Trachemys scripta elegans (red-eared slider): 117878361
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Entry
117878361 CDS
T07347
Symbol
DHX15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117878361 (DHX15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117878361 (DHX15)
03009 Ribosome biogenesis [BR:
tst03009
]
117878361 (DHX15)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117878361 (DHX15)
Spliceosome [BR:
tst03041
]
Complex A
U2 snRNP components
U2 related factors
117878361 (DHX15)
Complex B
117878361 (DHX15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117878361 (DHX15)
Ribosome biogenesis [BR:
tst03009
]
Eukaryotic type
90S particles
Helicases
117878361 (DHX15)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
Flavi_DEAD
AAA_29
AAA_25
Atrophin-1
Motif
Other DBs
NCBI-GeneID:
117878361
NCBI-ProteinID:
XP_034628425
LinkDB
All DBs
Position
5:105678724..105734317
Genome browser
AA seq
681 aa
AA seq
DB search
MSKRHRLDLGDDYTSSKKRAMADGKDRDRDRDREDRSKDRDRDRDRERDRDRERDKEKDL
RPSSNSMLLVGGGLPPLKPAILPQGINPFTNLPHTPRYYEILKKRLQLPVWEYKERFTDI
LIRNQSFVLVGETGSGKTTQIPQWCVDYMRSLPGPKRGVACTQPRRVAAMSVAQRVADEM
DVMLGQEVGYSIRFEDCSSAKTILKYMTDGMLLREAMNDPLLERYGVIILDEAHERTLAT
DILMGVLKEVVRQRSDLKVIVMSATLDAGKFQIYFDNCPLLTIPGRTHPVEIFYTPEPER
DYLEAAIRTVIQIHMCEEEEGDLLLFLTGQEVYNPRIRVESLLVTAISKASAQQRAGRAG
RTRPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDFMDPPAPE
TLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCDYNCSNEILSITAML
SVPQCFVRPTEAKKAADEAKMRFAHIDGDHLTLLNVYHAFKQNHESVQWCYDNFINYRSL
MSADNVRQQLSRIMDRFNLPRRSTDFTSRDYYINIRKALVTGYFMQVAHLERTGHYLTVK
DNQVVQLHPSTVLDHKPEWVLYNEFVLTTKNYIRTCTDIKPEWLVKIAPQYYDMSNFPQC
EAKRQLDRIIAKLQSKEYSQY
NT seq
2046 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagcgccatcgcctagacctgggggatgactacacctccagcaagaagcgcgcc
atggctgacgggaaggatcgagatcgtgacagggatcgtgaagatcgttctaaagaccgt
gacagagatcgtgacagagagagagatcgtgacagagaaagagacaaggaaaaagatttg
cgtccttcatctaattctatgcttcttgttggtggtggattaccacctttaaaaccagca
atacttccacagggtattaatccattcacaaacctaccacatacacctcgatactatgaa
atcctaaagaagcggcttcagctccctgtctgggagtataaggaaagatttacagatatc
ctgattaggaaccagtcttttgtactggttggagagaccgggtctggtaaaacgacacag
atccctcagtggtgtgttgactacatgcggtctttacctggacctaagagaggtgtagct
tgtacccagccgaggagagtagctgcaatgagtgtggcacaacgagttgctgatgaaatg
gatgtgatgttgggccaggaagttggttactctattcgatttgaagactgcagtagtgca
aaaacaattctgaagtatatgactgatggtatgttacttcgtgaagctatgaatgaccct
ttgttggagcgctatggtgttataattcttgacgaggcccatgaaagaacattggctact
gatattttgatgggagttctgaaagaggttgtaaggcaaagatctgacttgaaggttata
gttatgagtgctactctagatgctggcaagttccagatttattttgataattgtcctctc
ctaactatccctggtcgtacccatcctgtggagattttctatactccagagccagagagg
gattaccttgaggcggctattcgaacagtaatacagattcacatgtgtgaagaagaggaa
ggagatcttctactctttcttactggacaagaggtatacaatcctcgtattagagttgaa
tctctattggtgacagcgatcagcaaagcatctgctcagcagagagctggccgtgctggt
cgtactaggccaggcaagtgcttcaggctctatacggagaaggcatacaaaactgaaatg
caggacaacacctaccctgaaattctgagatccaatttgggatctgtggtgttacagctg
aaaaaacttggtatagatgacttggtgcactttgattttatggacccaccagctcctgaa
actttgatgagagccctagagcttttgaattatctagctgctttaaatgatgatggagac
ctgactgaattgggatccatgatggctgaatttccactggatccacagctggctaaaatg
gttattgcaagttgtgactacaactgttctaatgagatcctatctattactgccatgttg
tcagtcccacagtgttttgttcgccccacggaagccaagaaagcagcagatgaagccaag
atgaggtttgcccacatagatggagatcatttgaccttgctgaatgtctatcatgctttc
aaacaaaatcatgagtcggttcagtggtgttatgacaacttcattaactacaggtccctg
atgtctgcagacaatgtacgccaacagctgtcacgaatcatggatagatttaatttgcct
cgtagaagtacagactttacaagcagagactattatatcaatataagaaaggctttggtt
actgggtattttatgcaggtggcacatttggagcgaacagggcattacttaacagtgaag
gataaccaggtggtgcagttacatccttccacagttcttgatcacaaacctgaatgggtg
ctttataatgaatttgtccttacaacaaagaactacatccgcacatgtacagatattaag
ccagaatggttggtgaaaattgcccctcaatattatgacatgagcaatttcccacagtgt
gaagcaaagagacagttggatcgcatcattgccaaacttcagtccaaggaatactcacag
tactga
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integrated database retrieval system
