Trachemys scripta elegans (red-eared slider): 117878981
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Entry
117878981 CDS
T07347
Symbol
UTP20
Name
(RefSeq) small subunit processome component 20 homolog isoform X1
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tst03009
]
117878981 (UTP20)
Ribosome biogenesis [BR:
tst03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117878981 (UTP20)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
Motif
Other DBs
NCBI-GeneID:
117878981
NCBI-ProteinID:
XP_034629675
LinkDB
All DBs
Position
1:84680069..84763385
Genome browser
AA seq
2799 aa
AA seq
DB search
MKPKSSSHKSENTHRFLTFSERLGNVNIDIIHRIDRTGSYAEEVETYFYEGLQKWRELNL
TQHFVKFYKEVAGKCQSFNQLVYYQDAIVQSLKTHLQVKNSLAYQPLLDLVVQLARDLQT
DFYPHFQDFFLTITMLLDTQDTELLEWAFTALSYLYKYLWRLMVKDMANIYSLYSTLLAH
NKPHIRNFAAESFTFLMRKVSDKNALFNLMFLDLGEHPEKVEGVGQLLFEMCKGVRNMFH
SCAEKAIKFILLKLGPITEIEAKLPWIIVGEAFKHMVKSAAVYIYKEHFEVLFKCLEESV
LELQEKITKANCCESSEQIEKILQVYLILAEHANGSKIPQPEAVCKTLAKMLQTPDLSAP
CCKTLLKTISVLLLAENVFLPDAVTKETIEKAFGSGFERCLLLDFSQTVFSMNQFEQHFL
PCFLEYIEDCFSEEDVLARDEAMAILAKLILEKAEPPTVGSMAFEKYPLVFTEPPIGSNT
RQKMSKRNGERKQMPVLDHILSLIHLPENEDVIDLSHPWAALVVLPHVRPIDKEKILLPV
TSFIESLFLGIDRGRLRKGSLFVACQAVSTLLSLAESSEILHLLPVERVKNLVSTFPSDP
SVLLLADLYYTRLALCGCQDPLSHENLMDLFDKLKTNISSSTSKVRLLTIRILNHFEAQL
PTSTKDDGTGELQSVFAILLQAELVPASVNDYREKLLHLRKLRHDVVQSTIPDGPLHEVP
LQYLLGMLYINFSPLWDPVVELITSHANEMENKQFWKVYYEHLEKAAVYAERELQDELSE
EQAGTTDAESEKIQEGNVGSLYLEQLRFRTDCSERIDYANFRFLLWKALAKFPDRVEPRS
RELSPLLLRFISNEYYPADSLVAPIQDLRKKNRGAVEEEEKPTEEMHQATQEVEKEEVEG
MVEPVVEGLQKKKTRRAAAKQLIAHLQVFSKFLNPRALYLESKLNELYNQLLSHQDQNVQ
KVALDCIMTYKHPHLLPYKENLQRLLEDKSFKEEIVHFSISEENTIVKMQHRPDLVPVLM
RILYGRMRNKTGSRTQGKSAAGTRMSIVLRFLAGSLPEEIRMFLDLLFEPVKHFSVGPCQ
VAVLQTISELDLSKVLPLGRQHSLFNSLEVVLKNMGHLITQYLPEILQILLCMTATVSHI
LQQREKIQLRFINPLKNLRRLGIKLVAEFFSDFETYRFTVGEIDAIFEAVIWPQISRLAS
ESQYSPTLLLKLIHIWSKNPRYFPLLAKQRPGHPEYDTLLNVFALLSAKNLCEATAGVVM
DVADNLLNSPDFEPTDLVSSLTVADCVCIESDTDGMTEESPSLGARLILPHVPAVLQYLS
KTMLNIEKVKKKKFRAQVSKELNILSKISKFIQDKGQSSVLISLLLPFLHQSSIVQDTEI
DILVTVQNLLRHCLNPTSFLKPLAKLFSVIQNKLSRQTLCVVFQTLSDLEGELKYITEVV
KLNAFDQRHLDDINFDVRLSAFQAITSQIKAMQRVDINFLIPVMHNCFYTIQLGDMSLSD
SASLCLTSIIHRIAEISHTEDEYKEIIQHTLLLSLRKGLKSKTESIQQDYTSLLSCLIRT
FPKHPEFQDLVQLTDCHDPEMDFFENMKHIQIHRRARALKKLAKQLTEDKIILSSKSLQN
YIMPYATTTIFDEKMLKHENMITASVEVVGAVCRRLSWSAYMYHLKHFIHVLQTGQINQK
LAVSLLVTVLEAFHFDHETLEKQLETLQNEDAEAMDAEEAAENEAMELEQSEEEEAEGEK
RKNLLEDSEKQRDPALIQHEQAGTEESEETQKATKSISSLPRNKEELECLIEHIQGTVTG
SILPKLHRCLAAKVKRDEEHKLVKSKAVNDEEVVRVPLAFAMVKVMQSLPQEVMEANLPS
ILLKVCSLLRNRAQEIRDIARNTLTKIMEALGARYLQYVLREMQSTLVHGYQVHVLTFTV
HLLLKGLTSRLSPGELDTCLDIMIEIFNQELFGDVAEEKEVKGIVSKVMEARRSKSYDSY
EILGKYVGKDQVTKLILPLKEVLESTMSLKISRKVHETLRRIMSGLILNPEMSAESILVL
SHGLISENLPLLTEKAKTKAPAPPDPRLQPESCLLLPPVPARGGQKAPVSSKTNMHILVE
SGLRLLHMSLKRSKINSSDEHVLEMLDPFVQLLIDCLQSTDVKVITGALQSLVWILKFPL
PSIEKNTEQLTKQLFLLLKDFAKPGAAKGQNFHLVVNCFKCVTRLVRNTNSHITEKQLQV
LLGYAEEDIYDSSRQATAFGLLKAILSRKLIVPEIDAVMQKVAKFAITGQSEPVRVQCRQ
IYLKYILDYPLGDKLKPNLEFIFAQLNYDYETGRESALEMIAYLFEMFPQGLLHQYCGLF
FVPLCMMMVNDDSAKCKKMAAMANKSLLIKVNSANRDLMFSLVTTWFNSEKSSHKRLAAQ
ACGLFVEAEGVAFERQLGAVLPLIEKEIEPLKFEDITEETEEKAADRLLFSFLTLITKLI
KECNIILLTKHNEILSNIWRHVQSHLWYPHSWVWLTAAQIFGLLFASHKPEELVSKWNES
KAGKKKKTTLEPAATRFFTDELDKKMKELALAFCHQLQSKFLDQSLGEQVIKNLLFVARV
LYLLVPDSEEGEETKDHEMGGQEDASEDEGEKAASAQEEKEGEAEEKSSPATVLWVMKRL
SLMAKREAAYSPKNPVKRTCIFKFLGAVAVDLGKDRIKPYLPTIITPLHRELSSTYAEQD
PTLKNLSQEIIELLKKLVGLETFSLAFASVQKQASQKRAIRKKQRALQTVANPDIAARKK
LKKHKNKIEARKRKIEFLRPGYKAKKPRSHALKDLAMVE
NT seq
8400 nt
NT seq
+upstream
nt +downstream
nt
atgaagcccaaatcctcctcgcacaagtccgagaacacgcacaggtttctcaccttctct
gaacgcttaggcaatgttaatatcgatattattcatcggattgacaggactgggagctac
gctgaggaggttgaaacctatttttatgaaggactgcagaaatggagagaactgaacctc
acacagcactttgtgaaattctacaaagaagtggctggcaaatgccagtcattcaaccag
ttggtgtattatcaagatgccatagtgcagagcttgaagactcatctgcaagtcaaaaac
agtcttgcgtatcagccccttttggacctagtggtacagctggctcgagatctccagaca
gacttctaccctcactttcaagacttttttctgaccattaccatgttattggatacccaa
gacacagagctgctagaatgggcttttaccgctctttcctacctttacaaatacctgtgg
agactgatggtgaaggatatggccaatatatatagtttatacagtaccttgttggcacac
aacaaaccacacatcagaaactttgccgcagaaagcttcacctttctaatgaggaaggtt
tctgataaaaatgcactcttcaatttaatgtttcttgacctgggggagcacccagaaaaa
gtagaaggcgtgggacaattactctttgagatgtgcaagggggttcggaacatgtttcac
tcctgtgcagagaaggctataaagttcattctgctaaagctggggcccattaccgagatt
gaagctaaactcccatggattattgttggagaagctttcaaacatatggtaaaatcggct
gcagtgtatatctacaaggagcattttgaggttcttttcaaatgtttggaagaatcagtg
ttagaattgcaggagaaaataacgaaggccaactgttgcgaaagctcagaacagattgaa
aagatattgcaagtgtatttgattctagcagaacatgcaaatgggtccaaaatccctcaa
cctgaagcagtttgtaagacgttagcaaaaatgttacaaacacctgatctctcagcgcct
tgctgtaagaccctgcttaaaacgatttctgttttgctgcttgctgagaatgttttcctg
ccagatgctgtgaccaaggaaaccattgagaaggcatttggaagtgggtttgaaaggtgc
ctccttttggatttctcccaaacagtgttttcaatgaaccagtttgagcagcattttctt
ccgtgctttctagagtacattgaggactgcttctctgaagaagacgttctagctagggat
gaggccatggcaattttggctaaactcattctggagaaagcagaacctcccactgttggc
tcaatggcttttgaaaaatatccccttgtttttacagaaccaccgataggatccaataca
agacagaaaatgagtaagagaaatggagaaaggaaacaaatgccagtgttggatcatatt
ctgtctctaatccacttaccagaaaatgaagacgttattgatctttcacacccctgggct
gcccttgttgtacttccgcatgttagaccaatagacaaagaaaaaatcctgctaccagtt
acaagttttatagaatctctcttcctgggtattgacagaggaaggctccgcaaaggaagc
ttgtttgtggcctgtcaagctgtgagcacgctacttagtttagcagaatcttctgaaatt
ctccatttgttacctgtggaacgtgtgaagaacttggtgagcacctttccttcagaccca
tcggtcttgctactggctgatctctattatacgaggttggctttgtgtggttgccaggat
cctctttcccatgagaacttaatggatttgtttgataaactgaaaacaaatatttcctcc
agcacctccaaggtccgactcttgacaataaggattttaaatcattttgaggctcagctt
cctacatcaaccaaggatgatggaacaggagagcttcagtccgtgtttgccatattactt
caagctgaactcgtgccagccagtgtgaatgattatagagaaaaacttcttcatttaagg
aaactgaggcatgatgtggtgcagtctacaataccagatggacctttacatgaggtgcct
cttcagtatttactgggaatgctctatattaacttcagccctctctgggatcctgttgtt
gagctcataacgtctcatgcaaatgaaatggagaataaacagttttggaaagtctattat
gagcacttggagaaagcggctgtctatgctgagagggagctgcaagatgagcttagtgaa
gagcaggcaggcactacagatgctgagagtgagaagatccaagaaggaaatgtgggaagc
ctgtatctcgagcagctgaggtttagaacggattgcagtgagcggatagattacgcaaac
ttccggtttctgctttggaaggcgttggccaagtttccagacagagtggagcccaggtca
agggagctttccccacttctcttgagattcattagcaatgagtattacccagcagattct
ctggtggctccaatccaggatcttagaaagaaaaacagaggtgcagtagaagaggaagaa
aaacccactgaagagatgcaccaagctacccaggaggtggagaaagaggaggtggaggga
atggtagaaccagtggttgaagggttgcaaaaaaagaaaacgagaagagctgcagcaaag
cagctaatagcccatttgcaagttttctccaagtttttgaatccacgtgcgctgtatctg
gaatcaaagttaaatgagttgtacaatcagctgttgtcccatcaagaccagaatgtgcaa
aaagtagcccttgactgcatcatgacttacaagcatccgcacctactgccatacaaggag
aacttgcaaaggttactggaagataagagctttaaagaagaaatagttcatttcagcata
tccgaggagaacactatagttaaaatgcaacaccgaccagatcttgttcctgttcttatg
agaattctctatgggcggatgagaaacaaaactggaagcagaactcagggcaaatctgct
gcgggcactcgtatgtcaattgttctgagattccttgctggctcgctgcctgaagagatt
agaatgttcctggacctgctctttgaacctgtgaagcacttcagtgttggaccttgccag
gttgcagtactccaaacaatatcagaactggatttatctaaagtcctgcctctaggccgc
cagcacagtctgttcaacagccttgaggttgtactgaaaaacatgggccatctgatcact
cagtacttacctgagattttacagattttactttgtatgacagcaacagtatcccacatc
cttcaacaaagagagaagatccagctaaggtttattaacccactgaaaaatttgaggcgt
cttgggatcaaacttgtagctgagtttttttctgattttgagacctaccgctttacagtg
ggcgagattgatgccatttttgaggcagtgatatggccccagatcagcagactcgcttct
gagagccagtattctcctactctgttactcaaactcattcacatctggagcaagaatccc
aggtatttccctttgctggccaagcagagaccagggcacccagaatacgatacactgttg
aatgtctttgctctgctgtccgccaagaatctctgcgaggcaacagctggtgttgtgatg
gatgtggctgacaacctcctcaacagtcccgattttgaacccacagacctggtttccagc
ttgacagtggctgactgcgtttgtatagaatctgacaccgatggaatgacagaagagtct
cccagcttgggtgcacggttaattctgcctcacgttcctgcagtacttcagtatctcagc
aaaaccatgttaaatatagaaaaggtgaaaaagaaaaagtttagagcgcaagtcagcaaa
gagctcaacattctttccaagatcagcaagtttatacaggacaaaggtcagagttctgta
ctcatcagcctcctcctccctttccttcaccagagtagcattgtgcaggatacagagatt
gacatcctggtgacagtgcagaacttgctgcggcattgcttaaaccccacaagcttcctt
aagcctctggcaaaactgttttcggttatccagaacaaattatctcgacagacactctgt
gtggtttttcagactttatctgatctggaaggtgaattgaaatacattactgaggtagtt
aagttgaatgcctttgatcaacgacatctcgatgatatcaattttgatgttcgcttgtca
gcgttccaagcaatcacttctcagatcaaagcaatgcaaagagtggacatcaactttctt
attccagttatgcataactgtttctacaccatacagttaggggacatgtctttaagtgac
agtgccagcctgtgcttgaccagtattatccatcgaatagcagaaatcagccacacagaa
gatgaatacaaagaaataatccagcacactctcctgctgtctttgagaaaaggactgaag
agcaagactgagagcattcaacaagactatacttcgttactttcctgcttgattcgaact
tttccaaagcacccagagtttcaagacttggtccagctaactgactgtcatgatcctgag
atggatttctttgagaacatgaaacatattcagatccacagaagagctcgagccttaaag
aaattggcgaagcagctgactgaagacaaaatcatactgtcctccaaatctttgcagaac
tacatcatgccttatgcaactactactatttttgatgagaaaatgcttaaacatgaaaat
atgataactgcttcagttgaagttgtaggtgctgtttgcaggcgtctctcttggtcagca
tatatgtaccatttaaaacatttcatacatgttttgcaaactggacagatcaatcaaaaa
ctggctgtcagcttgttagtgactgtgctagaagcttttcattttgaccatgaaaccctt
gaaaagcaactcgagactcttcagaatgaagatgcagaggccatggatgctgaggaagca
gcagagaatgaagccatggaattggagcagagtgaggaggaggaggctgagggagagaaa
aggaagaacctgctggaggacagtgagaagcagagggatcctgcactgattcagcatgaa
caggcaggcaccgaagaatctgaggagacccagaaagccacaaaatccatttcttctctt
cccagaaataaggaggaactggagtgtctgattgaacacattcaaggaacagtaactggc
agcatcttgcccaaattacacaggtgtcttgccgcaaaggtgaaaagagatgaggaacac
aagcttgtgaaatccaaggctgtgaacgatgaagaggtggttcgggtgccgttggcgttt
gccatggtcaaggtgatgcagtctctcccacaagaggtcatggaagctaacctgccaagc
attcttctcaaagtctgctcgcttctgaggaaccgggcgcaggaaatccgggacatcgca
cggaacaccctgaccaaaataatggaggctttgggagcacggtacctgcagtacgtctta
agagagatgcagtcgactctcgtccatggctaccaggtccatgtgctgacgttcactgtg
cacctgttactgaaaggcctgaccagcaggcttagccctggcgagttggacacctgctta
gacattatgattgagattttcaatcaggagctgtttggggatgttgctgaggaaaaggaa
gtgaaggggatagtctccaaggtcatggaggctcgcagaagcaagagttacgattcttac
gaaattcttggcaagtacgtagggaaggaccaagtgacgaagctcattcttccgttgaaa
gaggttttagagagcaccatgagcctgaaaatatcccgcaaggtgcacgaaacattacgt
cgcatcatgtcagggttgatcctaaatccggaaatgagcgcggaatccattctcgtgctc
agccacggcctgatcagtgaaaatctgcccctgctaacggaaaaagccaaaacaaaagcc
ccagctcctccagatcctcgtctgcaaccagaaagctgcctgttactcccaccagtccca
gcgagaggcgggcagaaagcacctgttagcagcaagactaacatgcatatcttggttgaa
tcgggacttaggctactgcacatgagcctgaagagatccaaaataaattcctcagatgag
catgttttagaaatgttggatccttttgttcagctgcttatagactgtctgcaatccacg
gatgttaaggtgatcactggcgctctgcagtctttggtgtggattttaaagttccctttg
ccttctattgaaaagaatacagagcaactaaccaagcagcttttcctgctgctgaaggac
tttgccaagccaggagcagccaagggccagaacttccatttggtggtgaactgtttcaaa
tgcgtaactagacttgtgaggaacacaaacagtcacataacagagaaacagctccaagtg
ttgctaggatatgctgaagaagatatctatgattcctcgcgtcaagccactgccttcggc
cttttaaaggctattttatccagaaagctaattgttcctgaaatcgatgccgtcatgcag
aaggttgccaagtttgccatcacaggccagagtgagccagtgcgagtccagtgcaggcag
atttacctgaaatacattctcgactatccccttggtgacaagctgaaacccaatttggag
ttcatatttgctcagctcaattatgactatgagactggaagagagtctgcgttggagatg
attgcttacctctttgaaatgttccctcagggattacttcatcaatactgcgggctgttc
tttgtccctctctgtatgatgatggtaaatgatgactctgccaagtgcaagaaaatggca
gccatggcaaacaaatctctgctcattaaagtaaactctgcaaaccgagatctgatgttc
tcactagtcaccacgtggtttaacagcgagaagagctcacacaagcggctagccgcccag
gcctgtggtttgttcgttgaagccgagggagtggcgtttgaaagacaacttggagccgtt
ctcccactgatcgaaaaagaaattgaacctctgaaatttgaagatataacagaagagact
gaagaaaaggcagcagatagattgttgttcagttttcttactctgataacaaaattaatc
aaggaatgcaacattattctgttaaccaaacataatgagattttgagcaatatctggcgt
cacgttcagtcccatttgtggtacccgcacagctgggtgtggctgactgctgctcagatt
tttggcttgttgtttgcttctcacaagccagaggaacttgttagcaaatggaatgagagc
aaggcaggcaagaagaaaaagaccacgttggagccagcagcaaccaggttcttcacagat
gagctggacaaaaagatgaaggaacttgctttagcgttctgccaccagctgcagtccaag
ttcctggatcagtctctgggagagcaggttataaagaacttgttgtttgtggcccgagtt
ctctaccttctggtcccggattcagaggagggggaggagaccaaagatcatgaaatggga
ggtcaggaggatgcttctgaagacgaaggtgaaaaggcagcatctgctcaggaagagaag
gaaggtgaagcagaagagaaaagcagtccagccacagtgttgtgggtgatgaaaagactt
tctctgatggcaaagcgagaagcagcatattcccctaaaaaccccgtgaagagaacttgc
atctttaagttccttggagctgtagcagtggatcttgggaaagacaggatcaagccatac
cttccaacaatcatcacccctctgcacagagagctgagtagcacctatgcagaacaagat
ccaacactgaagaacctatcccaggaaatcatagaactgctcaagaaattagttgggctg
gagactttttcacttgcctttgcttctgtgcagaaacaggctagtcagaagagggctatc
aggaaaaaacagagagccctgcagactgtagcaaaccctgacattgctgccaggaagaag
ctgaagaaacacaagaataaaatagaagcaaggaagagaaaaatagaattcctgcgccct
ggctacaaggccaagaaaccaaggagccatgcactaaaagacttagcaatggtggaatga
DBGET
integrated database retrieval system
