Trachemys scripta elegans (red-eared slider): 117877912
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Entry
117877912 CDS
T07347
Symbol
NUP54
Name
(RefSeq) nucleoporin p54 isoform X1
KO
K14308
nuclear pore complex protein Nup54
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117877912 (NUP54)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117877912 (NUP54)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117877912 (NUP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Nup54_C
XhlA
Motif
Other DBs
NCBI-GeneID:
117877912
NCBI-ProteinID:
XP_034627452
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All DBs
Position
5:complement(12677458..12702074)
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AA seq
512 aa
AA seq
DB search
MAFNFGAAAGAAAANPTVLRMLSYNHKSPSAFGGFGTTTTAPGSAFSFSAPTNTGTTGLF
GATQNKGFGFGTGFGAAGTGTGLGTGLGTGLGFGGFSTQQQQPTLGGLFSQPAQAPSQSN
QLINTASALSAPTLLGDERDAILAKWNQLQAFWGAGKGYFNTNIAPVEFTQENPFCRFKA
VGFSCMPNNKDEDGLVVLVFNRKEVDIRNQQQQLVESLHKILGGNQTLTVNVEGVKTLPD
DQTEVVIYVVERSPNGTSRRVPATTLYAHFEQVNIKTTLQQLGVTLSMARTELSPAQIKQ
LLQNPPAGVDPIIWEQAKVDNPDPEKLIPVPMVGFKELLRRLKVQDQMTKQHQTRLDIIS
EDISELQKNQTTTMAKIAQYKRKLMDLSHRTLQVLIKQEIQRKSGYAIQADEEQLRVQLD
TIQCELNAPTQFKGRLNELMSQIRMQNHFGAVRAEERYYIDADLLQEIKQHLKQQQEGLS
HLISIIKDDLEDIKLIEHGLNESIPIRGGIFS
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atggccttcaacttcggggcagccgccggcgccgccgccgctaacccgacagtgttaaga
atgctgagctataaccacaaaagtcctagtgcatttggaggatttgggacaactaccacc
gctcctggatcagcatttagcttttctgctcctaccaacacaggcaccactggactgttt
ggtgctacccaaaacaaaggttttggatttggtaccggttttggcgcagcaggaactggt
accggcctaggtactggtttaggaactgggttaggctttggaggattcagtacccaacag
cagcagcccacattaggtggcttgttcagtcagcccgctcaggcaccttcccagtccaac
cagctgataaacacagccagtgctctttctgctcccacactcttgggagatgagcgagat
gctattttggcaaagtggaaccagttgcaagccttctggggggcaggcaaaggatatttt
aacaccaacattgctccggtggagttcacgcaggaaaacccattttgcagatttaaggct
gtgggcttcagttgcatgcccaacaacaaagatgaagatggcctggtggtcttagtcttc
aatagaaaagaagtagacattcgaaaccagcagcagcagctagtagaatcactgcacaaa
attttgggaggaaaccagacccttacggtcaatgtagaaggtgttaaaacactgccagat
gaccagactgaagttgtcatttatgttgttgagcggtcaccaaatgggacttccaggaga
gttccagccacaaccctctacgctcattttgaacaagttaacataaaaacaacactgcag
cagcttggcgttaccctctccatggccagaacggaactttctccagcacaaatcaaacag
cttctacagaatcctcctgctggtgttgatcctattatctgggaacaggccaaagtggat
aatcctgatcctgaaaagcttatccctgtgccaatggtaggtttcaaagagctgttgaga
cggttaaaggtccaagaccagatgactaagcagcatcagaccagattagatataatatct
gaagatattagtgagctgcagaaaaatcagaccacaaccatggcaaaaatagcccagtac
aagaggaaactaatggatctttctcacagaaccttacaggtgttaattaaacaagagatc
caaaggaaaagtggctatgccattcaggctgatgaggaacaacttcgtgtacagttagac
accattcagtgtgaactcaatgcacctactcagttcaagggtcgactaaatgaactgatg
tctcagatcaggatgcaaaatcattttggagcagttagggctgaagagaggtactacatt
gatgcagatctcttacaagaaatcaagcaacatttgaagcagcaacaagaaggcctgagt
catttgattagcataataaaagatgacctggaagatataaaactaatagaacatggattg
aatgagagcatccctatcagaggaggaatcttcagttga
DBGET
integrated database retrieval system
