Trachemys scripta elegans (red-eared slider): 117878191
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Entry
117878191 CDS
T07347
Symbol
PDLIM5
Name
(RefSeq) PDZ and LIM domain protein 5 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117878191 (PDLIM5)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tst04990
]
117878191 (PDLIM5)
Domain-containing proteins not elsewhere classified [BR:
tst04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
117878191 (PDLIM5)
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
Motif
Other DBs
NCBI-GeneID:
117878191
NCBI-ProteinID:
XP_034628114
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Position
5:complement(18721875..18920780)
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AA seq
899 aa
AA seq
DB search
MSNYSVSLVGPAPWGFRLQGGKDFNMPLTISRLNDGGKAARAQVGIGDVVLTIDGTSTDG
MTHLEAQNKIKACTGNLNMNLQRAHSAPKPDPVPVQKGEPKEVVKPVPIASAVAPKVTST
VNMAYNKTPRPFGAVPSAKVTSIPSPSSAFTPAHATAPSCASPSPLATVTPPPFTASGLH
VNAKSSTDQRSPALNAAKTAVNVPWQPNTYNTTLNTYSNDNAQDVAEGQRRGFKESQVDN
KQQNGPPRKHIVDTYTEFSHTPTHRDASKKRLIEDTEDWHPRTGTTQSRSFRILAQITGT
EHMKEPETETTKKTKESQTENGDPSMSADLPNGIEAQNSSLDLNKHSVATQTIEMTPASE
PPSTPLPAMRPESTSDSSPLAKSSPVSVPSPRLPGHVSSSPHGRKLLFDNPLEALPKCAP
HPPAVVQVLSVSSQVATVSKVASTYARKITQSAELSAPGPASLITNEAGKESSLSDKHTV
ATQTSEPPLLTVAPAEPPCAVQHVESIPSVPPIPDSFYTRKALPENPLEDLPKFSPIPVP
SPSRQSLKVISSAATAVSAAVAVRARLSDPNVYRSLLDALLITPITKPPPLQSIRPSRKS
TSALELQKKESDSLEASQPVAYAAASVRNMPVSPDKTDTRPTAANITSATAFKPTGPQSA
VKYSGWQPSNQPAPASGWTSNNMTPSGATAPSDKSVTQPQLTEQDTLVQRAEHIPAGKRT
PMCAQCNQVIRGPFLVALGKSWHPEEFNCAHCRTSMAYIGFVEEKGALYCEICYEKFFAP
ECSRCQRKILGEVINALKQTWHVSCFVCVACHNPIRNNVFHLEDGDPYCETDYYALFGTM
CYGCEFPIEAGDRFLEALGHTWHDTCFVCSVCCDSLEGQTFFSKKDKPLCKKHAHSVNF
NT seq
2700 nt
NT seq
+upstream
nt +downstream
nt
atgagcaactacagtgtgtctttggtcggccctgctccttggggttttaggcttcaaggt
ggaaaagacttcaacatgcctttgaccatctctaggttaaacgatggtggcaaggcagct
agagcccaggtcgggataggtgatgtggttctcaccattgatgggacaagtacagatggg
atgactcatctggaagcacaaaacaagatcaaggcctgtacaggcaacttgaacatgaat
ctgcaaagagcgcactctgcaccaaagcctgatcctgttcctgtacaaaagggagaacca
aaagaagtagttaagcctgtgcctattgcatctgctgttgcacccaaagtcacttccaca
gtgaacatggcctacaataagacaccaaggccatttggagctgtaccttccgcaaaagtc
acttccattccatcaccgtcatctgccttcaccccagcccatgcgactgctccatcatgt
gcttccccttcaccattggccactgtcacgcctcccccattcactgcatctggactgcat
gttaatgccaaatccagtactgaccagcgttcacctgcactgaatgctgctaaaactgca
gttaatgtcccatggcagcccaacacatacaatacaaccctgaacacgtattccaacgac
aatgctcaggatgtggcagagggacaaagaagaggattcaaagagagccaggttgacaat
aagcagcaaaatggtccaccaaggaagcacattgtggatacctatacagagttttcccac
acacccactcatagagatgccagcaaaaaacgattgattgaagatactgaagactggcac
ccgaggacaggaactacccaatcgcgttcttttcggatccttgcccaaatcaccggcact
gaacacatgaaagaaccagaaaccgagactacaaagaaaacaaaggagagtcaaacagaa
aatggagaccccagcatgtctgcagatctacctaatggaatagaagcccagaattcctct
ttagatctaaataaacattcagtagctactcagaccatcgagatgacacctgcatcagaa
cctccatcaacaccgttaccagctatgagaccagaatctacttcagacagttcaccgtta
gccaagtcttcacctgtcagtgttccctctcccagacttcctggacatgtctcaagttca
ccccatgggagaaaactcttgtttgacaatcctttggaagccttacctaagtgtgcacct
catccacctgctgttgttcaggttttaagtgtcagtagtcaagttgccacagtgtctaaa
gtggcgtctacttacgctaggaaaataactcaatctgccgagttgagtgctccaggtcca
gcaagcttaataacaaatgaagccggtaaagaaagttctctatctgataagcacacagta
gctacacagacctctgagccacccttgctcacagttgcaccagcagagccaccttgtgca
gtccaacacgtggaatccataccttcggtgcctcctattcctgacagcttctacactaga
aaagcgctgcctgaaaatccattggaagatctgccaaagttttctcccatccctgttcct
tctccttccaggcagagcttaaaagttataagcagtgctgccactgccgtgtctgctgct
gttgctgtacgggccagactctccgatcctaacgtctaccgttcgctcttggatgccctt
ctcatcacccctatcactaaacctcctcctctacaaagtatcaggccctcaaggaaatca
acaagtgctttggagttgcaaaagaaagagagtgattccctggaggcttcacagcctgtt
gcttatgccgctgcctctgtgaggaacatgcctgtaagtccagacaaaactgacaccaga
ccaactgcagccaatatcacatctgctacagcctttaaaccaaccggacctcagagtgct
gtcaaatactcaggttggcaaccttcaaaccaaccagctcctgcaagtggatggacatca
aacaatatgacaccgtctggtgcaactgcaccaagcgataagtctgtgacacagcctcaa
ctaacagagcaagatactttggtgcagagagcagagcatattccagcaggaaagcgtact
cctatgtgtgctcagtgtaaccaggtcattaggggacctttcctggtggctttggggaaa
tcctggcatccagaggagttcaactgtgctcactgcagaacctctatggcttacattggg
tttgtggaagagaagggggctctctattgcgagatctgctatgagaaattctttgcccct
gaatgttctcgatgccagaggaagatacttggagaagtaatcaatgctttgaaacaaact
tggcatgtttcctgtttcgtatgtgtggcctgccataatcccattcgcaataatgtcttc
catttggaagatggggatccctattgtgagacagattactacgccctcttcggtaccatg
tgctatggctgtgaattccccattgaagctggagacaggtttcttgaagccctgggccac
acctggcatgacacctgctttgtgtgctcggtatgttgtgacagtttggagggtcagacg
ttcttctccaaaaaagataagccactgtgcaagaagcatgctcactcagtgaatttctga
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