Trachemys scripta elegans (red-eared slider): 117877374
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Entry
117877374 CDS
T07347
Symbol
IGHMBP2
Name
(RefSeq) DNA-binding protein SMUBP-2
KO
K19036
ATP-dependent RNA/DNA helicase IGHMBP2 [EC:
5.6.2.5
5.6.2.3
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tst03009
]
117877374 (IGHMBP2)
03012 Translation factors [BR:
tst03012
]
117877374 (IGHMBP2)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117877374 (IGHMBP2)
5.6.2.5 RNA 5'-3' helicase
117877374 (IGHMBP2)
Ribosome biogenesis [BR:
tst03009
]
Eukaryotic type
Other ribosome biogenesis factors
117877374 (IGHMBP2)
Translation factors [BR:
tst03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
117877374 (IGHMBP2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SMUBP-2_HCS1_1B
R3H
AAA_19
AAA_30
zf-AN1
Helicase_RecD
ResIII
nSTAND3
AAA_16
DEAD
AAA_22
UvrD-helicase
AAA_25
SLFN-g3_helicase
IstB_IS21
AAA_33
Flavi_DEAD
Zot
ABC_tran
AAA
PhoH
AAA_18
RL
DnaB_C
VWA_2
ATPase
CbiA
SRP54
UvrD_C_2
AAA_31
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
117877374
NCBI-ProteinID:
XP_034626341
LinkDB
All DBs
Position
4:113139259..113227843
Genome browser
AA seq
989 aa
AA seq
DB search
MAVPDFVSRQLELLQEEREAEIEETRAWRESIFLKELQRRGVCLLKLQVASQRTGLYGRL
LVTFQPRKYDPEAELPCNSFGPGDIVGLYESAGQGDPLSTGIVTRITPKSVTVAFEESRD
GLLSLGQENSYRLLKLANDVTYKRLKKALNTLNQYQSGPACNLIDVLFFSSDPSAPGETK
PLKFYNESLDVSQREAVSFSLAQKELAIIHGPPGTGKTTTVVELILQAVQQGLKVLCCAP
SNIAVDNLVERLAGYKEKILRLGHPARLLETIQHHSLDAVLARGDNAQIVADIRKDIDQA
FTKTRKTQDKGERSQFRNEIKALRKELKEREETAMTEILTWANVVLATNTGASSDGPLKL
LPENHFDLVVIDECAQALEASCWIPLLKARKCILAGDHKQLPPTIISDKAAAKGLSLTLM
ERLIQKYGESIVKMLTVQYRMHQAIMQWASTEMYCGRLSAHPSVAHHLLKDLPGVASTEE
TRIPLLLIDTAGCGLFELEVEDEQSKGNQGEMCLVGLHVQALVEAGVKARDIAVIAPYNL
QVDMLREHLCHRYPELEIKSVDGFQGREKEAVVLSFVRSNRKGEVGFLAEDRRINVAVTR
ARRHVAVICDSRTVSSQAFLKRLVDYLSEHGEVRTAFEYLDDIVPENYSHENSQGHSEQG
AGPKASTTSAPKPLPGGWKSKPNPTKPSTRKPAAGPLQGVNEARVERPEMKDSSGKFRAM
MVEFLESSEMQLDFPSSLNSHDRMLVHQMAEEYGLQHVSTGEGRERYISISKRTTTVSSS
PVNTGGSEQTPLAESQNPAKEALAPVKKGGSSMSSGKVDLKTLHLERMQREKAKQEESIR
KNQELSINLQEIAGRKHKKEAKGKTLVKTGADSTAEEDIDALISAAVKADNICGFPRCKA
SVTTLGQLCLHCNRRYCLSHHIPEIHGCGEKAKTQARQRISREGILYAGSGSKDKSLDPA
KRAHLQRRLDKKLNELTSQRKSKKKDKEK
NT seq
2970 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgccggacttcgtgtcccggcagctggagctgctgcaggaggagagagaggct
gagatcgaggagaccagggcatggcgggaaagcatcttcctgaaagaactccagcgcaga
ggggtctgcttgctcaaactgcaagtagccagtcaaagaactgggctgtatggacggcta
cttgtaacgtttcagcctagaaaatacgatccagaggcagagctgccctgtaacagcttt
gggccaggtgacattgtgggtctttatgaatctgctggtcagggtgatccactttccaca
ggaattgtgacccgcataacccccaaatcggttaccgtcgcctttgaggagtctcgagat
ggcctgttgagcttgggccaagagaattcctaccgcctgttgaagctagccaatgatgtc
acctacaagaggctgaaaaaagctttaaacacactaaatcagtatcagtctggtccagca
tgcaaccttatcgatgtcctcttcttttcctctgatccaagtgctcccggcgaaacaaag
cctttaaaattctataatgaatcgctggatgtctcccagagggaggctgtttccttctcg
ctggcacagaaagaacttgccatcatccatggaccacccggcactggcaaaaccactacc
gtggtcgagctaatacttcaagctgtgcagcaaggcctgaaagtcctgtgttgtgctccc
tcaaacattgcggtggataatctggtggaaagactggctggctacaaggagaagatattg
cgtcttggtcaccctgctcgtctgctggagaccatccagcatcattccctggatgcagtc
ttggcacgtggcgataatgcccagatagtggcagatatcaggaaggatattgaccaggca
ttcacaaaaaccagaaagacccaggacaagggggagagaagccagttccgaaatgagatt
aaggcactgagaaaggagctgaaggagcgagaagaaactgctatgactgaaatccttacc
tgggctaatgttgttcttgcaacaaatacaggtgcttcctctgatggtccactgaagtta
cttcctgaaaatcactttgatctggtggtgatagatgaatgtgctcaggccctagaagca
agctgctggatccctctgctgaaggccagaaagtgtatcctggctggcgatcacaaacag
ctgcctccgacaatcatatctgacaaggctgcagcaaagggtctttctctcaccttaatg
gagcgtctgattcagaaatatggcgagagcatagtgaagatgctgactgtgcaataccga
atgcatcaggccataatgcagtgggcctccacagaaatgtactgtggccgactctcagct
cacccttccgtggcgcatcatttactgaaggacctgccgggagttgcttctacagaagag
actaggattccattgctgcttatagacacagctggctgtggcttatttgagcttgaagtg
gaagatgaacagtctaaagggaatcaaggggaaatgtgtcttgttggcctgcacgtccag
gctttggtggaagctggtgttaaagcaagagacatcgctgtcattgctccttacaacctc
caggtggacatgctaagagaacatctttgtcaccgatatccagagctggaaattaaatca
gtagatggcttccagggacgggagaaagaggccgtcgtgctctcctttgtgagatccaat
cggaagggcgaggtgggttttctcgctgaagaccggaggataaacgtggccgtgactcgg
gcacgacgccatgtggcagtcatctgtgactcgcggaccgtcagcagccaggcctttctg
aaacggctggtggattatctgagtgagcatggggaagtgcgaacggccttcgagtacctc
gacgacatcgtgccagaaaattactctcatgagaactctcaaggtcatagcgagcaaggg
gcagggcctaaagccagcacaacctctgctccgaaacctctgcctggaggctggaaatcc
aaaccaaatccaacaaaaccatccacacgcaagccagcagcaggtcccttgcagggtgtg
aacgaagccagggtggaaagaccagagatgaaagacagttcaggcaagttcagagccatg
atggtagagtttctggagagcagcgagatgcagttggatttcccttcctccttaaactct
catgacaggatgctggtgcaccaaatggccgaagaatatgggttgcagcatgtaagcact
ggggaggggagagagaggtacatcagcatcagcaagagaaccaccaccgtcagctcctct
ccagtgaatacgggtggcagtgagcaaacccctcttgccgaatctcaaaaccctgccaaa
gaggcgctagcccctgtcaagaagggaggaagcagcatgagctcagggaaagtggatctg
aaaacgctgcacctggagagaatgcaacgggaaaaagccaaacaggaagagagcatcaga
aagaatcaggagctgagcatcaatttgcaggaaatagctggaaggaaacacaaaaaggaa
gccaaaggaaagactctggttaaaaccggagcggacagtacagctgaagaagatatcgat
gccctgatttctgcagcagtgaaagctgacaatatatgtggtttccccaggtgtaaagcc
agcgttacgaccttgggacagctctgtctgcattgcaacaggcgctattgcctcagccat
cacatcccagagattcatgggtgtggggagaaggccaaaacacaagctcggcagagaatt
agcagagaaggaattctctacgctgggagtggttcaaaagacaagtcactggacccagca
aaaagagctcatctccagaggcgcctggataaaaaacttaatgaattgaccagccagaga
aagagcaaaaagaaagacaaagaaaaatga
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integrated database retrieval system
