Trachemys scripta elegans (red-eared slider): 117878257
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Entry
117878257 CDS
T07347
Symbol
LSM6
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03018
RNA degradation
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117878257 (LSM6)
09123 Folding, sorting and degradation
03018 RNA degradation
117878257 (LSM6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117878257 (LSM6)
03041 Spliceosome [BR:
tst03041
]
117878257 (LSM6)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117878257 (LSM6)
mRNA degradation factors
5'-3' decay
Lsm complex
117878257 (LSM6)
Spliceosome [BR:
tst03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
117878257 (LSM6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
117878257
NCBI-ProteinID:
XP_034628245
LinkDB
All DBs
Position
5:53862900..53875713
Genome browser
AA seq
80 aa
AA seq
DB search
MSLRKQTPSDFLKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIALEQTEEYVNGQLKNKY
GDAFIRGNNVLYISTQKRRM
NT seq
243 nt
NT seq
+upstream
nt +downstream
nt
atgagtctacggaagcaaacccctagtgacttcttaaaacaaattataggaaggcctgtt
gttgtaaagttaaattctggagttgattatcgaggtgtcctggcttgcctggatgggtat
atgaacatagctctggagcagacagaagaatatgtaaatggtcaattaaagaacaaatat
ggggatgcatttatccgaggaaataatgttctgtatataagcacacagaagaggaggatg
tga
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