Trachemys scripta elegans (red-eared slider): 117877687
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Entry
117877687 CDS
T07347
Symbol
ALMS1
Name
(RefSeq) Alstrom syndrome protein 1 isoform X1
KO
K16741
alstrom syndrome protein 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tst03036
]
117877687 (ALMS1)
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tst03037
]
117877687 (ALMS1)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Centrosome formation proteins
Other centrosome associated proteins
117877687 (ALMS1)
Cilium and associated proteins [BR:
tst03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
117877687 (ALMS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ALMS_motif
Motif
Other DBs
NCBI-GeneID:
117877687
NCBI-ProteinID:
XP_034626909
LinkDB
All DBs
Position
5:complement(134531182..134659385)
Genome browser
AA seq
2896 aa
AA seq
DB search
MELDEEEAGTERAGQAPPIATTPPRPGWKEELLSQSSSGTQISTASGISLGEAIRQRSAV
NQGMESWYQLPAEMDVSHLAATSGRRLGLTDGGNDLTELPTLEEGLLTLTEGLGRRHTGD
MAHTPLLEIQDSRFSPCLPLLMTYSAQGQKFLDDTLFQQTELDFAPLRGTPDVSDASEQH
SKPLQISEAVQLADTEIPSDSVSGCFTLSEHPLAVSTVEPCDASCTSYLSQHPMCLSGQI
PVERKEKAEDQNYKLDINNKSFIPNRDENVTDPSRKMLLNKPETLQRPEVFATKEAISGF
VNNDPFLLDSNVPAPLLLELLEKEIGLSSHGGFSSSESSSCKSISARDPGKNETMQRVGN
VEVSDRESEVFVRESHQKLEEEKCVPELGSSMMFSDVSRREPFKNSSAPDVFSASPSEMF
MLSKGHSSDLNNSGRLWFSGVTMEPREALLDEQQKQLFSKMSGKQKEEPVSAMSKTSVKD
SASDQPVTASVESGGTCSEKNTVVEIPSGVNRSELTLSDFTIERGHKNTGISPLFNLPVD
DGSFFGQLAQPIYQSTPGIFVSRSEKQEVPGKPLPIKSNLQASLTCLNEETSRNSSTNTL
VSSAEKHHASQSGQEINSESCESLRTMYPRTGRIQSLPTLNFMEKVGAWNVNQPMEKIPD
ALVLCGLSGVSPRKKAYSAIADSLNRIFSKQSSSSGNLKSGLAAPLGGTGSMTSLHSCDK
TSAHASPLTRSQSDNSVHIISREASQIDVVQATNPDEVVQPTEEKSRVSGMPEIRKSGAQ
LGDSTTPQFTAVLVSTGSSGGGDDDDNNSIGQNSDQNVFISSERVAQLLREEEYYPSDGQ
EKHNGLENNTRQSHDPELSTNQIGMDHFNDISPDSLNLLASSQASSHVDLTAASSSSVVA
RDFFTSLDGDNVIPFWDPTLKTPDKKEINIEERIPTYLRNLGIDQSPSAILTPFVPRGPI
REVEFSPSELRTLKESTDTLKKHVQLSEGGSLSAIDITQISFNSGGSTLSMSIPMGSDAG
PDTPLSTELSPQLSRSSKDKPMSQCSIAYHHLELPAPNPTKGSSESSAVSKSVELSQMLH
TVPAGSDFEEGHTLVSKHVQKLIDKFESGDIGLSLEKLSASPLAGDADVMDVSGEPLSSH
VDASVNDLNKDQGNDSFIGSNTLKEIQKLLAEAENIALTQFDPVPFQEVSDSSSVPIEKD
GSEDSRLVKDISPALQRILSWDESLTRRSMQEDSSLMKTLNSRRHSLKWESSLAIDLPTK
EEIVEETIRPTQQGAMVACGVAKSIGRSEPEGCSSATVDKNLPALMAITKSNTSSESSIE
RVLELQNPSAMEPLGSIASDLGDFQHALAKTKTSVAGSKEGDGIRESDDSSSVDSLAARV
KSLLKNESPVLHATQILKSAEEEERKARAWVKLKLTSQPQGSVPDLNEEDRQRIDEIKTE
LLLSARKSVLAKDPRGNSSEATSSHSHSQRQNTGHFKSPVGKQLQIDSQTQDFKLNESLE
LNTRQVTPIYRSDPADSSPLDDAQFKALNTIQKHIHHQLQTLRANPFDASIELRTPLCKD
MDKCLMGLVDASSAPTEEDMILSSQKKLSTEKPSVEVAKQITSITFASRKRSQSPVASTV
LSASLSEDTLHGIMPFEIRSVSAKEQRPGKQQVESPKSCPSSSPTATHSLDNDFKFSADK
DRFQHVPIAVGKLGTSQEKDILSGQGSKTTYTDQGLTLVADRIEKAESSTHDTLGLGRHS
ARFSGVDHDMKFDQEVNVFYQPFSMSPHQQGKMNLYSQVPFADSSEGPVHSLRTPLLKDH
GTLLEKEDKLSSDMFSVSQTNVETGHANVVHCSSPDKTLMAMPESPSSPTRKALSCVHIT
LSPKCNNSELFSILDTEAETRSNDRLKTDAQQMPLSSPPKILLESASKLTTESISKDQGS
SYFPKPVSSRDLRYMPLESSQRVPFSRQVHTRVLDSCGHNLQDNFKTTVSAQTGKATSDA
ITQITTESPEKTTFSAEIYVSTEDGETSTFGPSHQRACEIANLATSSLNHISPSHRPADQ
PLLLPYKPSGSSEMYYVPHPMKGPKISPVRSETTIESSHSGSNDAVPPNFPAKVLGSMDE
NPLDTVAIKHKEGIYSKRSEPKVAWAKEKKTPQEATTESMNHLESVKTTHSVFKSAQFYL
HHPVPLQHESYFSNDEPSEECTDIGRTGPSSRDFFQNWRAAKKDQHSFSVYPQMGEEDEF
SPLTAEVDYSKVEALRFNASLGNEASGKELVQEDQKKVRDYLLSSSQRTDLVRRHKMDLP
LKQSTYSTGSLDELWTKFLERQKKHHLHNLKSSNELSLVERLDRLARVLQNPVRHSLMPT
ENGKSNIGEKTRGREQKKIRRQDKRVYESNLDSYRNVLNAEEKSDTSYDEKRQAESRQQR
AGERTINHMKRFLKQKYLDLLSDTSLETMPTKDPVVVTDSTTSESDTVTQTEMETTSQTE
VSSSISTIDTARLIRAFGHERVRLSPRLSELYCTISQQKSRSEKWDKGRSKVVGLKYPNT
TYAERHRKRKDTQIADSVISSDSVATINSSWGPSSALSNKRHTRMLNKGIQAGDLEIVNS
ATKKNTRDVGMTFPTPRSSQARPQKPASCANGDLGQLDSVFSDFRNPAGKGKQEGQPGNF
LMDKKTGSNRPQLSQGVSWFVPAEDLKSDSRKENKSNSFSGPGPSWFEPLANTMPWREPL
RERNWKEQQGSIKIQPVVVPVRDVENKPPRPFVKMTLQEALALHRPDFISRSGERVKRLK
LIMEERKLQSVLQSEREELFNPPEKKGYKNANYLLYNRDYLVKQKRRTILKSEMVQRSKR
GNAASEVFRNVGLLGAATNRVGKQGQKRRIYEQLPEVQKRREEEKRKSEYTSYRLKAQLY
KTKITNHILGRKVPWN
NT seq
8691 nt
NT seq
+upstream
nt +downstream
nt
atggagctggacgaggaggaggcggggacggagcgggcgggccaggcccctcctattgct
acaacaccaccacgtcctggatggaaggaagagttgttaagccaaagcagcagtgggacc
cagatttcaactgccagcgggatctccttgggagaagcaatccgacagagatctgccgtt
aatcagggaatggagtcatggtatcagcttccagcagaaatggatgtcagccatctagcg
gcaacatcagggaggaggctgggcctgactgatggtggaaatgacttgacagagttacct
actctggaggaaggcttgttgactctgacagaagggcttggaaggcggcatacaggcgac
atggcacacactccgctattggaaattcaggatagtcgcttctctccctgtctcccacta
ctgatgacatattcagcgcaaggtcagaagtttttggacgataccctgtttcagcaaact
gagctggattttgctcctctaagaggaacccctgatgtttctgatgcttctgagcagcat
tcaaagcctttgcagatcagtgaagctgtgcagctggcagacactgaaataccttcagac
tcggtcagtggctgcttcaccctgtccgagcacccacttgcagtcagcactgtagaacct
tgtgatgccagttgcaccagctatttgtctcagcaccccatgtgtctttctggacagata
cctgtggagaggaaggagaaggctgaagatcaaaattataaacttgatattaacaacaag
tctttcatccctaatagagatgaaaatgtaaccgacccaagtagaaaaatgttgctaaac
aagccagaaacactacagcgtccagaagtatttgctacaaaggaagctattagtggtttt
gtaaataatgatcccttccttttagacagcaatgtgccagctcctctcctccttgagctt
ctggaaaaagaaataggattatcgagccatggtgggttctcatcttcagaaagttcttca
tgcaagagcatatcagctagggacccagggaaaaatgaaacaatgcagcgagtaggaaat
gttgaggtttctgacagggagtcagaagtgtttgtaagagaatcacatcagaagctggaa
gaagaaaagtgtgttcctgagcttggctcctccatgatgttttctgatgtttcaaggaga
gaaccttttaaaaattccagtgccccagatgtgttttctgcaagcccttcagaaatgttc
atgttgtccaagggacatagttcagatttgaataactctggcagattgtggttctctggt
gttaccatggagccccgggaggcgcttctagatgagcagcaaaaacaactgttttctaaa
atgtctgggaaacagaaagaggagcctgtctctgctatgtccaaaactagtgtcaaggac
agcgcatctgaccagccagtcacagctagtgtagaatctggtggaacatgcagtgagaag
aatactgttgtggaaatcccatctggagttaacagaagtgaattaactctttcagacttc
accatagaaaggggacataaaaatacaggcatttcacctttatttaatcttcctgtagat
gatggttcattctttggacaattagctcaaccaatctatcagtccaccccggggatattt
gtaagcagaagtgaaaagcaggaagtacctggtaagccccttcctatcaaatcaaatctt
caggcttctcttacttgtttaaatgaagaaacttctaggaactcctctacaaatacactt
gtttcttctgctgagaagcatcatgcatcccagagtggacaagaaataaacagtgaaagt
tgtgagtctttaagaacaatgtatcctcgtactggaagaatccagtctctccctaccctt
aatttcatggaaaaggtcggagcttggaatgtgaaccagccaatggagaagatacctgat
gctttggttttatgtggcttgagtggagtttctccaaggaagaaagcctacagtgcaatt
gctgattccttaaaccgtattttctcaaagcagagcagcagcagtggtaacctcaagagc
ggtttagctgcacccttgggagggacaggctcaatgaccagtttgcattcctgtgataaa
acgtcagcacatgcttcaccacttaccaggtctcagtctgacaactcagtacatataatc
agcagagaggcttcacagatagatgttgttcaggcaacaaacccagatgaagttgttcag
cccacagaagaaaagagcagagtttctggaatgcctgaaattagaaaaagtggtgctcag
ttaggagactccacaaccccacagtttacagctgttcttgtctctactgggtccagtggt
ggtggtgatgatgacgacaataatagcataggacaaaattcagatcaaaatgtcttcatt
tccagtgaaagggttgctcaacttctcagggaggaggaatactatccaagtgatgggcaa
gagaaacacaatggtcttgaaaataataccagacagtcacatgatccagaactctctact
aaccagatcggtatggatcatttcaatgacatttctccagatagcttaaacctcctggct
agttcacaggcaagtagccatgttgacttgaccgctgcaagctcctcttcagtagttgcc
agggattttttcaccagtttagatggggataacgtcattcctttctgggatcctactttg
aaaactccagataaaaaagagataaatattgaagaaagaataccgacgtatcttcgtaat
cttggaattgatcaatcaccttcagctatactgactccatttgtacccagaggaccaatc
agagaggttgaattttccccatcagagctcagaacattgaaggaatcaactgacacctta
aaaaagcatgtccagctatctgaaggaggttctctgtctgcaattgacattacgcagata
agctttaactctggtggttccacgctcagcatgtctataccaatgggttcagatgctggc
cctgatactccattatccactgagctctcacctcagctctcaagatcttccaaagacaaa
ccaatgagtcaatgcagtattgcctaccatcacttggagctacctgccccaaaccccacc
aaaggcagctcagaatcttcagctgtctcaaaatccgttgaactgagccagatgctgcat
acagttccagctggctctgactttgaagagggtcacacacttgtttcaaaacatgttcaa
aagctgatagataaatttgagtctggggatattggcctcagcctagagaagttgtccgct
agtcctttggctggagatgcagatgtaatggatgtcagtggagaaccactgtcttcacat
gtagatgcctctgttaatgatttaaacaaggatcaaggaaatgattccttcattggatcc
aacacattgaaagagatccagaagcttttagcagaggcagaaaatatagctctgactcag
tttgaccctgtccctttccaagaagtcagcgactcttcgtcagtgccaattgaaaaggat
ggttctgaagattccagattagtaaaggacatcagtccagcacttcagagaatattatca
tgggatgagtccttgaccagaagaagcatgcaagaagatagttcactaatgaagactctg
aattcccgcaggcacagtttaaaatgggaaagctctcttgctattgatttacccactaag
gaagaaattgtggaagagacgattagaccaacacagcagggagctatggtagcgtgtggg
gtagcaaaatccatagggaggtcagaaccagagggttgcagtagtgcaacagtagataaa
aacctgcctgctctcatggctattacaaagagtaatacaagtagtgaatcaagcattgaa
agggttttagaattgcagaatccttctgccatggagcccttaggcagcatcgccagtgac
cttggggattttcagcatgccttggctaaaactaaaactagtgtggctggcagcaaagag
ggagatggcattcgagagagcgatgacagtagcagtgtagattcactggctgcccgtgtc
aaaagtcttctgaaaaatgaatcccctgtgctacatgcaacacaaatactaaaaagtgca
gaggaagaggagagaaaagcccgtgcatgggtgaagctgaagctgactagccagcctcag
ggttctgtgccagatctgaatgaagaggatcggcagagaatagatgagatcaagacggag
ctgcttctgagcgccaggaaatctgtgttagccaaggatccacggggaaacagttcagag
gctacatcgagtcacagccatagtcagaggcagaacacaggacacttcaaatctccagtt
ggcaaacagttgcaaattgacagccagacacaagatttcaaacttaatgagtctctagag
ttaaacacaagacaggtcacaccaatatatagaagtgaccctgctgattcttcaccacta
gatgatgcacagtttaaagctttgaataccatccaaaaacatatccaccatcaactgcag
acgctcagagctaatccctttgatgctagcattgagctccgcacacccttgtgtaaagat
atggacaaatgtttgatgggattggtggatgcttccagtgcaccaacagaagaggacatg
attctttcatctcagaagaagctgtctacagaaaaaccttctgtagaagttgccaagcag
attacttccatcacttttgcatcccgtaaacgttcccagtctcctgtagcttccactgtc
cttagtgccagtctcagtgaagatactcttcatggtataatgccttttgaaattagatct
gttagtgctaaagagcaaagacctggcaagcaacaagtggaaagtcctaaatcatgtcct
tcatcaagcccaacagccactcactcacttgataatgattttaagtttagtgcagataaa
gacaggtttcagcatgtgcccattgctgttggcaaacttggaacttctcaagaaaaagac
attttatcaggtcaaggttctaaaaccacatacactgaccaaggacttaccctagttgca
gatagaattgagaaagctgaatcttccactcacgatactcttgggttgggcagacatagt
gccagattttctggggttgatcatgatatgaaatttgatcaagaagtaaatgtgttttat
caacctttttccatgagtcctcatcagcagggaaagatgaatctgtacagccaggttcca
tttgcagatagctcagaaggtccagttcatagcctacgaacccctttgcttaaagaccat
ggtactttgttggaaaaggaggataaactttcttctgatatgttctctgtcagccagaca
aatgttgagaccggacatgccaatgtggtacattgttcctccccagataaaactttaatg
gccatgcctgaatctccttcatctccaaccaggaaagcactgtcttgtgtccacataact
ctctccccaaaatgcaataattcagaactgttcagtatattggacactgaagctgaaaca
agatctaatgacagacttaagactgatgctcaacaaatgcctttaagctctccccccaaa
attttgttagaatctgcctctaaattaactactgaatctatctcgaaggatcaaggttct
tcatacttcccaaaaccagtatcttcacgagatttaagatatatgcctctggaaagtagc
cagagggtaccattctcaaggcaagttcacaccagagttttggattcatgtggacataat
cttcaggataatttcaagaccacagtttctgcacaaactggaaaggcaacatctgatgcc
ataactcagataacaacagaaagtcctgaaaagacaacattttcagcagagatatatgtt
agtactgaagatggtgaaaccagtacctttgggccctctcaccagagggcatgtgaaatt
gctaacctagctacttcatctctgaaccacatttcgccttcccacaggccagctgatcag
cctctgctgctgccatataagccttctggaagttctgagatgtactatgttccccatccg
atgaaaggacccaaaatatctcctgtcaggtcagagaccactattgagagctctcactca
ggatcaaatgatgctgttcctccaaattttccagcaaaggtacttggttccatggatgag
aatcctctagacactgtagctattaaacataaagagggtatctacagtaagaggtctgag
cctaaggtagcctgggcaaaagaaaaaaagacaccacaagaagctactacagagtccatg
aatcatttggaatctgtaaaaacaactcattcagttttcaagtcagcccagttttacctt
caccatccagtgcccctgcaacatgagagttacttctctaatgatgagccttcagaggaa
tgcacggatattggacgcactggaccttcttcaagagatttcttccaaaactggagagct
gcaaagaaagatcaacactccttctctgtttaccctcagatgggtgaggaggatgaattc
tccccactaactgcagaagtggattatagcaaggttgaggccttgagattcaatgcatct
ttggggaatgaagcttcagggaaagagcttgtacaagaggaccaaaagaaggtcagagat
tatctgctatcaagcagccaaaggactgacttagtcaggagacacaagatggatctgcca
ctaaaacagagtacctactccactggcagtttggatgagctttggactaagtttttagag
cgtcagaagaagcaccacctccataatcttaagagcagcaatgagctgtccctagtggaa
cgccttgatcgactggccagagtcctccagaatcccgttaggcattcactaatgcctaca
gagaatggcaagagcaatattggagagaaaactaggggaagagagcagaagaaaataaga
cgtcaggacaagagggtatatgaaagtaacctagactcttatagaaacgtattgaatgct
gaagaaaaatcagataccagttatgatgaaaaaagacaagctgagtctagacaacaaagg
gcaggagagagaactatcaatcacatgaagagattcttgaaacagaaatatttagatctc
ctgagtgacacctctttagagaccatgcctactaaagaccccgttgtggtgacagattct
accacctctgaatcagacacggtgacccaaacagagatggaaacaacttctcagactgag
gtgagcagttccatttccaccattgacactgccaggctgatcagggcttttgggcatgaa
agagtgcgcttgtcaccaagactgtctgaactgtattgcaccatcagtcagcagaaaagt
cgctctgaaaagtgggacaagggaagaagtaaagtagtgggcttgaaatatcctaacacg
acttatgctgagcgacatagaaaaagaaaagatacccagatagcagactctgttatttca
tcagattctgttgctacaatcaacagttcctggggaccaagttctgccctcagtaacaag
cgacacacacggatgttaaacaagggcatccaagcaggagatttggagattgtgaacagt
gcaactaagaaaaacactcgggatgttggtatgactttccccaccccaagatctagccaa
gcgaggccacagaaacccgcaagttgtgccaatggtgatcttgggcagttggatagtgtg
ttttcagattttcgaaacccagcaggcaaggggaaacaggagggacagccaggcaatttt
ctcatggacaaaaagacaggaagcaacaggccgcagctatcacaaggagtttcctggttt
gttcctgctgaggatttaaagtccgactctaggaaggagaacaaatctaactccttttct
ggtccaggtccatcctggtttgagccacttgccaacacaatgccgtggcgagagccactc
cgagaaaggaactggaaagagcagcaaggcagcatcaagattcaaccagtagtagtccca
gtaagagatgttgagaacaagcccccaagaccatttgtgaaaatgacgctgcaggaggct
cttgcattgcaccgccctgatttcatctcccgctctggggagcgtgtgaagcgcctgaag
ctcatcatggaagaaaggaagctacagagtgtgttgcagagcgagcgagaggagctgttc
aatccccctgagaagaagggttataagaatgctaattacctgctctataacagagactac
ctggttaaacagaagagaaggacaattctaaagagtgaaatggttcagagatcaaaacga
ggtaatgctgctagtgaagtttttagaaatgttgggcttctgggagcagccacaaacaga
gtaggaaaacagggacaaaagagaagaatctatgaacagctgcctgaggtgcagaagagg
cgagaggaagagaaaagaaaatctgaatatacttcctatcggctgaaagcacagctttac
aaaacgaaaatcaccaatcacatcttagggagaaaagtaccttggaactga
DBGET
integrated database retrieval system
