Trachemys scripta elegans (red-eared slider): 117878918
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Entry
117878918 CDS
T07347
Symbol
CHD1
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117878918 (CHD1)
03036 Chromosome and associated proteins [BR:
tst03036
]
117878918 (CHD1)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
117878918 (CHD1)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
117878918 (CHD1)
SLIK complex
117878918 (CHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_Hrp3
CDH1_2_SANT_HL1
Chromo
CHD1-like_C
Helicase_C
Motif
Other DBs
NCBI-GeneID:
117878918
NCBI-ProteinID:
XP_034629543
LinkDB
All DBs
Position
6:complement(59121095..59199859)
Genome browser
AA seq
1807 aa
AA seq
DB search
MNGHSDEESIRNSSGESSQSDDDSGSASGSGSGSSSGSSSDGSSSQSGSSDSDSGSESGS
QSESESDTSREKKQVQAKPPKVGGAEFWKSNPSILAVQRSAMLRKQQQQKAASSNSGSEE
DSSSSEDTLDDSSSETKRKKHKDEDWQMSGSGSVSGTGSDSESEEDREKSSCEESESDYE
PKNKVKSRKPPSRIKPKSGKKSAGQKKRQLDSSDEDEDDDDDYDKRGSRRQATVNISYKE
AEETKTDSDDLLEVCGEDVPQPEEDEFETIEKFMDSRVGRKGATGATTTIYAVEADGDPN
AGFDKSKEPGETQYLIKWKGWSHIHNTWETEETLKQQNVKGMKKLDNYKKKDQETKRWLK
NASPEDVEYYNCQQELTDDLHKQYQIVERIIAHSNQKSAAGYPDYYCKWQGLPYSECSWE
DGALIAKKFQSCIDEYFSRNQSKTTPFKDCKVLKQRPRFVALKKQPSYIGGHEGLELRDY
QLNGLNWLAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTLTS
WQREIQTWAPQMNAVVYLGDINSRNMIRTHEWMHLQTKRLKFNILLTTYEILLKDKSFLG
GLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITGTPLQNSLKELWSLLHFIMPEK
FSSWEDFEEEHGKGREFGYASLHRELEPFLLRRVKKDVEKSLPAKVEQILRMEMSALQKQ
YYKWILTRNYKALSKGSKGSTSGFLNIMMELKKCCNHCYLIKPPDDNEFYNKQEALQHLI
RSSGKLILLDKLLIRLRERGNRVLIFSQMVRMLDILAEYLKYRQFPFQRLDGSIKGELRK
QALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIGQK
KQVNIYRLVTKGSVEEEILERAKKKMVLDHLVIQRMDTTGKTVLHTGATPSSSTPFNKEE
LSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENEPGPLTVGDELLSQFKVANF
SNMDEDDIGLEPERNSRNWEEIIPELQRRRLEEEERQKELEEIYMLPRMRNCAKQISFNG
SEGRRSRNRRYSGSDSDSISERKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKFGGP
LERLDAIARDAELVDKSETDLRRLGELVHNGCIKALKDNSSGQERAGGRLGKVKGPTFRI
SGVQVNAKLVISHEEELAPLHKSIPSDPEERKRYAIPCHTKAAHFDIDWGKEDDSNLLIG
IYEYGYGSWEMIKMDPDLSLTHKILPDDPDKKPQAKQLQTRADYLIKLLNKDLARKEAQR
LSGAGNSKRRKTRAKKNKVVKLAKVKEEIKSDSSPLLSEKSDEEEEEDNKDEIASVKHSN
KKIKAEKENDEKSEPDIGIKKEVEEKRETKEKENKRDLKREKKEKEDKKELKEKDMKEKR
ESKVKESTQKEKEAKEEKINEVKSDNRDKTKKATLADTPVHITAISEPVPISEESEELDQ
KTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDHITECLKEYTNPELI
KQWRKNLWIFVSKFTEFDARKLHKLYKHAIKKRQESQQHNDQNISSNVNTHVIRNPDVER
LKENTNHDDSSRDSYSSDRHLSQYHDHHKDRHQGDAYKKSDSRKRPYSAFSNGKDHRDWD
HYKQDSRYYSDSKHRKLDDHRSRDHRSSLEGNLKDSRSHSDHRSHSDHRIHSDHRSSSEY
SHHKSSRDYRYHSDWQMDHRASSSGPRSPLDQRSPYGSRSPLGHRSPFEHSADHKSTPEH
TWSSRKT
NT seq
5424 nt
NT seq
+upstream
nt +downstream
nt
atgaatgggcacagtgatgaggaaagcataagaaacagtagtggagaatcaagccagtcg
gatgacgattctggttcagcatcaggttctggatctggttcaagttctggaagcagtagc
gatggaagtagcagccagtcaggtagcagcgactctgactctggttcagagtcaggcagt
cagtcagaatcagagtctgacacatctagagagaagaaacaagttcaagcaaaaccacca
aaagttggtggagctgagttttggaaatcaaatccaagtattttggctgtacagagatca
gccatgctcaggaagcagcagcagcagaaagcagcttcgtcaaacagtgggtcagaagag
gattcctctagtagcgaagacactttggatgactcatccagtgagaccaagaggaaaaaa
cataaagatgaagactggcaaatgtctggatcaggatctgtctctgggactggttcagat
tcagaatcagaggaggatagagagaaaagcagttgtgaagagagtgaatctgactacgag
ccaaaaaataaagtgaaaagcaggaaacctccaagcagaattaagccaaaaagtgggaaa
aagagtgcaggacagaaaaagaggcaacttgattcatccgatgaggatgaggatgatgat
gatgattatgataaaagaggctctcgtcgccaggcaacagtcaacattagttacaaagaa
gctgaagaaacaaagacagattcagatgacttgctggaagtctgtggagaggatgtcccg
caacctgaagaagatgaatttgaaactatagaaaagtttatggatagtcgtgttggacga
aaaggagccactggtgctacaaccaccatctatgcagttgaggcagatggtgatccaaat
gcagggtttgataaatcgaaggagccaggagaaacacagtatctgattaaatggaaaggc
tggtcccatatccataatacatgggaaactgaagaaaccttgaagcagcagaatgttaaa
ggaatgaagaaactggacaactacaagaaaaaggatcaggaaacaaaacgatggctgaaa
aatgcttctccagaagatgtggaatattataactgccagcaagaacttacagatgatctg
cataaacagtatcaaatagtggagagaataattgctcattcaaatcagaagtcagcagca
ggttatccagattattattgcaagtggcagggtctcccttactcagagtgcagctgggaa
gatggtgctctcattgccaaaaaatttcagtcatgcattgatgagtattttagcagaaat
caatccaagacaactccttttaaggactgcaaggttttaaaacagaggccgaggtttgtt
gcactgaagaagcaaccatcatatattggtgggcatgagggtttagagttaagagactat
cagttaaatggactaaactggctcgctcactcctggtgcaaagggaacagttgtattctt
gcagatgaaatgggtttgggtaaaacaatacaaactatttcttttctgaactacctgttt
catgaacatcagttgtatgggcctttcttgctggttgtgccactttctactttgacatct
tggcaaagagaaattcagacatgggctcctcagatgaatgctgtggtttatttaggagac
atcaatagcagaaacatgataagaactcatgaatggatgcatctacagaccaagcggtta
aaatttaatattcttttgacaacttatgaaattttgctaaaggataagtctttccttggt
ggtctaaattgggcatttataggagtggatgaagctcatcgtttaaaaaatgatgattcc
cttctatacaagacgctaatagactttaagtcgaaccatcgtcttcttatcactggaact
cctctgcaaaactccctcaaagagctctggtctttgctgcacttcatcatgccagaaaag
ttttcttcctgggaagattttgaggaggagcatggcaaagggagagaatttggctatgca
agtcttcacagagaacttgagccatttctgttacggagggttaagaaagacgtagaaaaa
tctctacctgccaaagttgaacagattttgagaatggagatgagtgcattgcagaagcaa
tattacaagtggattttaaccaggaattacaaagccctgagtaaaggttcaaagggcagt
acctcaggctttttgaacatcatgatggaactcaagaagtgttgtaaccattgctacctc
attaaaccaccagatgataatgaattctataataaacaagaggccttacagcatttaatc
cgtagcagtgggaaactaatccttcttgacaagctactgattcgcctaagggagcgtggc
aacagagttcttattttctctcagatggtgaggatgctggacatcctagcagaatatttg
aagtatcgtcagttcccctttcagagactagatggatcaataaaaggggaattgaggaag
caagcactggatcattttaacgcagaaggatcagaggatttctgctttttattgtctaca
agagctggagggctaggtataaacttggcatctgctgacaccgtagttatatttgattct
gactggaacccacagaatgatctgcaggcacaggctagagctcataggattggccaaaag
aaacaggttaatatttatcggctagtcacaaagggatcagtagaggaagaaattcttgaa
agagccaagaagaagatggtattagatcatttagtaattcagagaatggacactacaggg
aagactgtactccacacaggtgccactccttcaagctctactccttttaataaggaagag
ttgtcggcaattttgaagtttggtgctgaggaactttttaaggaacctgaaggagaagag
caggagccacaggaaatggatatagatgaaatcttgaagagggctgaaacacgggaaaat
gagccaggtccattaactgtaggagatgagttgctttcccagtttaaggtggccaatttt
tcaaatatggatgaagatgacattgggttggagcctgaacgaaattcaaggaactgggaa
gaaatcattccagagctccaaaggcgaagattagaagaggaggaaagacagaaggagctc
gaagaaatttatatgcttccaagaatgcgaaactgtgcaaaacagattagcttcaatgga
agtgaagggaggcgtagtaggaacagaagatactctggttctgatagtgattctatctct
gaaagaaaacgacccaaaaaacgaggaagaccacgcactattccacgagagaatattaaa
ggatttagtgatgcagagattaggcggtttatcaagagttacaagaaatttggtggccct
ctggaaaggctagatgctatagctagagatgctgaattagttgataaatctgagacagac
cttaggcgattgggggaactggtacacaatggatgcattaaggctttaaaggacaattcc
tctggacaagaaagagcagggggcagacttggaaaagttaaaggcccaacattccgaata
tcaggagtacaagtgaatgcaaagctagtcatctctcatgaggaagagttggcaccattg
cacaagtctattccttcagatccagaagaaaggaaacgatatgccattccatgccacacc
aaggcagctcattttgatatagattggggcaaagaggatgactccaatcttttaataggc
atctatgaatatgggtatggtagttgggaaatgataaaaatggatcctgacctcagcttg
acacacaagattctaccagatgatccggataagaaaccccaggccaagcagttgcagacc
cgcgcagactacctcattaaattactcaataaagatcttgcaaggaaggaagcacaaaga
ctttctggtgcaggaaactcaaagaggaggaaaacaagagctaagaagaataaagtggta
aaacttgcaaaagttaaagaggagataaaaagtgattcttctccactgctctcagaaaaa
tctgatgaagaggaagaggaggataacaaggatgagatcgcttcagtgaaacattcaaat
aaaaaaataaaagcagaaaaagaaaatgatgaaaaatctgagccagatattggtataaag
aaggaggttgaagaaaagagagaaacaaaagaaaaggaaaacaagagggatctgaaaagg
gagaaaaaagaaaaagaggataagaaagaattaaaggaaaaagatatgaaagaaaagaga
gaaagcaaagtaaaggagtccacacagaaagaaaaagaagcaaaggaagagaagataaat
gaagtcaaatctgacaacagagacaaaaccaagaaagctacattagcagatactccagtt
catattactgcaattagtgagcctgttcctatatctgaagaatctgaagaactggatcag
aagactttcagtgtatgcaaagaaagaatgaggcctgttaaagcagcgctgaaacagctg
gatagaccagaaaaaggtctttcagaaagggaacagctggagcatactagacagtgtcta
atcaaaattggggatcacatcactgaatgtctaaaagagtacacaaatcctgaacttatt
aaacagtggaggaaaaatttgtggatttttgtttcaaagtttacagaatttgacgccaga
aagctgcacaaactatataaacacgcaatcaaaaaacgccaggaatctcagcaacacaat
gaccagaatatcagcagcaatgtgaacacacacgtgattagaaatccagatgtggaaaga
ctgaaagagaatacaaaccatgatgacagtagcagggacagttattcctctgacagacat
ttgtcacaataccacgatcatcacaaagacagacatcagggagatgcttacaaaaaaagc
gattctagaaaaaggccctattctgccttcagtaatggaaaagatcacagggattgggat
cactacaaacaggacagcagatactacagtgatagtaaacatagaaagctggatgaccac
aggagtagagatcacaggtcaagcctggaaggaaatttaaaagacagtcggtctcattca
gaccaccgttcccattcagaccaccggatacactcagatcaccgatctagttcagagtac
agccatcataaatcttccagggactatagataccactcagactggcaaatggaccataga
gcttccagtagtggcccaaggtcaccactagatcagaggtctccttatggctcaaggtct
cccttaggacacagatctccatttgaacactcagcagatcacaaaagtacacctgaacat
acatggagtagccggaaaacataa
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integrated database retrieval system
