Trachemys scripta elegans (red-eared slider): 117878159
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Entry
117878159 CDS
T07347
Symbol
COL25A1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117878159 (COL25A1)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117878159 (COL25A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117878159
NCBI-ProteinID:
XP_034628050
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All DBs
Position
5:complement(31493968..31908242)
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AA seq
692 aa
AA seq
DB search
MLGKSQEAKRQDGNGEPSCLGGQRCCPSWTLPSSSLLAAFLSVVAVASCVYLGVKTSDLH
ARVSAIESAQGDFSAAASYQLLPGFSLDQLNSMMQEKVERLLAQKSYEHLAKIRIAREAP
PECNCPAGPPGKRGKRGRRGETGPPGPPGPKGEKGDQGDQGPRMVFPKINHGFLSADQQL
IKRRLIKGDQGQAGPPGPPGPPGPRGPPGDTGKDGPRGMPGVPGEPGKPGEQGWMGPQGP
PGQKGSVGVPGVPGIDGHMGEPGLPGAVGERGAPGLKGDPGERGEKGDAGENGSKGDMGE
KGDPGSSAAGIKGEPGESGRPGQKGEPGLPGLPGLPGIKGEPGFIGPQGEPGLPGLPGTK
GERGEAGPPGKGERGEPGVPGPKGKSGESGTRGPKGSKGDTGDKGDSGAIGPRGPPGQKG
DQGATEIIDYNGNIHEALQRITTLTVTGPPGPPGPQGAQGPKGEPGSQGTPGAEGEQGPK
GSKGDVGESGMPGEKGGIGLPGLPGANGMKGEKGDGGLPGPQGPSIIGPPGPPGPHGSPG
PMGPHGLPGPKGEPGLNGLKGLKGEPGQKGDRGPLGLPGASGLDGKPGPRGMDGPLGPHG
PAGPKGDRGEKGAVGDPGSRGPYGLPGKDGEPGLDGFPGPRGEKGDLGEKGEKGFRGIKG
EKGEPGQPGLDGLDAPCQLGPDGLPMPGCWQK
NT seq
2079 nt
NT seq
+upstream
nt +downstream
nt
atgttggggaaaagccaagaagccaaaagacaggatggcaacggggagccgagctgcctt
gggggacagcgctgctgtcctagctggactctgccctccagttcgctgctggctgctttt
ctgtcagtggtggctgtagcctcctgtgtgtatctgggggtgaagaccagtgatctacac
gcgagggtctctgccatcgagagcgcccaaggggacttctctgctgctgcttcttaccag
ctgctgcccggtttctccctggatcagctaaattcaatgatgcaagaaaaagtggagcga
cttctagctcagaaatcctacgagcatttggcaaaaataagaatagcaagagaagcgcct
ccagagtgcaactgcccagcaggccctccagggaaacgaggtaagaggggcagaagagga
gagaccggacctcctggtcctcctggtccaaaaggcgagaagggagatcaaggtgatcag
ggccctcggatggtgtttcctaaaatcaatcatgggtttctctctgctgatcagcagctc
attaaacgccgcctcattaagggtgatcaaggacaagctggaccccctggtcctccaggg
ccaccaggacccagaggtcctccaggagacactggcaaagatggcccccgagggatgcct
ggagtaccgggagagccaggaaaaccaggtgaacaagggtggatggggcctcagggacct
ccaggacaaaagggttctgttggagtgcctggtgttccaggaatagatggacatatgggt
gaaccaggtttgcctggtgcagtgggagaacgcggagcaccagggcttaagggtgaccct
ggagaacgaggagaaaagggtgatgctggagaaaacggatccaaaggtgacatgggtgaa
aagggtgatcctggatcttctgctgcaggaattaagggagaacctggagaatctggtcgg
ccaggacaaaagggtgaaccaggtcttcctgggcttcctggactccctgggataaagggt
gaaccaggtttcattggtccacagggagaacctggattaccagggttaccaggaacaaag
ggtgaaagaggagaagcagggcctcctggaaagggtgagcgaggtgaacctggagttcct
gggccaaaggggaaatcaggcgaatctggaactagaggcccaaaggggtcaaagggtgat
actggagacaaaggtgattcaggagcaataggtcctaggggcccgcctggacaaaaggga
gatcaaggtgcaacagagataattgactacaatggcaatatccatgaagctctgcagagg
attaccaccctaactgtcacgggtccaccagggccacccggacctcaaggagcacaaggc
ccaaagggtgaaccaggatcccaaggaactccaggagctgaaggggagcagggtcctaaa
ggctcaaagggggacgtgggtgagtctggcatgccaggagaaaagggaggaattggactc
ccaggcttaccaggagccaatggtatgaaaggagaaaaaggagatggtggtttgcctggt
cctcaaggtccttctatcataggacccccaggaccaccagggccgcatgggtcaccaggc
cctatgggaccccatggactgcctggcccaaagggtgaaccagggttaaatggtcttaaa
ggattgaagggtgaaccaggtcaaaagggtgacagagggccccttggtcttccaggagca
tctggcttagacggaaagccaggaccccggggtatggatggcccactcggtccacatggc
ccagcaggtcctaaaggagacagaggtgaaaagggagctgttggtgaccctggatccaga
ggaccatatggtttgcctggcaaagatggcgagcctggccttgatggtttccctggtcct
cgaggagaaaagggtgatctaggcgaaaagggagaaaagggattccgtggaattaagggg
gaaaaaggggagccaggccagccaggcctggatgggctggatgccccttgccaattgggg
ccggatggattaccaatgcccggctgctggcaaaagtga
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