Trachemys scripta elegans (red-eared slider): 117878611
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Entry
117878611 CDS
T07347
Symbol
SYNPO2
Name
(RefSeq) synaptopodin-2 isoform X1
KO
K24066
synaptopodin-2
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117878611 (SYNPO2)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tst04990
]
117878611 (SYNPO2)
Domain-containing proteins not elsewhere classified [BR:
tst04990
]
PDZ domain-containing proteins
Other PDZ domain-containing proteins
117878611 (SYNPO2)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
Calsarcin
PDZ_2
Motif
Other DBs
NCBI-GeneID:
117878611
NCBI-ProteinID:
XP_034628848
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Position
5:37832997..37948903
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AA seq
1273 aa
AA seq
DB search
MGTGDYICISMSGGAPWGFRLQGGKEQKQPLQIAKVRSKSKASKAGLCEGDEVVSINGKS
CADLTYSEVITLMEGLTDALQLLIKRSSNGLHESLSPETETRSHDKIKNEEYRESTTLQI
RTATEMPQREFYITEIHNEAPHGAEESDLNFSGTKQEKETIQCHKITPRVIETSRVLLTD
EAAFKEKTKERRPDTVVELQLSLSHDRHKGTNVPAVSLLGAEKCTPSEAGPSVQEDGTSP
ITAVPLGEKEATVQWSSKTFQIASGKEVKVIQGAEAGNPSLPIVEVILDCSDREKEVSRS
LAEKGCVDSQVEGGQSEAPPSVVSFGISSEGTEQGEDDQHSERDHSRPHKHRARHARLRR
SESLSEKQVKEAKSKCKSIALLLTAAPNPNSKGVLMFKKRRQRARKYTLVSYGTGELERE
ENEGEEGDKENTFEVTLFGTSESEIDEDFFSDIDHEGQIVTFDWDTGLLEIEKKLKGGDE
MQMLPESKGKGALMFAKRRQRMDEITAEQEEVKSHGMHAEEQREANPKDSFRQVSSSSYQ
AKEEETSKMQSCVSKSYIEVSRSHGKMVQQNGIGGASETNISFQSSDAHKSTPLNRTAKP
FPGIPNRAAAPFSPTRNVTSPLSDLPAPPFYSSISPPPQAAYRAVSSPVASRAQPAIWSP
TEQIASRDERIAVPAKRTGILQEAKKRSTAKPMFTFKEPPKVSPNPALLSLVQNTEGKRG
TGTGFESGPEEDYLSLGAEACNFMQIQASKQKTPPPVAPKPSVKVSPTAATPISPVWSPP
AMASTQPPAFPTPNSPQAAVPAPIKVRQPAPHLLPPSTLNIAGPFKGPQAAVSNQNYTPK
TTPTTPIGNVAFAGGIGPAFEMPPAFSGKGAQLFAKRQSRMEKYVVDSETVQAHMARASS
PTPSLPASWKYSSNVRAPPPVAYNPIQSPSYPLAATKPQSKSPAVTKSTKRKPKKVLSAL
DVMKHQPYQLNASLFTFQPPSATKESLATKQSTKFDSVSASKHALPSRPLSAGSSANVQA
SSVYSVPAYSSQPWFQSNASTPINESYEPSGYPSFSKQESITSSLFTAPRPKFSAKKVGV
TAQERGRGCSLSLPVRPSSLTYRAISPASPLMSQPGLGYFSKPAAAANKPGKRLTPWEAA
AKSPLGLVDDAFGPQNIQESIVANVVSAARRKTLPEPPDDWKQRVSCVPPSPGVHASLAS
FGRRQSGITSPPKSSMSAPSSTFQCGSRLQYAYYGQRSRTDPDMMSMDSRSDYCLSMANS
NYNPHPRGWRRQT
NT seq
3822 nt
NT seq
+upstream
nt +downstream
nt
atgggcacaggggattatatctgcatttccatgagtggaggggcaccttggggctttaga
ctgcaaggtggcaaggagcaaaagcagcctttgcaaatcgctaaggttcgcagcaagagc
aaagcatccaaggctgggctgtgtgagggggatgaggtggtgtctatcaatggcaagtcc
tgtgcagacttaacctattctgaagttatcactcttatggaaggtctgactgatgccctc
cagctgcttatcaagagatcatccaatggactacacgaaagcttgagtccggaaacagaa
accagaagccatgataaaataaaaaatgaggagtatagggagagtaccacactgcaaatc
agaacagccacggaaatgccccagagggaattctacatcacagagatacacaatgaagct
ccccatggagcagaggaaagtgacttaaacttttctgggacaaaacaagaaaaggagaca
atacaatgccacaaaattactcctagagtgatagaaacctctagagtactcttgacagat
gaggctgctttcaaagagaagacaaaagaaagaaggccagacactgtggttgagctgcag
ttgtccctctcacatgacagacacaagggcaccaatgttcctgctgttagtctcctggga
gctgaaaaatgtaccccttcagaagctggacccagtgtgcaagaagatgggactagtccg
ataactgcagtccccctgggtgaaaaagaggccactgtccagtggtcaagcaaaacattc
cagattgctagtggcaaagaggtcaaggtgatccaaggagcagaggcaggcaatccatct
ctccccatagtggaagtgatcctagattgctctgacagggagaaggaagtgtccaggtct
ctagctgaaaaggggtgtgttgattctcaagtggaaggagggcagtcagaagcacctcct
tctgtagtctcctttggaatctcatcagaaggcacagagcagggagaagacgaccagcac
tcagaaagagatcacagcagacctcacaagcacagggcaaggcacgcaaggctccggcgg
agcgagagtctgtcagagaagcaggtgaaagaagccaaatctaaatgtaaaagcattgcc
ctgctgctgacggcagctcccaatcccaattccaagggggtgttgatgtttaagaagcgt
cgccaaagagcaaggaaatacactttagtcagctacggcaccggggaactagaacgtgaa
gaaaacgagggtgaagaaggtgacaaagaaaacacttttgaggtaactttatttggaaca
agtgagtcagaaatagatgaagatttcttctctgacattgaccacgaaggccagattgtg
acatttgattgggacactggtctgcttgagattgaaaagaaactaaaaggtggagacgag
atgcagatgctgccagaaagcaagggcaagggggccctcatgtttgccaagagacggcag
agaatggatgagatcacagctgagcaagaagaggtgaagtcacacggaatgcatgcagag
gaacaaagagaagccaacccaaaagatagcttcagacaagtgagctcctcgtcctatcag
gcaaaagaggaagaaacgtcaaaaatgcagagctgtgtgagcaaaagctacatagaagtg
agccgcagtcatggcaaaatggtacaacaaaatggcattgggggagcatcagagacaaac
atctcctttcagtcttctgatgcccataagtcaacacctttaaacagaacagctaaacct
tttcctggtataccgaatcgagcagcagcaccattttcaccaacgagaaatgtgactagc
cctctctcagatttaccagcaccaccgttctattcctcaattagcccaccgcctcaagcc
gcatatagagcggtatctagtccagtggccagcagagctcagccagctatttggtcacca
acagagcagatagcatccagagatgaaagaattgcagtgccggccaaaagaactgggata
ctacaagaagcaaagaaaagaagcactgcaaagcctatgtttactttcaaagaacctcca
aaagtgagtcctaaccctgccctattgtcccttgtacagaatacagaaggcaaacgaggt
actggaactggctttgaatcaggacctgaagaagactaccttagtttgggagcagaggct
tgtaatttcatgcagatccaagcatcaaaacaaaagacccctcctcctgttgctccaaag
ccctcagtcaaagtctctcctactgctgccactcccatttcaccagtctggtcacctcca
gctatggcttctacccagcctcctgctttcccaactccaaactcaccccaagctgcagtt
cctgcaccaatcaaagtaagacagcctgctcctcatctcttacctccaagtacacttaac
atagctggtccttttaaagggcctcaagcagcagtatcaaatcaaaattatacacccaaa
acaacacctaccacaccaataggaaatgttgcatttgctggaggaatagggccagccttt
gagatgccaccagcttttagtggaaaaggagcacagttatttgccaaaaggcaatctcga
atggagaagtatgtggtagactcagaaactgtgcaggcacacatggcacgggcctcatct
ccaactccatctttaccagcttcttggaagtattcatctaatgttcgagcacctccaccc
gttgcttacaatcccatccagtccccctcttatcctcttgctgctactaaaccccaatct
aaatcacctgcagttaccaaaagtaccaaaagaaaacctaagaaagttctcagtgctttg
gatgttatgaagcatcagccatatcaacttaatgcatctttatttacttttcaacctcct
tctgctactaaggaaagcctagctactaagcagtctacaaagttcgactcagtatctgcc
tcaaaacatgctctgccttcaagaccactcagtgctggttcttctgctaatgtccaagca
tcttcagtgtactccgtaccagcctacagttcacaaccgtggttccagtcgaatgcatcc
actccaataaatgagtcctacgagcctagtggttacccctcattttctaagcaagaatca
atcacatcctctttgtttactgctccaaggccaaagttttcagcaaagaaagttggagtc
acagcccaggaaagaggcagaggctgctcattatcacttcctgtgaggccttcttcactc
acctatcgagccatatcccctgcttcacctctgatgtcccaacctggccttggttacttc
agcaaaccagcagcagcagccaacaagcctggcaagagattgactccctgggaagcagca
gccaagtcccctcttggcctagtggatgatgcttttggcccccaaaacattcaagaatcc
attgttgctaatgtagtatcagctgctcgcagaaaaacactccctgagccaccggatgat
tggaaacaaagggtttcctgtgtgcctccatcgccaggtgttcatgctagccttgcatca
tttggaaggaggcagtctggtatcacatccccaccaaagagcagtatgtcagcccccagc
tccacttttcagtgtggctctcggcttcaatatgcatattatggtcagcgatcccgaaca
gatcctgacatgatgtccatggattccagatccgactactgcctgtcaatggccaactca
aactacaacccacatccaaggggatggaggcgtcaaacatga
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