Trachemys scripta elegans (red-eared slider): 117878996
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Entry
117878996 CDS
T07347
Symbol
MTREX
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117878996 (MTREX)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117878996 (MTREX)
03041 Spliceosome [BR:
tst03041
]
117878996 (MTREX)
03009 Ribosome biogenesis [BR:
tst03009
]
117878996 (MTREX)
03016 Transfer RNA biogenesis [BR:
tst03016
]
117878996 (MTREX)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117878996 (MTREX)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
117878996 (MTREX)
Spliceosome [BR:
tst03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117878996 (MTREX)
Complex C
U4/U6.U5 tri-SnRNP related factors
117878996 (MTREX)
Ribosome biogenesis [BR:
tst03009
]
Eukaryotic type
Pre-60S particles
Helicases
117878996 (MTREX)
Transfer RNA biogenesis [BR:
tst03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
117878996 (MTREX)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
117878996
NCBI-ProteinID:
XP_034629696
LinkDB
All DBs
Position
6:31547811..31632999
Genome browser
AA seq
1080 aa
AA seq
DB search
MGWAPTGFPARCSPARAARLPLPAQCRVGGGAGPWCARGAVGQAAAMADAFGDDLFSVFE
DDSAASGAKKGKAAAAEAASKAGKRSDGKSPAGSTNIPGKTKREAEVDSTDYAIFGKKSK
IEDVSEDINLADLMPKVKVQAVETVEGCTHEVALPANEDFIALKPRTGKAAKEYPFILDA
FQREAILCVDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSPIKALSNQKYREM
YEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDSER
GVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVIYTDYRPTPLQHYIFP
AGGDGLHLVVDENGDFREDNFNTAMQVLRDAGDLAKGDQKGRKGGTKGPSNVFKIVKMIM
ERNFQPVIIFSFSKKDCEAYALQMTKLDFNTDEEKKMVEEVFNNAIDCLSDEDKKLPQVE
HVLPLLKRGIGIHHGGLLPILKETIEILFSEGLIKALFATETFAMGINMPARTVLFTSAR
KFDGKDFRWISSGEYIQMSGRAGRRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSA
FHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAIPGVVEKVNKLEEQYNKIEIPNEES
VVIYYKIRQQLAKLGKEIEEYVHKPKYCLPFLQPGRLVKVKNEDDDFGWGVVVNFSKKSN
VKPNSGELDPLYVVEVLLHCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISSV
RLYIPKDLRPIDNRQSVLKSIQEVQKRFPDGVPLLDPIDDMGIKDQGLKKVIQKIEAFEH
RMYSHPLHNDSSLETVYKLCERKAQIAVDIRTAKRELKKARTVLQMDELKCRKRVLRRLG
FATSSDVIEMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMP
KLTEQLAGPLRQMQECAKRIAKVSAEAKLEIDEENYLNSFRPNLMDVVYTWANGATFAHI
CKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atgggctgggcgcctacgggatttcctgcccggtgcagcccggctcgtgccgcgcgcctt
ccccttccggcgcagtgcagggtcggcggaggagcaggtccgtggtgcgcgcggggcgct
gtgggacaggctgcagcgatggcggacgcctttggagacgatctgttcagcgtgttcgag
gacgattccgccgcctctggggccaagaagggcaaagcggccgcggccgaggctgccagc
aaggccgggaaacgctcagatggcaaatctccggcaggctctacgaacatcccagggaaa
accaaaagagaggcagaggttgatagcacagattatgctatttttggaaagaaatccaag
atagaggatgtttcagaagatattaatctggcagacctgatgccgaaagtaaaggtgcaa
gctgttgagactgttgaaggttgtacacatgaggttgcacttcctgcaaatgaagacttc
atagccctcaagccaagaactggaaaagctgcaaaggaatatccattcattcttgatgct
tttcaaagagaagccattctttgtgtggataacaatcagtctgttttagtgtcagctcat
acgtcagctggaaaaactgtctgtgcagagtatgcgattgccttggctttgagggagaaa
cagcgtgtgatatttaccagtcccattaaagctctgagtaaccagaagtatcgtgagatg
tatgaagaatttcaggatgttggtttgatgactggggatgtcaccattaatcctacagct
tcttgtcttgtaatgacaacagagattttgagaagtatgctctacagaggttctgaagtt
atgcgagaagttgcctgggttatatttgatgaaatccattatatgagagactcagaacgt
ggtgtggtttgggaggagaccattattttgctacctgacaatgttcactacgtgtttctt
tctgccactattccgaatgcccgccagtttgctgaatggatttgccatcttcataaacag
ccttgccacgtgatttacacagattatcgacctactcctctgcaacattatatcttccca
gcagggggggatggactccaccttgtggttgatgaaaatggtgatttcagagaagacaac
tttaacacagcgatgcaagtacttagagatgcaggtgacttagcaaaaggagaccagaag
ggcaggaaaggaggaacaaaaggaccatcaaatgtatttaagatagtgaagatgatcatg
gaaaggaatttccagcctgtaattatattcagtttcagtaaaaaagattgtgaagcctac
gcacttcagatgacaaaattagacttcaacacagatgaagaaaaaaagatggttgaagaa
gtatttaataatgcaattgactgtctttctgatgaagacaagaaacttcctcaggttgag
catgtgcttcctcttttgaagcgaggaattggcattcatcatggtggtttgcttcctatt
ttaaaggaaacaattgaaattcttttttctgaaggattgataaaggccttatttgcaact
gagacctttgctatgggaattaatatgccagccaggacagtgctgttcacaagtgcccgc
aaatttgatgggaaagatttcagatggatctcctcaggtgaatatattcagatgtctggt
cgtgcaggacgtcgaggtatggatgacagaggaatagtaattcttatggtagatgagaag
atgagcccaacaattggcaaacagcttcttaagggctcagctgatcctctaaacagtgct
tttcacttgacgtacaacatggtgttgaacttactccgagtagaggaaattaaccctgaa
tacatgttagaaaaatccttctaccagtttcaacactacagagctattccaggagtagta
gaaaaggtaaataaattggaagaacagtacaacaaaatagaaattccaaatgaggaaagc
gtggtcatctactataaaatccgacagcagcttgctaaactgggtaaagaaattgaagaa
tacgttcacaagccaaaatactgcttgccctttttacagccaggcaggctggtaaaggta
aaaaatgaagatgacgattttggttggggagtggttgttaacttctccaagaaatcaaat
gttaagcctaactctggtgagctggacccattatatgtggttgaagtcctattacactgc
agcaaagagagtttgaagaattctgctactgaggctgcaaagccagcaaagcctgatgag
aaaggagagatgcaggttgttccggttttggtgcatcttctctcagctatcagcagtgtc
cgactttacatacccaaagacctgaggcccatcgacaataggcaaagtgtgttaaaatct
atacaggaagtacagaagcggttccctgatggagtaccattattggaccccattgatgac
atgggcatcaaagaccaaggactgaaaaaagtcatccaaaaaatagaggcttttgaacat
aggatgtattcacatccacttcacaatgattccagtttggagactgtatataagctttgt
gaaagaaaagcacagattgcagtggatattagaacagcaaagcgggaactaaagaaagcc
agaactgtcttacaaatggatgagctcaagtgccgcaaacgtgtattgagaagattgggt
tttgccacgtcatctgatgtcatagagatgaaaggacgagttgcttgtgaaatcagcagt
gctgatgaactgctcctgacagaaatgatgtttaatgggctcttcaatgacttatctgca
gaacaagcaactgcattactaagctgctttgtatttcaagagaattccagcgaaatgccc
aaattgacagagcaattggcaggaccgcttcgccaaatgcaggaatgtgctaaaagaatt
gccaaagtttcagcagaagctaaattggaaatcgatgaggaaaattacctaaactccttc
agacccaacctgatggatgtagtatacacatgggcgaatggagctacttttgctcacatc
tgcaaaatgaccgatgtctttgaaggtagcataattcgttgtatgaggcggctagaagaa
ttgctccgacagatgtgtcaagcagcaaaggccattggaaacacagagctggaaaataag
tttgcggaaggaattaccaaaatcaagagagatattgtgtttgctgcaagcctctacctc
taa
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