Trachemys scripta elegans (red-eared slider): 117877667
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Entry
117877667 CDS
T07347
Symbol
SH3RF1
Name
(RefSeq) E3 ubiquitin-protein ligase SH3RF1 isoform X1
KO
K12171
E3 ubiquitin-protein ligase SH3RF [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tst01009
]
117877667 (SH3RF1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117877667 (SH3RF1)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117877667 (SH3RF1)
Protein phosphatases and associated proteins [BR:
tst01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117877667 (SH3RF1)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117877667 (SH3RF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH3_9
SH3_1
SH3_2
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-RING_2
zf-RING_5
zf-C3HC4_3
zf-RING_4
zf-C3HC4_4
zf-RING_11
Prok-RING_4
zf-Nse
Coilin_N
zf-MIZ
zf-rbx1
Motif
Other DBs
NCBI-GeneID:
117877667
NCBI-ProteinID:
XP_034626861
LinkDB
All DBs
Position
5:complement(68340716..68500292)
Genome browser
AA seq
875 aa
AA seq
DB search
MDESALLDLLECPVCLERLDASAKVLPCQHTFCKRCLLGIVSSRNELRCPECRTLVDCSV
DELPSNILLVRLLDGIKQRPWKPGTGGGTSCTNALRAQSSTVATCGSKDPQSSQGGQQQR
VQARSPPVRGIPQLPCAKALYTYEGKEPGDLKFNKGDIIILRRQVDENWYHGEVNGIHGF
FPTNFVQIIKPLPQPPPQCKALYDFEVKDKEADKDCLPFSKDDVLTVIRRVDENWAEGML
ADKIGIFPISYVEFNTAAKQLIELDKASGSAVDSGEGTSGASHNNSVQKHTDTKKNTKKR
HSFTSLTMSNKSSQSSQNRHSMEISPPVLISSSNPTAAARISELTGLSCSAPSQVHISTT
GLIVTPPPSSPVTTGPSFTFPSEVTYQAALGNMNPPLPPPPLSSTTIIASTSSGLPSSGV
VQRPASGTTDQTPHLRPQSRPSVYIAIYPYSPRKEDELELRKGEMFLVFERCQDGWFKGT
SMHTSKIGVFPGNYVAPITRTVTSASQAKVPMSTAGQTARVMTMVSPSTAGGTSQKLQGN
SMTVHSNVVPTAVVSAAHIQTSPQTKVLMHMSGQMTVNQARNAVRTVAVHSQERPTAAVM
PIQAQSSACLIPAAVIIPHHSVASQQLQPQLPNAAAYVTAVNINRSNVPLACAAASLNSS
SITSASLDGDLSGRAVSVHAGVPASPENALAAGGNTAVSKPDKDSKKEKKGLLKLLSGAS
TKRKPRVSPPSSPTLEVEQAAVEMALQGAVGPEVPSAVSHGRAGSCPVNNEISAAALAQE
TLHRKTSSLDSSIPVAPPPRQPCSSLGSVQNESRPVVCERYRVVVSYPPQSEAELELKEG
DIVFVHKKREDGWFKGTLQRNGKTGLFPGSFVENI
NT seq
2628 nt
NT seq
+upstream
nt +downstream
nt
atggatgaatcggctttgttggatctgttggagtgtcctgtttgcttagaacgtcttgat
gcttctgcaaaagtcttgccttgccaacacacattttgcaaacgttgtttgctgggcatc
gtgagttctcgaaatgagcttcgttgcccagaatgtaggactttagttgattgcagtgtt
gatgaacttcccagtaatattctactggttagactactggatggcatcaagcaaaggccc
tggaaacctggcactggtggtgggactagttgcacaaatgcattaagagcccagagcagc
actgttgctacttgtggttcaaaagacccacagagctcgcaaggtggacagcagcaaaga
gtacaagcgcggagtcctcctgttaggggtatacctcagttaccgtgtgccaaagcattg
tatacctatgagggaaaagaacctggagatcttaaattcaataagggtgacatcatcatt
ttacgtcggcaagtggatgaaaattggtaccacggagaagtcaatggcatccatggcttt
tttcctaccaacttcgttcagattattaaacctttacctcaacctccgcctcagtgcaaa
gcactttatgactttgaagtgaaagacaaggaagcagacaaagactgtttgccattttca
aaggacgatgtgctgaccgtgattcgccgagtagatgaaaattgggctgaaggaatgctg
gctgacaagatagggatatttcccatttcgtatgttgagtttaatacagcagccaagcag
cttatagagttggataaggcctcaggttctgctgttgactctggagaaggtacctctggg
gcatcccacaacaattcagtccaaaagcacactgatacaaagaagaacaccaaaaaacgg
cactcctttacctcccttaccatgtccaacaagtcctcgcagtcttctcaaaaccgtcac
tcaatggaaattagtcctcctgtcctcatcagctccagtaaccccacagcggctgcccgt
ataagtgaactgacaggcctctcctgcagtgctccttctcaggttcatatcagtaccaca
gggcttattgtgaccccgccccctagcagcccggttacaactgggccttcatttaccttc
ccatctgaggttacctaccaagctgctcttggcaatatgaatcccccccttccgccacca
cctctttcgtctaccacaatcattgcttcaacatcttcagggctgccttcttcaggagta
gtacaaaggcctgcatcaggaacaactgaccaaacaccacatttacgaccacagtctcga
ccaagtgtgtatattgccatatatccatacagtcctcgaaaagaggatgaactggaactg
cgaaagggggagatgtttttagtctttgaacgttgtcaagatggctggttcaaaggaacc
tccatgcatacaagcaagattggtgttttccctggcaattatgtggcaccaatcacaagg
acggtgacaagtgcttcgcaagcaaaagtccccatgtctactgctggccagacagcacga
gtgatgaccatggtcagcccttccactgctggtggaacatcacagaaacttcaggggaac
agcatgacagtccattccaatgtggtcccaactgctgtcgtttctgcagcacatatccaa
actagtccacaaaccaaggttcttatgcatatgtcggggcaaatgaccgtcaaccaggct
cgcaatgctgttagaacagttgcagtacacagccaagaaagacctacagcagcagtgatg
ccgatacaggctcaaagttcagcatgccttatccctgcagctgtgatcattccccaccat
tctgttgcttcccagcaactccagcctcagcttccaaatgctgctgcttacgtcactgct
gtgaatatcaaccgatcaaatgttccactggcttgtgcagcagcttctttaaactcttcc
agcatcacctctgcatctttggatggagacctgagtgggagagctgtgagtgttcacgct
ggggttcctgcttctcctgaaaatgctttagcagctggtgggaatactgcagtcagtaaa
ccagacaaggatagcaagaaagaaaaaaaaggtttgctgaagttgctttctggagcatct
accaaacgcaagccccgagtgtcacctccatcatcaccaactctggaggttgaacaagca
gctgtagagatggccctgcagggcgcagtagggcctgaggttccatcagctgtcagccat
ggcagagctggatcctgtcctgtgaacaatgaaatctctgcagcagcactagcacaggag
actctgcatcggaaaacaagttctttggattccagtattcctgtagcacctcccccccgg
cagccatgttcctccttgggctcagtccagaatgaatccaggcctgttgtttgtgaaaga
tacagggttgtggtctcctatcctcctcagagtgaagcagaacttgaacttaaggaaggg
gacattgtttttgtacacaaaaaacgtgaggatggctggttcaaaggcacactgcaacga
aatggaaaaactggccttttccctggcagctttgtagaaaacatctga
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integrated database retrieval system
