Trachemys scripta elegans (red-eared slider): 117877823
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Entry
117877823 CDS
T07347
Symbol
PCDH7
Name
(RefSeq) protocadherin-7 isoform X1
KO
K16498
protocadherin delta 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117877823 (PCDH7)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tst01009
]
117877823 (PCDH7)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117877823 (PCDH7)
Protein phosphatases and associated proteins [BR:
tst01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117877823 (PCDH7)
Cell adhesion molecules [BR:
tst04515
]
Cadherins
Protocadherins
117877823 (PCDH7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_2
Cadherin_CELSR2_9th
Mid2
TMEM154
LYRIC
KIAA1549
DUF3239
EphA2_TM
DUF6479
Motif
Other DBs
NCBI-GeneID:
117877823
NCBI-ProteinID:
XP_034627244
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All DBs
Position
5:complement(101858275..102255023)
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AA seq
1273 aa
AA seq
DB search
MRKMRTLFGFVHCCCCCFLLLLPPPLWVSLAAAKQLLRYRLAEEGPADIRIGNVASDLGI
VTGSGEVTFSLESGSDYLKIDNMTGELSTTERRIDREKLPQCQMIFDENECFLDFEVSVI
GPSQSWVDLFEGRVIILDINDNTPTFPSPVLTLTVEENRPVGTLYLLPTATDRDFGRNGI
ERYELLQEPGGDGGRRGGGGSASAAESALYPGGSKRRQEPDGAARSSVFELQVADTPDGE
KQPQLIVKGALDREQRDSYELSLRVRDGGDPARSSQAILRVLITDVNDNSPRFEKSVYEA
DLAENSSPGTPILQLRAADLDVGVNGQIEYVFGAATESVRRLLRLDETSGWLSVLHRIDR
EEVNQLRFTVMARDRGQPPKTDKATVVLNIRDENDNVPTIDIRKIGRIPLRDGVASVAED
VLVDTPIALVQVSDRDQGENGVVTCTVVGDVPFQLKPASEGEGEPQNKRKYFLHTSAPLD
YEAVRDYNVVIVAVDSGSPSLSSNNSLLVRVADTNDNPPVFGQAVLEVSFPENNSPGERV
ATVAATDADSGKNAEIFYSLEPSPLSSEAPGGIFSIDPDSGDVLVQAVLDREQRDTYEFQ
VTARDKGVPALQGSTTVVVRVADRNDNEPRFMQDVFTFYVKENLQPNSPVGMVTVMDADR
GRNAELSLSIQPGQQDQAAGIFSIENDTGTIYSTVSFDREQQTSYTFKVKAVDGGEPPRS
ATATVSLFVMDENDNPPAVTFPSNSSYTVLPPSSNLRTVVATVLATDADTGLNADLNFSI
VGGNPFKLFEIDPASGVVSLVGKLAPKHYGLHRLVVQVNDSGQPPQSTTALLHVFVNESL
SNATVVESQVARSLHTPLAQDIAGDPSYELSKQRLSIVIGVVAGIMTVILLILVVVMARY
CRSKSKHGYEAGKKDHEDFFTPQQHDKAKKPKKDKKGKKGKQPLYSSIVTVEASKPNGQR
YDSVNEKLSDSPSMGRYRSVNGGPGSPDLARHYKSSSPLPTVQLHPQSPTAGKKHQAVQE
LPPANTFVGAGDNISIGSDHCSEYSCQASSKYSKQVDTVQTTPPPGHIEESCKMNPFRRV
TFSVVSQPQDPHQGSLQSCYDSGLEESETPSSKSSSGPRLGALPLPEDNYERTTPDGSVG
EAEHMENDSRPLPDVALTGKCTRECDEYGHSDSCWMPVRTSPERKQKSQPKLSTFMPVDE
RGSQEKLANGEASLMGDRNRNLLNKKLTSSYETFNAASFSKNEEANPEDIPLTQTGEYKP
SPVNTLTRREVYL
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagatgcggactctctttggctttgtgcattgctgctgctgctgcttcttgctc
ctgctgcctcctccactctgggtcagcctggccgcggctaagcagttgctgaggtaccgg
ctggccgaggaaggacctgccgacatccgcataggcaacgtggcttcagacctgggcatc
gtaacgggctccggagaggtgacattcagcctggagtcgggctccgactacctgaagatc
gataacatgaccggggagctgagcaccactgagcggcgcatagaccgcgagaagctgccg
cagtgccagatgatcttcgatgagaacgagtgcttcctggacttcgaggtctcggtaatc
ggcccttcgcagagctgggtggacctcttcgagggccgggtcatcatcctggacatcaac
gacaacacccccacttttccctcgcctgtcctcacccttacagtggaggagaaccggccc
gtagggaccctctatctactccccactgccaccgacagagacttcggtcgcaacggcatc
gagcgctacgagctgctgcaggagcccggtggggacgggggcagacgcggaggagggggg
tcggcttctgcagctgagagcgccctctaccccggcggcagtaagaggaggcaggagccg
gacggggcagcccgcagcagcgtgttcgagctacaggtggccgacacccctgatggggag
aagcagccgcagctgattgtcaaaggggcgctggaccgagagcagagggactcctatgaa
ctgagcctgagggtgcgggacggcggcgacccggcccgctcctcccaggccatcctgagg
gtgctgatcaccgacgtgaacgacaacagcccccgctttgagaagagcgtatacgaggcg
gacctggcggagaacagcagccccgggacccccatcctgcagctgcgggccgccgacctg
gacgtgggggtgaatgggcagatcgagtacgtattcggggcggccaccgagtcggtgcgg
cgcctgctgcggctggacgagacctcgggctggctcagcgtcttgcaccgcatcgacagg
gaggaggtgaaccagctccgcttcaccgtcatggcccgggaccggggccagccgcccaag
accgacaaggccacggtggtgctgaacatccgcgacgagaacgacaacgtgcccaccatc
gacatccgcaagatcggccgcatcccgctgcgggacggggtggccagcgtggccgaggac
gtgctggtggacacccccatcgccctggtgcaggtttccgaccgcgaccaaggcgagaac
ggcgtggtgacctgcacggtggtaggggacgtgcccttccagctcaagccggccagcgag
ggcgagggggagcctcagaacaagcgcaagtacttcctgcacacctcggccccgctcgac
tacgaagccgtccgtgactacaacgtggtgatcgtggccgtggactcgggcagccccagc
ctgtccagcaacaactcgctgctggtgcgggtggcggacaccaacgacaacccgccggtg
ttcggccaggccgtgctggaggtctcctttccggagaacaactcgcctggggagagggtg
gccacggtggcggccacggacgcggacagcggcaagaacgccgaaatcttctactcgctg
gagccctctcccctctcctcggaggcgcccggcggcatcttcagcatcgacccggactcc
ggggacgtcctggtgcaggcggtgctggaccgggagcagcgcgacacgtacgagttccag
gtgacggcccgggacaagggggtgccggccctgcagggctccaccacagtagtggtgcgg
gtggccgaccgcaacgacaacgagccgcgcttcatgcaggacgtgttcaccttctacgtg
aaggagaacctgcagcccaacagccccgtgggcatggtgaccgtgatggacgccgaccgg
ggccgcaacgccgagctcagcctctccatccagcccggacagcaggaccaggccgccggc
atcttctccatcgagaacgacaccggcaccatctactctactgtctccttcgaccgagag
cagcagaccagctacaccttcaaggtcaaggcggtggacggaggggagccgccccgttcg
gccaccgccaccgtctccctctttgtgatggacgagaacgacaacccgcccgccgtcact
ttccccagcaacagctcctacaccgtgctgcccccctccagcaacctgcgcactgtggtg
gccactgtgctggccaccgacgcggacacgggcctcaacgccgacctcaacttcagcatc
gtcggtggcaaccccttcaagctcttcgagatcgaccccgccagcggcgtggtgtcgctg
gtgggcaagctggccccaaagcactatggcctgcaccgcctggtggtgcaggtgaacgac
agcggccagccgccccagtccaccaccgccttgctccacgtcttcgtcaacgagagcctc
tccaacgccaccgtggtggagagccaggtggcccgcagcctgcacacgcccctggcccag
gacatcgccggcgaccccagctacgagctgagcaagcagcggctcagcatcgtcatcggg
gtggtggccggcatcatgacggtgatcctgctcatcctggtggtggtcatggcccggtac
tgccgctccaagagtaagcacggctacgaggcgggcaagaaagaccacgaggacttcttc
accccgcagcagcacgacaaggccaagaagcccaagaaggacaagaaaggcaagaagggc
aagcagcccctctatagcagcatcgtcaccgtggaggcctccaagcccaacgggcagcgc
tatgacagcgtcaacgagaagctctccgacagccccagcatgggccgataccgctcggtc
aacggcggcccaggcagcccggacctggccaggcattacaaatccagctcgccgctgccc
actgtccagcttcacccgcagtcccccaccgccgggaaaaagcaccaggccgtgcaggaa
ctgcccccggccaatacttttgtgggggcaggagacaacatctccattggatcggaccac
tgctccgagtacagctgtcaggccagcagcaagtacagcaagcaggtggatacagtgcag
actacgccgccccctggccacattgaggaatcgtgtaaaatgaatccatttcgtagagtg
acgttttctgttgtgagtcagcctcaggacccacatcaagggtcattgcagagttgctat
gacagcggtctggaggagtcagaaacaccaagcagtaagagttcatcagggccaagactg
ggtgcccttccactcccagaggacaactacgaaaggactacgccggatggcagtgttggt
gaggcagagcatatggaaaatgactcgaggcctctaccagatgtagccctgacggggaaa
tgtactcgagagtgtgatgaatatggtcactcggactcctgctggatgccagttcgcact
tcgcctgaaaggaagcagaagagccagccaaaactctccaccttcatgcctgttgatgaa
cggggcagtcaggaaaagctggccaatggagaagcctccctcatgggtgatcgcaacaga
aacctcctgaacaaaaagttgacctcatcctatgagaccttcaatgcagctagcttcagc
aaaaatgaggaagccaatccagaggatatcccccttacacagacaggggaatacaagcca
tctcctgtcaatactctaactagaagagaagtttacctgtag
DBGET
integrated database retrieval system
