Trachemys scripta elegans (red-eared slider): 117877825
Help
Entry
117877825 CDS
T07347
Symbol
POLR1A
Name
(RefSeq) DNA-directed RNA polymerase I subunit RPA1
KO
K02999
DNA-directed RNA polymerase I subunit RPA1 [EC:
2.7.7.6
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
117877825 (POLR1A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117877825 (POLR1A)
Enzymes [BR:
tst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
117877825 (POLR1A)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase I system
RNA polymerase I
Core subunits
117877825 (POLR1A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_1
RNA_pol_Rpb1_4
Nop14
Utp13
Motif
Other DBs
NCBI-GeneID:
117877825
NCBI-ProteinID:
XP_034627251
LinkDB
All DBs
Position
5:complement(125902012..125955149)
Genome browser
AA seq
1708 aa
AA seq
DB search
MGPPREVPWRRLTGISFGMYTAEEIRKLSVKAITNPRYLDNVGNPAVNGLYDLSLGPPDA
KEVCTTCMQDFNNCPGHLGHIDLPLTVYNPLFFDKLYLLIRGSCLNCHLLTCTRAVVHLL
LSQLKVLEKGLLHAVCDLEAILNRFLDENTDASGLDIEEELNRHANEILQNNQLGDECSH
VKNVCECRSKLIAQFWKLHMTSKRCPNCKSRRSLVRKEHNSKLTVTYPTVVQQKSGKEAI
LEEPAIIDETQLGKRGYLTPITAKDHIVALWKNEGFFLNHLFSGLEVGENSGFSPDMFFL
DLLVVPPSRYRPVNRLGDQMFTNGQTVNLQAVMKDVQLIRKLLAFMAQEQSQPIKLVENE
IQKVTDEPLESLDRSVLAMISGQSTADKLYNIWIRLQSHVNIVFDSDMDKLMTEKYPGIR
QILEKKEGLFRKHMMGKRVDYAARSVICPDMYIATNEIGIPMVFATKLTYPQPVTPWNVK
ELRQAVLNGPNVHPGASMVVNEDGSRTVLSATNQTQREAIAKQLLTPSTGAPKPGMKIVC
RHLKNGDVLLLNRQPTLHRPSIQAHRARILPGEKVLRLHYANCKAYNADFDGDEMNAHFP
QSELGRAEAYVLACTDEQYLVPKDGKPLAGLIQDHMISGASMTIRGCFFTREQYMELIYR
GLTDKKGRVKILPPAIMKPQRLWTGKQIVSTLLINVIPENQIPLNLSGKAKIGGRAWVKG
PQNRIPGSNLDSMCESQVIIRGGELLCGVLDKAHYGSSAYGLVHCCHEVYGGETSGKVLT
CLARLFTAYLQLYRGFTMGVEDILVKPQADHRRHRIIEVSTHCGTRAIRAAFNLPETASC
EEIQGKWQDAHLHKDQRDFNMVDLKFKEEVNNYSNEVNKACMPLGLHRSFPENNLQLMVQ
SGAKGSTVNTMQISCLLGQIELEGRRPPLMASGKSLPCFQPYDFSPRSGGFVTGRFLTGI
KPAEFFFHCMAGREGLVDTAVKTSRSGYLQRCIIKHLEGLVVQYDLSVRDSDGSVVQFLY
GEDGLDIPRTQFLQPKQFPFIAENYEVIQKSKHIDEVLSKIDPQQANQHFRAIKKWQTKH
QVSLPREGAFVLYSQKKMARVREQTLGGEIINGRDPATLQLLKMWYELDEKSRRKYLKRT
SKCPDPSLAVWRPDIYFASVSEAFESEVENYISEWNAQNNSNYVKSELSCDRLNSLLHLK
WQRSLCDPGEAVGLLAAQSIGEPSTQMTLNTFHFAGRGEMNVTLGIPRLREILMVASANI
KTPMMSVPVLNTKKAHKKVKRLKKQFTRVCLAEVLQKVEVEESLCIEGKLSKHRLYQIKF
YFLPYEYYREEKCLKPRDILYFMETRFFKILLETIKRKSAKLASFNVVNTRKATRRDLDG
SGGESQENQTQDDHEADEEEAGRLIDGEADEGDADATDTKRREKQEEEVDYESEEENSEE
NGDENPEEEEGTLHDDKRAEDAEEGDQNEYNYQTKKEKGPKPEHSTQLRVSAVMSSHPSI
VNYTYDMENELWCEVSLKLPLMKAYFDLSSILTSLMQNTVVHETKGITRCFLNESTNKKG
EKEFVLNTEGINLPELFRYADLLDLSRLYSNDIHAMAKTYGIEAALRVIEKEIKDVFAVY
GIVVDPRHLSLVADYMCFEGVYKPLNRFGMQSNSSPLQQMTFETSYKFLKEATMMGAHDE
LRSPSACLVVGKVVKGGTGLFDLKQPLT
NT seq
5127 nt
NT seq
+upstream
nt +downstream
nt
atggggccgcccagagaggtgccgtggcggcggctgaccggtatttccttcgggatgtac
acggccgaggagatcaggaaactaagtgtaaaagccataaccaaccctcgttacctagat
aacgtgggcaacccagcagtaaatggactgtatgatttgtctttgggaccacctgatgcc
aaagaagtgtgtactacttgtatgcaggacttcaacaactgcccaggacacctaggccac
atagatctgccactgactgtttacaatcctctattttttgataaattataccttctgatc
cgaggttcttgtttaaactgtcacttgctgacctgtactcgagctgtggttcacctattg
cttagccagctgaaggtcttggagaaggggttgcttcatgcggtctgtgatcttgaggcc
atcctgaataggtttttggatgaaaacacagatgcatctggtttagacattgaagaagag
ttaaatcgtcatgcgaatgaaatattacaaaataatcagctaggagatgagtgctcacat
gtaaaaaatgtgtgtgagtgtaggagtaaactgattgcacagttttggaaactgcatatg
acttcaaagagatgcccaaactgcaaatctagaagatcactggtacggaaagagcacaat
agcaaattgacagtaacctaccccactgtggtacagcagaagtctggcaaagaggccatc
ttggaggaaccagcaattatagatgaaactcagttggggaaaagagggtacttgacaccc
atcactgccaaagaccacattgtggctctgtggaagaacgaaggtttctttttaaatcac
ctcttctctggtctggaggttggtgagaattcaggattcagccctgatatgttctttcta
gatctccttgtggttccaccttcaaggtatcgtcctgtgaatcgtcttggagaccagatg
tttacaaatggtcaaactgtgaacttgcaggctgtcatgaaagatgtccaattaataagg
aagcttctggctttcatggctcaagaacaaagtcaaccaataaagcttgtagagaatgaa
atccagaaggtgacagatgagccgttggaatcactggatcgttcagtcctggctatgatc
tcaggacagagcactgcagataaactgtacaacatttggattcgtcttcagagccatgtc
aatattgtgttcgacagtgacatggacaaattaatgacagaaaaataccctggtatccgt
cagatactggagaaaaaggaaggactgttccgcaagcacatgatgggaaaacgtgtggat
tacgctgctcggtcagtcatttgccctgacatgtacattgctaccaatgagattggtatt
cctatggtatttgcgaccaaactgacttaccctcagccagtaactccgtggaatgtcaaa
gaactgaggcaggctgtcctaaacggtccaaatgttcaccccggtgcctccatggtcgtt
aatgaagacgggtcacgtacggtgttgagtgcgaccaaccagacccagagggaagccata
gctaaacagctcctcactccttccactggagccccaaaaccaggaatgaaaattgtatgt
cgccatcttaaaaatggagatgtcctcttactgaaccgtcagcccacccttcacagaccg
tccatccaagcccaccgggccaggatcctgccaggagaaaaggtgctgaggcttcactat
gccaactgcaaagcctacaatgctgattttgatggtgatgaaatgaacgctcattttcct
cagagcgagctgggccgggcagaagcctacgtgttagcctgcactgatgaacagtatctc
gttcctaaggatggcaagccactggctggtttgattcaggatcatatgatctctggtgcc
agcatgacgatccggggctgctttttcacaagagaacagtacatggagctgatatataga
ggactgacagacaaaaagggaagagtgaaaatccttccacctgccattatgaaaccacaa
cggttatggacaggaaaacagattgtttctactttgctaataaacgtaatccctgaaaat
caaatcccactgaatttgtctgggaaagctaagattggtggaagagcctgggtaaaaggg
ccccaaaacagaattcctggatctaaccttgattcaatgtgtgaatcccaggttatcatt
agaggtggggagttactttgcggggtcttggacaaagctcactatggcagctctgcctat
ggcctagtccactgttgccatgaagtctatggtggtgaaaccagcggcaaggtgcttaca
tgtctagctcgcctctttactgcctatttgcagctgtacaggggatttacaatgggagtt
gaagatattttggtcaaaccccaagcagaccacagaagacaccgaatcattgaagtgtcc
acccattgtggtaccagggctattagagctgcatttaacttgccagaaactgcatcatgt
gaagaaatccaagggaaatggcaggatgcccatctccacaaagaccagagggattttaat
atggttgatctgaaattcaaggaggaagtaaacaattatagcaacgaggttaacaaggca
tgcatgccccttggtctccacaggagcttcccagagaacaacttgcagttaatggtgcag
tcaggagccaaaggatccactgtaaatacaatgcagatttcgtgcttgctgggtcagatt
gagttggaaggtcgaaggccccctctgatggcatctggtaaatcattgccttgtttccag
ccttatgatttttcccctagatcagggggatttgtgactggcagatttctcacaggcatc
aaacctgctgaattcttctttcactgcatggctggcagggaaggtctggtggatacagct
gtcaaaaccagccgatctggataccttcaaaggtgtatcataaagcacttggaagggctg
gtagttcagtatgacctgagtgtgagggacagcgatggcagtgtggtgcagttcctttac
ggtgaagacgggctagatatccccaggacccagttcctgcaacccaagcagtttcctttc
attgcagagaactatgaggtgatacagaagtctaaacacatagatgaagttttatccaag
atcgatcctcagcaagcaaatcaacacttcagagctatcaaaaagtggcaaaccaagcat
caagtttctttgccaagagaaggagcttttgtgctgtattctcagaaaaaaatggcaaga
gtgagggaacagaccctaggaggggagatcataaatggcagagaccctgcaaccctacag
ttactgaagatgtggtatgaactggacgagaagagccggagaaaatatctaaagaggaca
tctaagtgtcctgaccccagcctggccgtctggcgtccagatatttattttgcatctgtt
tcagaagcatttgaaagtgaagtagagaattacatcagtgaatggaatgctcagaacaac
agcaactatgtaaaatcagagctttcttgtgatagattaaacagcttgttgcatttgaag
tggcagaggtccctgtgtgacccaggagaagctgtgggtctccttgctgctcaaagcatt
ggggagccttccacgcagatgactctgaacacctttcattttgctggcagaggtgaaatg
aatgtcacattgggtattccaaggttgcgggagatcctgatggtagctagtgctaacatt
aaaactccaatgatgagcgttcctgtgcttaataccaagaaagctcacaagaaggtgaaa
aggcttaagaaacagtttaccagagtgtgcttagcggaggtcttgcaaaaagttgaagtt
gaggagtctctgtgcatagaagggaaactaagcaaacaccgtctctaccaaatcaaattt
tatttcctgccatatgaatactatcgggaggagaagtgtctgaagccgagggacatctta
tacttcatggaaacacgattctttaaaatcttgctggaaacgattaaaaggaagagtgca
aagctggcatctttcaatgtggtcaatactcgtaaggcaactcggagggatctagatggc
agtggcggagaatcccaagaaaaccagacacaggatgatcatgaagctgacgaagaggaa
gcagggaggctcattgatggtgaagcagatgaaggagatgctgatgctacagatacaaaa
cgaagagagaagcaggaagaagaggttgattatgagagtgaggaagagaacagtgaggaa
aatggtgacgaaaatccagaagaggaagaaggcacactgcatgatgataaaagggctgag
gatgctgaagaaggggatcagaatgaatataattatcagactaaaaaagaaaaaggaccc
aaaccagagcattcaacacagctaagagttagtgctgtgatgagcagtcatccgtctata
gtcaactacacgtatgatatggaaaatgagctctggtgtgaggtttcactgaagcttcct
ctgatgaaggcatactttgacctctcctccatcctaacgtccctcatgcagaacacagtt
gtccatgagacaaaggggatcacgcggtgcttcttaaatgaaagcaccaataagaaaggg
gagaaagaatttgttttaaacaccgagggaataaaccttccagagctattcagatatgct
gatcttttggacctaagccggctttattccaatgacattcatgcaatggctaagacctat
ggaatcgaggctgccctgagggtgattgaaaaggaaattaaagatgtgtttgctgtgtat
ggtattgtggtagatcctcggcacctttctcttgtggcagattacatgtgttttgaaggt
gtttacaaaccactgaatcgttttggaatgcagtccaactcctcccctctgcaacagatg
acgtttgaaaccagctacaaatttttgaaggaagcgacaatgatgggtgcccatgatgag
ttgaggtctccttctgcatgcctggtggtaggaaaagttgtcaaaggagggactggtttg
tttgacctcaagcaaccccttacatag
DBGET
integrated database retrieval system
