Trachemys scripta elegans (red-eared slider): 117877775
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Entry
117877775 CDS
T07347
Symbol
RFC1
Name
(RefSeq) replication factor C subunit 1
KO
K10754
replication factor C subunit 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03030
DNA replication
tst03410
Base excision repair
tst03420
Nucleotide excision repair
tst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117877775 (RFC1)
03410 Base excision repair
117877775 (RFC1)
03420 Nucleotide excision repair
117877775 (RFC1)
03430 Mismatch repair
117877775 (RFC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tst03032
]
117877775 (RFC1)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117877775 (RFC1)
DNA replication proteins [BR:
tst03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
117877775 (RFC1)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
117877775 (RFC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
PTCB-BRCT
AAA_22
BRCT_2
Rad17
AAA_5
AAA_14
RuvB_N
AAA_18
AAA_17
AAA_30
RNA_helicase
nSTAND3
AAA_33
AAA_7
AAA_16
NTPase_1
AAA_19
Motif
Other DBs
NCBI-GeneID:
117877775
NCBI-ProteinID:
XP_034627148
LinkDB
All DBs
Position
5:96731966..96810687
Genome browser
AA seq
1141 aa
AA seq
DB search
MDIRKFFGVVSTGKKHECERVKKTEKTKDGEESSDGKKKTKDIKVKNSSNEDDSKRKQTN
KKKRIIYDSDSEEEVQSVKKTKKPPERKPSSSKPDKVLKQDPVVYVSETDDEGDFINQKT
SQKPKENGTSASSCLGTAGARKEDAKPQAKSKPLSPIKLTPTSVLDYFGTSSVQRSDKKL
VASKRKEPSQSRDSLLEDETIAKQLQLEEDSELERQLHEDEEFARTLALLDETPKKKKAR
KDPEEKLTILTTKTSSNTAEKHKQSQKDDTRNCSAKEQTKSESTRPSCQHPETSVGKAVE
SENKTLPLKPSSKLVALKQKEDSSKKERETLSAVTKEKIISGKQETRTPKKQKVSPQKPE
SISPEDSEKKRVNYQAYRSFLNREGPKALGSKEIPQGGENCLEGLTFVITGVLESIERDE
AKSLIERYGGKVTGNVSKKTNYLIMGRDCGQSKCEKASTLGTKIIHEDGLFDLIRTMPGK
KSKYELAAEAEAKKAKSKWDKTPQKTEPEKRKISPAKKETDPKKSNSTLEKGGTFRSIKK
ETTEAQKGLKFKQQAMEKKHAAKPEESCVPEISKDRAEGLLWVDKYKPTSLKTVIGQQGD
QSCANKLLRWLRNWHKNTSEDKHAKPSKSGGKEDGTNFKAALLSGPPGVGKTTTAALVCE
ELGYSYVELNASDTRSKNSLKDVVAESLNNTSMKDFCSGTSHSVSMKHVLIMDEVDGMAG
NEDRGGIQELIGLIKTTKIPIICMCNDRNHPKIRSLVHYCFDLRFQRPRLEQIKGAMMSI
AFKEGLKIPAPAMNEIILAANQDIRQVLHNLSMWCTKNKSLTYDEAKADASKAKKDIKLG
PFDVVRKVFTAGEETAHMSLIDKSDLFFYDYSLAPLFVQENYVHVKPVAARGNMKKHLML
LSRAADSICDGDLVDKQIRSKQNWNLLPTQAIYSSVLPGELMRGYMSQFPNFPGWLGKFS
STGKHDRIVQELAMHMSLRTHTSKRAVNMEYLSYLRDALVKPLTSLGTEGVQDAVTFMDS
YCLMREDVENIMEISSWGGKPSPFSKLDPKVKAAFTRAYNKEAHLTPYALHAVKTSKRQP
GPGLASEVNEELNADELQSDEDEQDPIESDAMIKQKKAKSSKLSKSANREETKKGKGKGK
K
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atggatatcagaaaattctttggggtcgtatctactggcaagaaacatgaatgtgagaga
gtgaaaaagaccgagaaaaccaaagatggggaagagtcttcagatgggaagaagaaaaca
aaggatatcaaggtgaagaattcatctaatgaagatgattccaaacgaaagcagacaaac
aagaaaaaaaggataatctatgattcagattcagaagaggaggtgcagtcagtaaagaaa
actaagaagccaccagagagaaaaccatcctcttcaaaacctgataaagttcttaagcag
gatcctgttgtttatgtttcagagacagatgatgaaggtgacttcattaatcagaagact
tcccagaaacccaaggagaatggaacatcagcaagcagctgtctaggaacagcaggagca
agaaaggaggatgcaaaaccacaggctaaaagtaaacctttatcgccaataaaattgacg
ccaacctctgtactcgattactttggaactagtagtgtgcagcgatcagacaagaaattg
gtagcaagcaaaagaaaagaaccttcacaaagcagagattcattgctagaagatgagacc
attgctaagcaactgcagttagaggaagattcagagctagagagacagctgcatgaggat
gaagaatttgccagaactctggccctgttggatgaaacaccaaagaaaaaaaaggctcga
aaagatccagaagagaagctaaccattttgactaccaagaccagttcaaacacagcagaa
aaacataaacagtctcaaaaagatgacacaagaaattgtagtgcgaaggaacaaactaaa
tctgaaagtacaagaccatcttgtcagcatccagaaacgtctgttggtaaagccgtggag
tcagagaataagactttgcctttgaaacctagctctaagctggtggctctgaaacaaaaa
gaagacagcagtaaaaaggagagagagacactcagtgcagtgacaaaagaaaaaatcatt
tcaggaaagcaagagacaagaacaccaaagaaacagaaagtttctccccaaaagcctgag
tctatcagtcctgaggactctgaaaagaaacgagtcaactaccaggcatatcgaagcttc
cttaatcgagagggtccaaaagcactaggttccaaagagataccacaaggaggtgaaaac
tgcttggagggtctgacgttcgtaattacaggagtcctggagtctattgaacgagatgag
gccaagtctttaattgagcgttatggaggaaaagtgactggtaatgtgagcaagaagaca
aactatctcattatgggacgtgactgtggccagtctaaatgtgagaaggcatcaacatta
gggacaaaaattattcatgaggatggcctatttgatctgattcgaactatgccaggcaaa
aagtccaaatatgaattagcagctgaagcagaggcaaagaaagcaaagtcaaaatgggac
aagaccccacagaaaacagagcctgaaaaaagaaaaattagcccagctaagaaagaaact
gaccctaaaaaaagcaactccactcttgaaaaaggaggcaccttcagatctataaaaaaa
gaaactactgaagctcagaaaggtctgaagttcaagcagcaagctatggagaagaagcat
gccgcaaaacctgaagagagttgtgttcctgagataagcaaagacagagcagaggggttg
ctgtgggttgataaatataagcccacatctcttaaaacagtaattggacagcaaggggat
caaagctgtgccaataagttattacgatggctccgaaactggcacaagaatacttctgag
gacaaacatgcaaaacctagtaaatcgggaggcaaagaagatggtactaattttaaagca
gctttgctgtcaggtccaccaggagttggtaaaacgactacagctgctttagtttgtgag
gaactggggtacagctatgtggaactgaatgctagtgacactcgcagtaagaacagtttg
aaggatgtggttgccgaatctctgaataacaccagcatgaaagacttctgttctggaaca
tcccattcagttagcatgaaacatgtattgatcatggatgaagtggatggaatggcaggg
aatgaagacagaggaggaatacaggagttaattggtctgatcaaaaccacaaagattcct
ataatctgtatgtgtaatgatcggaaccatcccaagattcgttccctggtacattactgt
tttgatcttcgctttcagagacctcggctagaacagattaagggtgccatgatgtctatt
gcatttaaagaagggttaaagatacccgctccagctatgaatgagataattctggcagca
aatcaggacattaggcaggttttacataatcttagtatgtggtgtacaaaaaataaatca
ctgacctatgatgaggcaaaagctgatgccagcaaagccaaaaaggacatcaaattgggc
ccctttgatgtcgtcaggaaggtttttactgctggagaggaaactgctcacatgtctctt
atagacaaatctgacctattcttctatgattactctctagcacctctttttgtccaagaa
aattatgtacatgtgaaacctgttgctgctcgaggtaacatgaaaaaacacttgatgcta
ctgagcagagcagcagacagtatatgtgatggtgatctagttgacaagcagattcgcagt
aagcaaaactggaaccttctgcctacgcaggccatttattcgagtgttctccctggggag
ctaatgagaggttacatgtcacagtttcctaactttccaggctggctggggaaattttca
tccacaggcaaacatgatcggattgttcaagaactggcaatgcacatgagtctcagaacc
cacaccagcaagagagccgtaaacatggagtatttgtcatacttgcgggatgcacttgtt
aaacccttgacaagcttaggaacagaaggtgtacaggatgctgtaacattcatggactcc
tactgcttgatgagagaagatgttgaaaatattatggaaatatccagctggggaggcaaa
cctagtcccttttctaaactggaccccaaggtcaaagcagcttttacacgagcctataac
aaagaggcacatttgacaccctatgccctgcatgcagtaaagacttctaaacggcagcca
gggcccgggttggcttcagaagtgaatgaagaattgaatgctgatgaattgcagtctgat
gaggatgagcaagatcctattgaaagtgatgcaatgatcaagcaaaaaaaggcaaagtct
tccaaactgtcaaaatcagcaaacagagaagaaacaaaaaaaggaaaagggaaaggaaag
aaatga
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integrated database retrieval system
