Trachemys scripta elegans (red-eared slider): 117878699
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Entry
117878699 CDS
T07347
Symbol
ABCA1
Name
(RefSeq) phospholipid-transporting ATPase ABCA1 isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst02010
ABC transporters
tst04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117878699 (ABCA1)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117878699 (ABCA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tst02000
]
117878699 (ABCA1)
Transporters [BR:
tst02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117878699 (ABCA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
Motif
Other DBs
NCBI-GeneID:
117878699
NCBI-ProteinID:
XP_034628944
LinkDB
All DBs
Position
6:complement(125963422..126011819)
Genome browser
AA seq
2040 aa
AA seq
DB search
MPKEKLHAAEQAFRANIDLLKPIMKGIASNSSLHDLSGAMESLVESLGKLVKELAGMKSW
SDMRQEVMFLTNVNSTSSSTQIYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGGNS
TEEDAANFYDNSTTPYCNELLKNLESSPLSRIIWRALKPLLIGKILYTPDTPVTRQVMTE
VNRTFQELGVFRDLGGMWEEISPKIWTFMESSQEMDLIRTLLKSKSLWDTHLSSSTWTVQ
DVALFLAKSSENIQPVNGSTYTWMDAFNETDQAVQTISRFMECVNLDKLEPVATEVRLIN
RSMELLEERKFWAGIVFPEITPNSVELPPHIKYKIRMDIDNVERTNKIKDGYWDPGPRAD
PFEDMRYVWGGFVYLQDVVEQAIIRALTGTEKKTGVYVQQMPYPCYVDDIFLRVMGRSMP
LFMTLAWIYSVAVIIKGIVYEKEARLKETMRIMGLDNGILWFSWFISSLIPLLMSAGLLV
LILKMGNLLPYSDPSVVFVFLSVFAVVTILQCFLISTMFSRANLATACGGIIYFTLYLPY
VLCVAWQDYVSLSLKMFASLLSPVAFGFGCEYFALFEEQGVGVQWDNLFESPLEEDGFNL
TTSAFMMLFDTFLYGVMTWYIESVFPGQYGIPRPWYFPFTKSYWFGEESEERRHARSDHK
GPAENCMEEEPTHLSLGVSIQNLVKIYRDGKKVAVDGLTLNFFEGQITSFLGHNGAGKTT
TMSILTGLFPPTSGTAFILGKDIRSELSTIRQNLGVCPQHNVLFDLLTVEEHIWFYARLK
GLSEKKVKEEMQQMVLDVGLPHKLKARTSKLSGGMQRKLSVALAFVGGSKVVILDEPTAG
VDPYSRRGIWELLLKYRQGRTIILSTHHMDEADILGDRIAIISNGKLCCVGSSLFLKNQL
GTGYYLTLVKKDVDSSLSSCRNSSSTVSYLKKDDSVSQSSSDAGLGSDHESDTLTVDVSV
ISNLIMKHVPEARLVEEIGHELTYVLPYEAAREGAFVELFHEIDDRLSDLGISSYGISET
TLEEIFLKVAEDNGVDAETSDGTLPARRNRRVFGDRQSCLHPFTADDAFDPNDSDIDPAE
SRETDLLSGMDGKGSYQMKGWKLIQQQFVALLWKRLLIAKRSRKGFFAQIVLPAVFVCIA
LMFSLIVPPFGKYPSLELQPWMYEEQYTFISNDAPDDAGTEKLVNTLLNEPGFGTRCMEG
HSIPDTPCLVREDKWTTASVPDTVLDIFLNGNWTMENPSPACECSNEKIKKMLPVCPPGA
GGLPPPQREQNTGDILQNLTGRNISDYLVKTYAQIIGKSLRNKIWVNEFRYGGFSVGASS
SLLLPPSDEVSDAIKQVKKILEVAKGSSGDQFLHSLGSFMKGMDTKNNVKVWFNNKGWHA
IGSFLNVINNAILRANLQDGENPSTYGITAFNHPLNLTKQQLSEVALMTTSVDVLVSICV
IFAMSFVPASFVVFLIQERVSKAKHLQFISGVKPVIYWLANFVWDMCNYVVPATLVIIIF
ICFQQKSYVSSSNLPALALLLLLYGWSITPLMYPASFVFKIPSTAYVVLTSVNLFIGING
SVATFVLELFTNNKLNNINEILKSVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFV
SPLSWDLVGRNLFAMAVEGVVFFLITVLIQYRFFIKPRPVSAKLPPVNDEDEDVTRERQR
IISGGGQSDILEIKELTKIYRMKRKPAVDRICVGIPPGECFGLLGVNGAGKSSTFKMLTG
DTDVTGGEAYLKGNSILSNIQGVHQNMGYCPQFDAINELLTGREHLEFFALLRGVPEKEV
CQVGEWAIRKLGLVKYGEKYAGNYSGGNRRKLSTAIALIGSPPVVFLDEPTTGMDPKARR
FLWNCALSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTI
VVRIAGANPNLKPVQEFFGLAFPGSVLKEKHRNMLQYQLPSSPSSLARIFSILSQNKKRL
HIEDYSVSQTTLDQVFVNFAKDQSDDDHTKDMSLHKNQTVVDIAILTSFLQDEKVKESCV
NT seq
6123 nt
NT seq
+upstream
nt +downstream
nt
atgcctaaggaaaaactccacgcagcagagcaagcctttcgtgctaatatagaccttttg
aagcctataatgaaaggaatcgcctccaattcctccttacacgatctgtcaggagccatg
gagagcttggtggagagtcttgggaagctggttaaagagctggcgggcatgaagagctgg
agtgacatgaggcaggaggtgatgtttctgaccaatgtgaactccacaagctcctctacc
cagatctaccaggcagtgtcgcggatcgtgtgtggccacccggaggggggagggttaaaa
atcaaatctctcaactggtacgaggacaacaactacaaagccctgtttggaggcaacagc
acggaggaggatgcagctaatttctatgataattctacaacaccctattgcaatgagctg
ctgaagaatcttgaatccagtccgctttcccgaattatttggagggctctgaagcctttg
cttattgggaagatcctgtacactcctgacaccccggtcacgaggcaggtcatgactgag
gtgaacaggactttccaggagctgggcgtgttccgggacctaggagggatgtgggaggag
atcagcccgaagatttggacgttcatggaaagcagccaggaaatggatctgatccggaca
ctgctgaaaagcaaaagcctctgggacactcacttgagcagctcaacgtggacggttcaa
gatgttgccctgttcttggcaaagtcctcagagaatattcagccagtgaatggctccacg
tacacctggatggatgccttcaatgagactgaccaggccgtccaaaccatctcccgcttc
atggagtgtgtcaacctggacaagctggagcccgtggccacagaagtgcggctcataaac
aggtccatggagctcctggaggagaggaagttctgggctggcattgtcttccctgaaatc
accccaaacagtgtagagctgcctcctcacatcaagtacaagatacggatggacatagac
aatgtggaaaggacaaacaagattaaggatgggtactgggaccccggtcctcgtgctgac
ccctttgaagacatgcggtatgtctggggcggctttgtgtacttgcaggatgttgtggag
caggcgatcatcagggcgctgacgggcacagagaagaagactggtgtctacgtgcagcag
atgccctacccctgttatgtggatgatatattcctgcgtgtcatgggccgttccatgccc
ctcttcatgactctggcttggatctactcggtggctgtaataatcaaggggattgtgtac
gagaaggaagcccggctgaaggagaccatgagaatcatgggcctggacaatggtatcctc
tggttcagctggttcatcagcagcctcatccccctcctcatgagcgctgggcttctggtg
ctgatcctgaagatgggaaacctgctgccctatagcgaccccagcgtggtgtttgtcttc
ctctccgtctttgccgtggtgaccatcttgcagtgcttcctcatcagcaccatgttctcc
agggccaacctggcaacagcctgtggtgggatcatctatttcaccctctacctgccctac
gtgctgtgcgtcgcctggcaggactacgtgagcctctcgctgaaaatgttcgcgagcctg
ctgtccccggtcgcctttgggtttggctgcgagtactttgcattgtttgaggagcagggg
gttggcgtgcagtgggacaacctctttgaaagcccccttgaagaagatggcttcaacctc
accacatctgccttcatgatgttgtttgatacgttcctctatggggtcatgacctggtac
attgagtctgtcttcccaggccagtatggaattcccaggccttggtacttcccctttaca
aagtcctattggttcggtgaggaatctgaggagaggcggcacgctcgttctgatcacaaa
gggccagcggaaaactgcatggaggaggaacccactcatcttagcctgggggtctccatt
cagaacctggtgaagatttatcgtgatggcaagaaggttgccgtggatgggctcacactg
aatttctttgaagggcagatcacatcctttctgggacacaatggagctgggaaaaccaca
accatgtccattttaactggcttatttcctccgacctcgggcacggccttcatcctgggc
aaagatatccgctccgagctcagcaccatcaggcagaacttgggtgtctgcccccagcac
aatgtcctctttgacttgctgactgtagaagagcacatctggttctacgctcgtctgaaa
gggctgtcagaaaaaaaggtgaaagaagagatgcagcagatggtgctggatgtcggcctg
cctcacaaactcaaagctagaaccagcaaactctctggtggcatgcagagaaagctgtcg
gtggccttggcctttgtgggtggatcaaaggtggtcattttggacgagccaacagctggg
gtggatccttattctcgccgagggatatgggaactgcttctgaagtatcgccaaggccgc
accatcattctgtccacacaccacatggatgaggcagacatcctaggggacaggatcgcc
atcatttctaacggcaaactgtgctgcgttggctcttccctgttcctgaagaaccagctg
ggaacaggctattacctgaccctggtcaagaaggatgtggactcttctctgagctcctgc
agaaacagcagcagtacggtgtcgtacctgaaaaaggacgacagtgtctcccagagcagc
tcggatgctgggcttggcagcgaccatgaaagtgacaccttgacagtagacgtctctgtt
atctccaacctcattatgaagcacgttcctgaggccaggctggtagaggagattggccat
gagttaacctacgtcttgccgtatgaagctgctagagagggagcttttgtggagctgttc
catgagatcgacgaccgtctctctgacctgggcatttcaagttacggcatctcggagact
accctggaggaaatctttctcaaagtggctgaagataatggggtggatgcagagacctca
gatggcacattacctgcaagaaggaacaggcgtgtctttggagacagacagagctgtctt
catccattcacagcagatgatgctttcgaccctaatgattcagacatagatccagcagaa
tccagagagacagacctgctcagtgggatggatggcaaaggctcctaccagatgaagggc
tggaagctcatccagcagcagttcgtagctctgctgtggaagagactgctcattgccaag
cgcagcaggaagggtttcttcgcccagatcgtactgcccgccgtgtttgtgtgcattgct
ctcatgttcagcctgatcgtacctcccttcgggaaataccccagcctggagctgcagccc
tggatgtatgaggagcagtatacctttatcagcaatgatgcgccagacgatgcaggcact
gagaagcttgtgaacactcttctcaatgaacccggctttgggacccgctgtatggaagga
cactccattccggacactccttgcctggtcagagaggataaatggaccaccgcctctgtc
cccgacacggtcctggacatcttcctgaacggcaactggaccatggagaacccctccccg
gcctgcgaatgcagcaatgagaagatcaagaaaatgctccctgtgtgccctcctggtgca
ggggggctgccacctccacagagagaacagaacactggcgacatcctgcagaacctgacg
ggccggaacatatcggactatctggtgaagacctacgcacagatcattgggaaaagttta
aggaacaagatctgggtgaatgagttccgctatggtgggttttcagtgggcgccagcagt
tccctcctgcttcctcccagcgatgaagtcagtgatgccatcaagcaagtgaagaaaatc
ttggaggtagccaaggggagttctggagatcagtttcttcacagcttgggaagcttcatg
aaagggatggacacaaaaaacaacgtgaaggtttggttcaataacaaaggctggcacgcc
attggctccttcctgaatgtgatcaacaatgccatcctccgggccaaccttcaggacggc
gagaaccccagcacctacgggatcaccgcgttcaaccacccgctcaacctcaccaagcag
cagctctccgaggtcgccctgatgaccacgtcggtggacgttttagtctccatctgtgtg
atcttcgccatgtccttcgtccccgccagctttgtggttttcttgatccaggagcgagtc
agcaaggccaagcacctgcagttcatcagtggggtgaagccggtgatctactggctggct
aacttcgtctgggacatgtgcaactacgtagttccagccaccttggtcatcatcatcttc
atctgcttccaacagaagtcctacgtgtcctcttccaacctgcccgcactggcccttctg
ctcctgctctatgggtggtctataacaccactcatgtacccagcttcctttgtgttcaag
atccccagcacagcctacgtggtgctgaccagcgtgaatctcttcattggcataaatggc
agtgtggccactttcgtcctcgagctcttcaccaacaacaagctgaacaatatcaatgaa
atcctgaagtctgtgttcctcatcttcccccacttctgcctggggcggggactgatcgac
atggtgaaaaatcaggccatggccgacgctttggaaaggtttggtgagaaccgttttgtg
tcccctctgtcctgggatctggtgggacggaacctctttgccatggctgtggaaggggta
gtcttcttccttatcacagtgctcatccagtacaggttcttcatcaaaccgaggcctgtc
agtgccaagttgcctcctgtgaatgatgaagatgaggatgtgaccagggagaggcagagg
ataattagtggcggcggacagagtgacatccttgaaatcaaagagctgaccaagatttat
agaatgaagagaaaaccagctgttgaccggatctgtgttggaatccctcctggggagtgc
tttggcctcctgggagtgaatggcgctggcaagtcgtcaactttcaagatgctaactgga
gatacagatgtgacgggaggagaagcttatctgaagggaaacagtatcttgtctaacatc
caaggagtccatcagaacatgggctattgccctcagtttgatgctattaacgagctgctg
acggggagagaacatctggagttctttgcacttttacggggtgttcctgagaaagaagtc
tgccaggttggcgaatgggcaattcgtaaactgggccttgtgaaatatggagaaaaatat
gctgggaactacagtggagggaacagacgcaagctctccactgctattgccctgattggg
agccctccagtggtgttcctggatgagccaaccacgggaatggatcccaaggcacgccgt
ttcttatggaactgtgctctgagcgtcatcaaggaggggagatcagtggtgcttacatct
cacagcatggaagaatgcgaagccctgtgcactcgaatggcaataatggtcaacgggcgg
ttcaggtgtcttggcagcgtccagcatttgaagaacaggtttggagatggctatacaata
gtagtgcgaatagcgggggcaaaccctaacctgaagcccgttcaggaattcttcgggctt
gcctttcctggcagcgtcctgaaggagaagcatcggaacatgcttcagtaccagctccca
tcctcgccatcctctctggctaggatatttagcatcctctcccagaacaaaaaaagactc
cacatagaagactactccgtttctcagactacacttgaccaagtatttgtaaactttgcc
aaggaccaaagtgatgatgaccacacaaaggacatgtcattgcacaaaaaccagactgtt
gtggacattgcaatccttacttcttttctgcaagatgagaaggtgaaagaaagttgcgtg
tga
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integrated database retrieval system
