Trachemys scripta elegans (red-eared slider): 117878037
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Entry
117878037 CDS
T07347
Symbol
PDGFRA
Name
(RefSeq) platelet-derived growth factor receptor alpha isoform X1
KO
K04363
platelet-derived growth factor receptor alpha [EC:
2.7.10.1
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04010
MAPK signaling pathway
tst04020
Calcium signaling pathway
tst04144
Endocytosis
tst04510
Focal adhesion
tst04540
Gap junction
tst04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117878037 (PDGFRA)
04020 Calcium signaling pathway
117878037 (PDGFRA)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117878037 (PDGFRA)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117878037 (PDGFRA)
04540 Gap junction
117878037 (PDGFRA)
09142 Cell motility
04810 Regulation of actin cytoskeleton
117878037 (PDGFRA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tst01001
]
117878037 (PDGFRA)
09183 Protein families: signaling and cellular processes
04090 CD molecules [BR:
tst04090
]
117878037 (PDGFRA)
Enzymes [BR:
tst01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.10 Protein-tyrosine kinases
2.7.10.1 receptor protein-tyrosine kinase
117878037 (PDGFRA)
Protein kinases [BR:
tst01001
]
Receptor tyrosine kinases (RTK)
PDGFR family [OT]
117878037 (PDGFRA)
CD molecules [BR:
tst04090
]
Proteins
117878037 (PDGFRA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PK_Tyr_Ser-Thr
Pkinase
Ig_3
I-set
ig
Ig_2
VEGFR1-3_N_Ig-like
VEGFR-1-like_Ig-like
V-set
Motif
Other DBs
NCBI-GeneID:
117878037
NCBI-ProteinID:
XP_034627787
LinkDB
All DBs
Position
5:complement(88740552..88790788)
Genome browser
AA seq
1091 aa
AA seq
DB search
MLSAVMGTSPRTFLLLGCLLTGPWLTFCQLPLPTVLPNRDEMVVQLNASFTLKCSGDSEV
TWQYPMAEGSHRIDIRNEENNSGLFVTLLEVGNASAAHTGLYTCYYNHTQEEDGEVEGKD
IYIYVPDPDIPFVPLLPEDQFILVEDGDSTIIPCRTSDPNAEVALVNSEAKVVYAYYDSK
QGFLGNFPAGSYTCQTTVKEVEFKSDQFFIYILKATSELPVEIEALKTVYKTGETIVVTC
VVFDNEVVNLQWNYPGKVKEKGVIKVDDIKVPSQKLVYTLTIPEASVKDTGDYECMARHA
TKEVKENKRVVITVHDKGFIHLDPQFSPLEAVNLHEVKNFVVDVQAYPAPKMFWLKDNVT
LTENLTEIVTSANKINETRVQSILKLIRAKEEDSGDYTLVAENGEETKSYTFSLLIQVSA
SILKLVDHHGSGGGQTVQCLAKGTPFPDVEWLICKDIKKCSNDTSWMLLTNNISNIHMEA
YRVDKDQVKSQVTFQKVEETLVVRCMARNTLGAVTRELKLVAPTLRSELTVAAAVLVLIV
IVIISLIVLVIIWKQKPKYEIRWRVIESISPDGHEYIYVDPMQLPYDSRWEFPRDGLVLG
RILGSGAFGKVVEGTAYGLSRSQPVMKVAVKMLKPTARSSEKQALMSELKIMTHLGPHLN
IVNLLGACTKSGPIYIITEYCFYGDLVNYLHKNRDNFLSRHPEKPKKDLDIFGMNPADES
TRSYVILSFENNGEYMDMKQADTTQYVPMLERKEGSKYSDIQRSMYDRPASYKKKSVSEP
EVKNLLSDDNSDSLSLLDLLSFMYQVARGMEFLASKNCVHRDLAARNVLLAQGKIVKICD
FGLARDIMHDSNYVSKGSTFLPVKWMAPESIFDNLYTTLSDVWSYGILLWEIFSLGGTPY
PGMMVDSSFYNKIKSGYRMAKPDHATSEVYEIMVKCWNSEPEKRPSFYHLSEIVENLLPG
EYKKSYERIHLDFLKSDHPAVTRMRVDCDNTYIGVTYKNEDKLKDRESGFDEQRLSADSG
YIIPLPDIDPVSEDELGKRNRHSSQTSEESAIETGSSSSTFIKREDETIEDIDMMDDIGI
DSSDLVEDSFL
NT seq
3276 nt
NT seq
+upstream
nt +downstream
nt
atgttgtccgcagtgatgggtacttccccaaggacattcctgctcctgggatgtctcctg
acaggaccatggctaactttctgccagcttccattgccgactgttcttccgaatagagat
gaaatggtcgtgcaactgaatgcctcgtttactctgaaatgctctggagacagcgaagtg
acctggcaatacccaatggctgaaggaagccacagaatagacattagaaatgaagagaac
aacagtggtctctttgtgactttgctggaagtggggaatgcctcagctgctcataccgga
ttatacacttgttactacaatcatactcaagaggaggacggggaggtggaggggaaggat
atctacatctatgtgcctgatccagatatacccttcgttcctctactaccagaggatcaa
ttcatcctagtagaagatggtgattccaccattatcccttgtcgtacaagtgaccctaat
gctgaagtagctttagttaacagtgaagccaaggtcgtatatgcctattatgacagcaaa
caaggcttcctaggaaattttcctgcaggctcatacacatgccaaacaactgttaaagaa
gtggagttcaagtcagatcagtttttcatctacattttgaaagctacttcagagctgcca
gttgagattgaggcccttaaaactgtatataaaacaggcgaaacgattgttgtaacttgt
gtggtctttgacaacgaggtggttaatttacagtggaattatccagggaaagtgaaagaa
aaaggtgtgataaaagttgatgacattaaagttccctcccagaagctggtttacactttg
accattcctgaggcttcagtgaaagataccggggattatgaatgtatggcccgacatgca
accaaggaggttaaagaaaataagagagtagtcattacagttcatgataaaggattcatt
catctggacccccaatttagccctttggaagctgtcaatttacatgaggtcaaaaatttt
gtagtggatgtgcaggcgtacccagctccaaaaatgttctggctgaaggacaatgtgact
ctgactgagaatcttacagagattgttaccagtgcaaacaagatcaatgagacaagggtc
caaagtatattaaaactgattcgggccaaggaagaagacagtggagattatactttggtt
gctgaaaatggagaagagactaaaagctatactttctcgttgctaatacaagtttcagct
tcaattctaaaactggtggatcaccacggctctggagggggacagacggtccaatgcttg
gcaaaagggacgcctttccctgacgtggaatggctgatttgcaaggacattaaaaaatgc
agtaatgatacctcatggatgcttctgactaacaacatctcaaatatacacatggaggct
tatcgggttgataaggaccaggtgaaaagccaggtgaccttccaaaaggtagaagaaacc
ctggtagtacggtgcatggcgaggaacactcttggtgccgttactcgggaactgaagctt
gtggctcctacattgcgatcagaattaactgtggctgcagcagtcctagtgttaatagtg
attgtgattatttcactgattgtcctggtcatcatatggaaacagaaaccaaagtatgag
ataagatggagagtaattgagtctatcagccctgatggccatgagtacatttatgtggac
ccaatgcaactgccctatgactcaagatgggagtttcctagagatggattagtacttggt
cgaatccttggttcgggcgcgtttgggaaagtagttgaaggaactgcatatggattaagt
cgctctcaaccagtgatgaaggtagctgtgaaaatgctgaaacccacagctagatccagt
gaaaaacaggcactaatgtctgaactgaagataatgacacatcttgggcctcatttgaac
attgtgaatctcttaggagcttgtactaaatcaggtccaatttacatcattactgaatac
tgcttttatggggatttggtaaactacctgcataaaaacagggataatttcctgagccga
catccagaaaagccaaagaaggacttggacatttttgggatgaacccagctgatgaaagc
acaagaagttatgtcattttatcctttgaaaacaatggcgaatacatggacatgaaacaa
gctgatacgactcagtatgtgccaatgctggaacggaaggagggttctaagtattcggat
atccagagatcaatgtatgatcgacctgcttcatataagaaaaaatctgtgtcagaacca
gaagtcaaaaacctgctttctgacgacaattctgacagcctcagtttgctggatttacta
agcttcatgtaccaagttgcacgggggatggagttcttggcatctaaaaattgtgtgcac
cgtgacttggcagctcgtaatgtccttctggctcaaggaaaaattgtgaagatctgtgac
tttggtctggctagggacatcatgcatgattccaactatgtctccaaaggcagcactttt
ctcccagtgaaatggatggcacctgaaagcatttttgacaatctgtacacaacattaagt
gatgtctggtcttatggcattctgctgtgggagatattttctcttggtggcacaccatac
cctggcatgatggttgattcttctttctacaacaagataaaaagtggctaccgaatggca
aaacctgaccatgctaccagtgaagtgtatgagattatggtgaaatgttggaacagcgaa
ccggagaaaagaccttctttttaccatttgagtgaaattgtggagaatctgttgcctggc
gaatacaagaagagctatgaaaggattcatctggacttcctgaaaagcgaccatccagcg
gtcacacgcatgagagtggactgtgacaacacctacatcggtgtcacttataagaatgaa
gacaagctaaaggacagggagagtggatttgatgagcagaggttgagcgctgacagtggc
tacatcatccccctgcccgacattgatcccgtctccgaagatgaacttggcaaaagaaac
aggcacagttcccagacatctgaagaaagtgctattgagactggttcaagcagctctacc
tttatcaaacgagaggatgagaccattgaggacattgacatgatggatgacattggaata
gattcctcagacctggttgaagacagctttctgtaa
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integrated database retrieval system
