Trachemys scripta elegans (red-eared slider): 117877356
Help
Entry
117877356 CDS
T07347
Symbol
IRF7
Name
(RefSeq) interferon regulatory factor 7 isoform X1
KO
K09447
interferon regulatory factor 7
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04620
Toll-like receptor signaling pathway
tst04621
NOD-like receptor signaling pathway
tst04622
RIG-I-like receptor signaling pathway
tst04623
Cytosolic DNA-sensing pathway
tst05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117877356 (IRF7)
04621 NOD-like receptor signaling pathway
117877356 (IRF7)
04622 RIG-I-like receptor signaling pathway
117877356 (IRF7)
04623 Cytosolic DNA-sensing pathway
117877356 (IRF7)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117877356 (IRF7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tst03000
]
117877356 (IRF7)
Transcription factors [BR:
tst03000
]
Eukaryotic type
Helix-turn-helix
Tryptophan clusters interferon-regulating factors
117877356 (IRF7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
IRF-3
IRF
MH2
Hormone_6
Motif
Other DBs
NCBI-GeneID:
117877356
NCBI-ProteinID:
XP_034626292
LinkDB
All DBs
Position
4:complement(111865926..111889897)
Genome browser
AA seq
622 aa
AA seq
DB search
MAASESEGGSQKLRFAFWLIKQINSENYEGLRWVDRDHTQFRIPWKHTSRKDINPNDYKI
FKAWAITSGKYNEKLKDLAKWKTNFRCAMRSTNMFLMVQDNSKTSEDPHKVYQYISPSPD
AVAAANAPTTKNNNLRASKEDISPHSEEAPHLHHHMPQQLQPQIELDLEMLSLENPPQEM
DSVQNERPVYDPGRNPPQDYTTNNSAPNGYQCSPNTLHWILQQCNLTQNGCSPQQLPWAL
EGGLDHGSGYPNQHIGQNSYPQQGSGVANGPVEDYHQSIGQWVTQTMAETQTMQNAYGPS
AASLLQQPLPSSTVPGTSQLLNNAAEVLFEGRPHLNNQSTFLSEAPAGNALIYPTLNGPE
ENSYHQLANQWAAPAVVEQNGFTQPAAPLPEQHPPPHTAPSRNNTETIPPNMDVTIYYRG
KPLHEVQVATSSFLFTYNNEDTTVVPGCAQVVQFPSPDELPDQKQVQFTRQLLLNTGLLL
EQKHKKIYAKRLNKCKVFWALSRQLANMAQNPEPKLLPRGTETEIFDYEVFSKELKDFKE
HQRAASPDFTIYLCFGQCFSKSKPKETMLILVKLVPKFCEYFHDMVLREGASSLNSGNVS
LQLSSCFNSLYDLIEQFNMQID
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atggctgcatccgagagcgaggggggttctcaaaaattacgatttgccttctggctgatt
aagcagatcaacagcgaaaactacgaggggctccgctgggtagacagggaccacactcag
tttcgcatcccctggaaacacacttccaggaaggatatcaaccctaacgattacaagatt
ttcaaggcctgggctataaccagcggaaagtacaacgaaaagctgaaagatctagccaag
tggaaaaccaacttccgctgtgccatgagaagcacaaacatgttcctgatggtgcaggat
aactcaaagacctctgaggaccctcacaaagtgtatcaatacatcagcccaagccccgat
gctgtggcagctgctaatgccccgactactaaaaacaataacctgcgtgccagtaaagaa
gacatcagcccccattctgaagaagcccctcatctgcaccaccatatgccacagcaactg
cagccgcagatagaattagatttggagatgttgtcgctggaaaaccctccccaagagatg
gatagcgtgcagaacgaaaggccagtctacgaccctggcaggaatcctccccaggactac
accaccaataattcggccccaaatggctaccagtgcagccccaacacactccactggatt
ctgcagcagtgcaacttaacccagaatggctgcagcccacagcagctgccgtgggctctg
gagggaggtttagatcacggttcaggctatccaaaccaacatattggccaaaatagctac
ccacagcaggggagcggggtggcaaatggaccagtggaggactatcaccaatcaattggc
cagtgggtgacccaaaccatggcagagacccaaaccatgcaaaatgcttatggcccttct
gctgcctcacttctccagcagcccctcccatccagcacagttcctggcacgagtcagctt
cttaataacgcagcggaagtcctgtttgaggggagacctcacctcaataaccaaagcact
ttcctgagtgaagcacctgcaggaaacgcactgatctatccaacactgaatggcccggaa
gagaacagttatcaccagctggcaaatcagtgggcagccccagcagtggtggagcagaac
gggttcacccagcctgctgcccctctcccagagcagcatcctcctccccacacagcgcca
tcgcggaacaatacagaaaccattcctcccaatatggacgtcaccatctattaccgaggg
aagccactccacgaggtgcaggtggccaccagcagcttcctgttcacgtacaataatgaa
gacaccaccgttgtcccgggctgcgcgcaggtggtccaattcccaagcccagatgagctg
cctgaccagaaacaggttcagttcaccaggcagctgctcctgaacacagggctgctgctg
gagcagaagcacaagaagatctatgccaagcgcctgaataaatgcaaggtcttctgggcc
ctctccaggcaactggcgaacatggctcagaaccctgagcccaagctgctgccacgtggc
acagagacggagatcttcgactatgaggtgttctcaaaggagctgaaggattttaaggaa
catcaaagggctgcatctcccgacttcaccatctacctttgctttgggcagtgcttctcc
aaatccaagcccaaggagaccatgttaatcctggtgaagctggtgcctaagttctgtgag
tatttccacgacatggtgctgcgggagggagcctcgtccctgaacagcgggaacgtgagc
ctccagctgtccagctgcttcaacagcttgtatgacctcattgagcagttcaacatgcag
attgactga
DBGET
integrated database retrieval system
