Trachemys scripta elegans (red-eared slider): 117877934
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Entry
117877934 CDS
T07347
Symbol
SMARCA5
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 isoform X1
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117877934 (SMARCA5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117877934 (SMARCA5)
03036 Chromosome and associated proteins [BR:
tst03036
]
117877934 (SMARCA5)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
117877934 (SMARCA5)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
117877934 (SMARCA5)
RSF complex
117877934 (SMARCA5)
WICH complex
117877934 (SMARCA5)
B-WICH complex
117877934 (SMARCA5)
NORC complex
117877934 (SMARCA5)
BRF complex
117877934 (SMARCA5)
NuRF complex (fruit fly)
117877934 (SMARCA5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
HAND
Helicase_C
ResIII
DEAD
HDA2-3
Myb_DNA-binding
DBINO
AAA_14
Motif
Other DBs
NCBI-GeneID:
117877934
NCBI-ProteinID:
XP_034627495
LinkDB
All DBs
Position
5:52460408..52512919
Genome browser
AA seq
1039 aa
AA seq
DB search
MSAGQQEPPPDETLPPASTAPPATTNNGSEAAGAPPPAGGEADMEEVFDDSSPGKQKEIQ
EPDPTYEEKMQTDRANRFEYLLKQTELFAHFIQPAAQKTPTSPLKMKPGRPRIKKDEKQN
LLSVGDYRHRRTEQEEDEELLTESSKATNICTRFEDSPSYVKWGKLRDYQVRGLNWLISL
YENGINGILADEMGLGKTLQTISLLGYMKHYRNIPGPHMVLVPKSTLHNWMNEFKRWVPT
LRAVCLIGDKDQRAAFVRDVLLPGEWDVCVTSYEMLIKEKSVFKKFNWRYLVIDEAHRIK
NEKSKLSEIVREFKTTNRLLLTGTPLQNNLHELWALLNFLLPDVFNSADDFDSWFDTNNC
LGDQKLVERLHMVLRPFLLRRIKADVEKSLPPKKEVKIYVGLSKMQREWYTRILMKDIDI
LNSAGKLDKMRLLNILMQLRKCCNHPYLFDGAEPGPPYTTDMHLVTNSGKMVVLDKLLPK
LKEQGSRVLIFSQMTRVLDILEDYCMWRNYEYCRLDGQTPHDERQDSINAYNEPDSSKFV
FMLSTRAGGLGINLATADVVILYDSDWNPQVDLQAMDRAHRIGQTKTVRVFRFITDNTVE
ERIVERAEMKLRLDSIVIQQGRLVDQNLNKIGKDEMLQMIRHGATHVFASKESEITDDDI
DGILERGAKKTAEMNEKLSKMGESSLRNFTMDTESSVYNFEGEDYREKQKMAFTEWIEPP
KRERKANYAVDAYFREALRVSEPKAPKAPRPPKQPNVQDFQFFPPRLFELLEKEILYYRK
TIGYKVPRNPDLPNAAQAQKEEQLKIDEADPLNDEELEEKEKLLTQGFTNWNKRDFNQFI
KANEKWGRDDIENIAREVEGKTPEEVIEYSAVFWERCNELQDIEKIMAQIERGEARIQRR
ISIKKALDTKIGRYKAPFHQLRISYGTNKGKNYTEEEDRFLICMLHKLGFDKENVYDELR
QCIRNSPQFRFDWFLKSRTAMELQRRCNTLITLIERENMELEEKEKAEKKKRGPKPSSAQ
KRKMDGTPDGRGRKKKLKL
NT seq
3120 nt
NT seq
+upstream
nt +downstream
nt
atgtccgccgggcagcaggagccgccgccggatgagaccctgccccccgccagcaccgcg
ccccccgcgaccactaacaacggcagcgaggccgcgggggcaccacctcctgccgggggc
gaagctgacatggaggaagtttttgatgattcatcaccaggaaaacaaaaagaaatccag
gaaccagatcctacatatgaagagaaaatgcaaacagacagagcaaacagatttgagtat
ctgttaaagcagactgagctgtttgcgcatttcattcagcctgctgctcaaaagactcca
acttcacctttgaaaatgaaaccaggacgtccacgaataaaaaaggacgagaaacagaat
ctgctgtcagttggcgactatcgacatcgtagaacagaacaggaagaagatgaggagctg
ttgacagaaagctccaaggcaactaacatatgcactcgatttgaagattctccatcatat
gtaaaatggggtaaactgcgtgattatcaggtccgagggttgaactggctcatctctttg
tatgagaatggcatcaatggtatcctggcagatgaaatgggtcttggaaagacactgcaa
acgatttctcttcttgggtacatgaaacactacagaaatattcctggccctcacatggta
ttggttcccaaatccactttacacaactggatgaatgagttcaagagatgggtaccaaca
cttcgagcagtttgtttgataggtgacaaagaccaaagagctgcctttgtccgagatgta
ttattgccaggagaatgggacgtctgtgtaacatcatatgaaatgcttattaaagagaaa
tctgtgttcaaaaaatttaactggaggtatctagttatagatgaagcccacaggatcaaa
aatgaaaaatcaaagttgtcagaaattgtgagggaattcaagacaacaaatcggctgctg
ttaactggaactccacttcagaacaatttgcatgaactctgggcacttctcaacttcctt
ttgccagatgtctttaactcggctgatgacttcgattcatggtttgatacaaataactgt
cttggagatcaaaagctggtggaacgtctccacatggtgctaaggccattcctccttcgc
cgtattaaagctgatgtagaaaagagtttgcctccaaagaaggaagttaaaatttatgtg
ggtctaagcaaaatgcaaagagaatggtatacacgaatcttaatgaaggatatagatata
ttgaactctgctgggaagctggacaaaatgagactgttgaacatcctgatgcaattgcga
aaatgttgtaatcatccttacctctttgatggagcagaacctggtccaccttacacaaca
gatatgcatttggttaccaacagtggcaaaatggtggtattggataaattgcttccaaag
ttgaaagaacaaggctcacgagtactaatctttagtcagatgacaagagtactagacatc
ttggaagattactgtatgtggcgaaattatgagtattgtagattggatggacaaacacct
catgatgagagacaagattctattaatgcatataatgaacctgacagctccaagtttgtg
tttatgttgagcacgcgtgccggtggtcttggaatcaatctggctactgctgatgtcgta
attctttacgattcagactggaatccacaagtagatcttcaagctatggaccgagcacac
agaattggccagacaaaaactgttagagtgttcagatttatcacagacaacactgtggag
gaaagaatagtggaaagagcagaaatgaaacttcgtttggattccatagtcattcaacaa
ggaagactggtggatcaaaatctgaataaaataggaaaagatgaaatgctgcagatgatt
cgacatggagctacgcatgtgtttgcttcaaaggagagtgagattactgatgatgatatt
gatggtattttggaaagaggtgcaaaaaagactgcagaaatgaacgagaaactctcaaag
atgggcgaaagttcacttagaaattttacaatggatacagagtccagtgtatacaacttt
gaaggggaagattatagagagaaacaaaagatggcattcacagagtggattgagccacct
aaacgagaaagaaaagccaactatgctgttgatgcttacttcagggaagctcttcgtgtc
agtgaaccaaaagcaccaaaagctccacgacctccaaaacagcctaatgttcaagatttc
cagttctttcctccacgtttgtttgaactactagaaaaagagattctgtattacagaaaa
actattgggtacaaggtacctcgtaatccagacttgccaaatgcagcccaagcacaaaag
gaagaacagcttaaaattgatgaagctgatccccttaatgatgaagagttagaagaaaag
gagaaactactaacacagggatttaccaattggaataaaagagattttaaccagttcatc
aaagctaatgaaaaatggggccgtgatgatattgaaaatatagctcgtgaagttgaagga
aaaaccccagaggaagtcattgagtattcagctgtgttctgggaaagatgcaatgaactc
caggacatagagaagataatggctcagattgaaagaggagaagctagaattcagaggcgg
attagtataaaaaaagcacttgacacaaagattggcaggtataaagcacctttccaccag
ttgagaatatcgtatggtactaacaaagggaagaattatacagaggaggaggatcgcttt
ctaatctgtatgcttcacaagttaggatttgataaagaaaatgtttatgatgaattaaga
cagtgtattcgaaactctccccagttcagatttgactggttcctcaagtccagaactgca
atggagctacagaggagatgcaataccttaattactttgattgaaagagaaaacatggaa
ttggaagaaaaggagaaggcagagaagaagaaacgtggaccaaagccttcttcagcacaa
aagcgtaaaatggatggtactcctgatggtcgaggcaggaaaaagaagttaaagctgtga
DBGET
integrated database retrieval system
