSSVEHVIEFGLDYPEGMA
VDWMGKNLYWADTGTNRIEVARLDGQYRQVLVWKDLDNPRSLALDPTKGYMYWTEWGGKP
RIVRAYMDGTNSITLVDKVGRANDLTIDYADQRLYWTDLDTSMIESSNMLGQEREIIADD
LPHPFGLTQYSDYIYWTDWNLHSIERADKTNGKNRTLIQGHLDFVMDILVFHSSRQDGLN
DCMQNNGHCGQLCLAIPNGYRCGCASHYTLDPNSRNCSSPTSFLLFSQKSAISRMIPDDQ
QSPDIILPVHGLRNVKAIDYDPLDKLIYWVDGRQNIIKRAKDDGTQPFTVMSTPNQSQNP
EKQPHDLSIDIYSHTLYWTCEATNSISVHRLNGEPIGMVLKGDHDKPRAIVVNAERGYMY
FTNMQERAPKIERAALDGTEREVLFSTGLIRPVALVIDNKLGKLFWVDADLKRIESCDLS
GANRVTLEDSNILQPMGLTVLGNHLYWIDRQQQMIERVEKTSGYKRTRIQGRIAHLTGIH
AVEEVDMDEFSAHPCSRDNGGCSHICIAKGDGTPRCSCPDHLVLLQNLLTCGEPPTCSPD
QFTCATGEIDCIPMAWRCDGFPECDDRSDEDNCPICLAAQFQCEKGQCIDARLRCNGEID
CQDKSDEADCNTICLPNQFRCASGQCILIKQQCDSFPDCIDGSDELMCEKNTSSDEPQPH
VSAIGPVIGIILSLLVMGGMYFVCQRVVCQRYAGPNGPFPHEYVSGTPHVPLNFIAPGSS
QHGTFTGKDGISCGKSMISSMSLMGGSSGAPLYDRNHVTGASSSSSSSTKATFYPQILNP
PPSPATDRSLYNTEMFYSSNIPSTTRSYRPYLIRGIAPPTTPCSTDVCDSDYTTSRWKAN
KYYIDLNSDSDPYPPPPTPRSQYMSAEESCPPSPATERSYFHLYPPPPSPCTDSS
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atggaggcggcggccccgccgccgctgctgctcctgctggccgccgcggtgcttcagtgc
cacttgggctcgctgcgggcttctcctcttctgcttttcgccaatcgtcgggatgtcaga
ctggtggatgctggaggagtgaagccagagtccaccatagtggtcagcggcttagaagat
gccgcggcggttgattttcagtactcacaaggcattgtttactggacagacgtgagcgaa
gaagccatcaagcaaacgtacttgaaccaaactgggaatatagtgcagaatgtcattatt
tctggtctggtttctccggatggcctggcatgtgattggattgggaaaaagctgtattgg
acggactcagaaaccaataggatagaagttgctaatctcaatggaacatctagaaaagtc
ctcttctggcaagaccttgaccagccaagggcagttgccttggatccagcacatgggtac
atgtattggacggactggggagaaacacccagaatagaacgggcaggaatggatagcagc
actcgaaaaataattgttaattcagacatttattggcctaatggactcacgatagatctt
gatgagcagaagctgtactgggctgatgcaaagctgagtttcattcatagagcaaatctg
gatggttcctttaggcaaaaggttgtggaagggagtctcactcacccatttgcgctgaca
ctgtctggagagacgttgtattggacagactggcagactcgctccattcatgcctgtgac
aaaaggaccggagagaaaaagagagaaatactgaatgcactttactcaccgatggacatc
caagtcttgagtccagagcggcagccatactttcatactccctgcgaagaaaacaatgga
ggctgctctcacctttgcctgctgtctcccagagaccccttctacagctgtgcctgtccc
actggagtgcagctggaagatgatggcaagacctgtaaagcaggtgcagaggaagtcttg
ctgctcgctagaaggacagatttgcgaagaatctccttggacatgccagacttcactgac
attattctgcagatagacaatatcaggcatgcgattgcaatagactatgatcctgttgag
ggctacatatactggactgacgatgatgtccgggctattcgtcgggcttaccttgatggt
tctggagcacagaccctagtgaccacagaaattaatcatcctgatggcatagcagtggat
tgggtggcaaggaacctgtactggactgacacaggaacagatcgcattgaagtaacgcgg
ttgaatgggacatccagaaagatccttatatcggaaaatctagatgaacctagagcaata
gtgctaaatcctgtgatgggctacatgtattggacggactggggtgaaaatccaaagatc
gaatgtgcttatctggatggctcagagaggagggtcctagtgaacagttctctaggttgg
cctaatggcttggcactggatcttgaagaagacaaactctactggggagatgcaaagaca
gacaaaattgaagtaataaatgttgacggaacaatgagaaaaactctactagaagataag
cttcctcatatatttgggtttactttgctgggggactacatctactggacagactggcag
agacgaagtattgaaagagttcacaaaataagagcaagcagggatatcatcatagatcag
ttgccagacctaatgggcctcaaagcagcaagtgtgaccaaagtgtttggaaccaatcct
tgtgctgagaataatggaggctgcagccatctgtgttttttcacacctctggagactaga
tgtgcttgtcccataggactggagttgctgagcgacatgaagacctgcatcattcctgaa
gccttccttgttttcaccagcagagcagcaattcataggatttcccttgaaaccaacaat
aatgatgtagctattcctctaactggtgtcaaagaggcgtctgctctggattttgatgtg
tctgataatagaatctattggactgatattagcttaaagaccataagccgggcattcatg
aatgggagctctgttgagcatgtgattgagtttgggttagactaccctgagggaatggca
gtagactggatgggaaagaacctttactgggcagatactggaaccaatcgaattgaagta
gcgcgcctggatggacagtacaggcaggttcttgtgtggaaggatttggataacccaagg
tctttggctcttgatcctactaaaggttatatgtactggacagagtggggaggtaaacca
aggatcgttcgagcatatatggatgggacaaacagcatcactttggttgataaagtggga
cgtgccaatgatttaactattgactatgcagaccaaagactatattggactgacctagac
acaagtatgattgagtcatcaaacatgctaggtcaagaaagggaaataatagcagatgat
ctacctcatccatttggactaacacagtacagtgattacatctactggacagactggaac
cttcatagtatagaaagagcagacaagaccaatgggaagaaccggacactaattcaagga
catctggattttgtgatggacatattggtctttcactcttcgcgccaggatggcttgaat
gactgcatgcaaaacaatgggcactgtggacaattgtgccttgccataccaaatgggtat
agatgtgggtgtgcctctcactataccttggatcccaacagcagaaactgcagttcaccc
accagcttcttgctgtttagccagaagtctgcaatcagtcggatgataccagatgaccag
caaagtccagatatcattcttccggtgcatggtctaagaaatgtcaaggccattgattat
gatcccttagataaactgatttattgggtggatggacgtcagaacattattaaaagagcc
aaagatgatggtacccagcctttcactgtcatgagcactccaaaccaaagccaaaatcca
gagaagcagccgcatgacctgagtattgatatttacagccatacgttgtactggacctgt
gaggccacaaattcaatcagtgttcacagacttaatggagaaccaattggaatggtgtta
aaaggagatcatgacaagccaagagccatagtagtcaatgcagagcgagggtacatgtac
ttcaccaacatgcaagagcgagccccgaagatagagcgcgcagccctggacggcacggaa
cgagaagtgctctttagtaccgggctgatccgacctgtggcgctggtaattgacaacaag
cttgggaaactcttctgggtggacgcagatctcaaacgcattgaaagctgtgatttgtca
ggagctaaccgtgtaacactggaggactccaacattctgcagccaatgggactgactgtg
ttggggaatcacttgtactggattgaccgtcagcagcagatgattgagagagttgagaaa
accagtggatacaagaggactagaatccaaggccgaattgctcacttgacaggcattcat
gcagtggaagaagttgatatggatgaattttctgcacatccatgttcccgtgacaatggt
ggctgttcacacatctgcattgcaaaaggagatggaaccccaagatgctcatgcccagat
catcttgtacttttacagaacctcttaacatgtggagaacctccaacttgttccccagat
cagtttacctgtgcgactggggagatagactgtatcccaatggcatggcgatgtgatgga
tttccagaatgtgatgaccggagtgatgaagataactgtcctatatgcttagcagcccag
tttcagtgtgagaaaggacaatgtattgatgcccgcttgcggtgtaatggagaaattgac
tgccaagataaatctgacgaagcagactgcaatacaatctgtctcccaaatcagtttcga
tgtgccagtggccagtgcatcctcataaaacagcagtgtgactcctttccagattgcatc
gacggttccgatgaactcatgtgtgaaaaaaacacatcctcagatgaacctcaaccccac
gttagtgctattggacctgtcattggtatcatactgtcccttttggtcatgggaggaatg
tattttgtttgccagcgagtggtgtgtcagcgctatgctggacccaatggaccttttccg
catgaatatgttagcggaacccctcatgtccctcttaattttatagctccagggagttct
cagcatggcacttttactggtaaggatggcatctcttgtggaaagtctatgattagctcc
atgagcctcatgggaggaagtagcggtgcccctctgtatgacagaaaccatgttactgga
gcctcttctagtagttcatctagcactaaagccactttctacccacagattttgaaccca
cctccttccccagccactgatcgctccttatataacacagagatgttctattcatcaaac
attccttcaacaacaagatcttacagaccctaccttatacgagggatagctccgcccacg
acaccatgcagcacagatgtgtgcgacagcgactacaccacaagccggtggaaggccaac
aaatactacatagatctaaattcagactcagacccttatccccctccccccacgcctcgc
agccagtatatgtcagcagaagaaagctgccctccatctcctgccacagagcgaagctac
tttcacctctacccccctcctccgtctccttgtacagactcctcatga
DBGET
integrated database retrieval system
