Trachemys scripta elegans (red-eared slider): 117879269
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Entry
117879269 CDS
T07347
Symbol
CFAP54
Name
(RefSeq) cilia- and flagella-associated protein 54
KO
K25553
cilia- and flagella-associated protein 54
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
tst03037
]
117879269 (CFAP54)
Cilium and associated proteins [BR:
tst03037
]
Motile cilia and associated proteins
Sperm associated proteins
117879269 (CFAP54)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CFAP54_N
fn3
DUF7399
Motif
Other DBs
NCBI-GeneID:
117879269
NCBI-ProteinID:
XP_034630620
LinkDB
All DBs
Position
1:81731702..81928613
Genome browser
AA seq
3011 aa
AA seq
DB search
MMAEAGSQAPPPGPRLQPPPATFFGALEPGNPVIDSFESELRDFLGFIRRLQSVGAAEPR
GQEPHRRGANTLFNIWIKYKPRLPDWYYNEKLLKVGDLLIQIKEYKLALLQCYGRYLQQF
SSINLDEVIADVNQFKSMFFPNGFGDKSAALTFHALQGRNICIYQMVCISDRNLQNQESL
QMCFNILSSLRLIMQVALPQEHLCWLIYNGTIYIYTICRRLMSIGQSAKVLEYLLWASIC
MESSVPLLAVHYLTWRTTLYTAVCYCYYDNQASIHGEVFARRGLSKIDELKQLESMSCSP
QNSETKKVFREATIKMAVMVFKRAVYESRRKPKGFFRPKLRVNLKEAQNVSLEFCVNLFL
FDLFITYFYTCLQSLCIIAVSTAGRLYAVDLRQSFWWGGGSFASTQGSYCTESSGVINES
STLLQLILTGKNGVSGEAAMKFIKLAFSYEEWDVFDSTIGLIANFLQNQDDPIWKKAEME
LRLIIAMQPLVSTRRSKHGLSVQENIFKETTISRSSGRRTIALQEGSLKPGDPSDDLVTL
ATTVFSCVCTSKQTLQPDKEILVDIVMFLWQKCKVGVQRIQTSGSAYLKYIYKFKAYKWV
HILWIINEVIHSSNIVDANVVVLAEVTLRLTAILENIADCANKSAKTAGERSESVLPSQT
HICDIPEILKKSPAEQLHFAYENLEKAINGMNMSRLMTILPDGKSVLDTYCTKKNSNGQN
LNASSAYGNDKPAPGNNFVMDLHLELIQAQHRVAVKLLNMKQGVQMDGKNLKSTKSPGKD
VNCLHLFTESDIINKIKKNKLSKAIFLMQKAVLMFPKGSASSSQKHLLEEALALIQKVEA
EQNALCSSLKQAMTSKKNRIPPPPLLLSRSHCSMTFKPAPFSSDVQVSWYSILGCVAAGS
NLKVRLNNHHLPNAGEEIPADGKSLFEIKGLDPNEKYIFAVAAYSSDGKLIGDAIGETTK
PILAYPPLSATTARAYLTQIAYQTDNYTLAKKAFSPMWDYFVLAPSTPSADPAVISTSNN
LTISQNRLCLDAVSQTSPILLHLFLRSIFIINEINVKEGALFCDSICSKEILYNGQVARL
AECERMVAAIELSNWLNDANYALQSVVQCYGLLAPIIYHKIASVPVVQILIKCLTVLQEV
PSSTLQRKQTSCYESIQHMIACSSFYTAQVLRSWKEYELALIIINYGKKLLDSSQTSHGQ
SKFSSIEEMQIDTETEDESPYNKKKSQAAAVEKAAENLAALESNLLKLTRPGTGPEITGQ
EDPFFLYPIISCWTTKNAYREVMKFRKKPRFLEFFVQVLHKTLNEEKFQRILEWTGSVKD
FLRRRNNHFLGIKGTLAKEVSELSVSEDAKRHTTAVVEFQKPLEASTLKKPRKEVMSPFR
GRESLRQYFLRHPSLGKSPEAQRKQRDEIEKVAFHTLVVLLNPTVSNYLKRKRFHQVCLE
EMPWRSQMNIYLAITHFNLFKKRLEEQYNIGVCSLQHLNSYDVLDPEIFSLNNSGIIVVR
GGTDDNIGTLSHLLIKRKQSESSRKITDPDKSSEHSSKFSEADTPRSQMTNDTELSTTLS
AREHERPMSNAILLEHFTKTFLHLRRAVVLAHRGGHWTLLQNTCRELWNYSQEALSVAKH
SHSLQRLFPITRNFLISTIWLPFYLASDTILDMIIELQTSNSLKIFDPEGDFCVPSCVGG
IADEDGGSNLTFCCPLDDINVVDLRWICGLVLRTIELLYQMKKWEALVHIALHFNTITHE
RYAEQVTPLLVYAQRQLLERIQQFRGPDSPQPHFIKYQGDNANKLIENRIKLFFCYRRYL
QYDGCIFMFYRSAFKYWCQALDETLNIADVLNNWQELDGFSKNVTDDFTDESSKHFSEKC
IYQAGIWGCLHAAVLAAKIAQYILTSNVRLRTKCCIFSAILFKTLFKVSIPHPTADCDFA
QYEIHKLIPGIDLFSDRYRADVSTVVASLSFLIFELHCAKQNLIVLPLFTLYQYFVSEIC
RDPVKCIEGRILKIKVLTDLGFFAEAFSELCLLNHGEKIPWKVPAGYRLIGKMMSFQKFD
SSKPLLTNANLQVLEDVFNWSLPPAVVSMCDQQIMNKLTLAKMHLIICLSATINSIPEKV
MKTIYSVDNTSLKKPSRIMESSIKINAEVTRPQEQSSIIVQLVRCKDELNMAMLKGILLT
ETEERLNSLVANIQNEYDGKISHCSAVELETVIEAKLQLAVISQQRHQTAFSAALAFSAI
RLLQDANIFRKNVPHIQLNIQQTERRDSYVDSTQLPCNVIAQEHMNIRLWLRCRMALVTA
LTAQIRGIGDMKENDMTDCSSLINEVIIEAEAFSDIETQAEVMVQAVILDLQERRPVTGI
KLLLQDIINLLQEKPFISPMASLTLVKSMLLLADILTTQTDEDTEHHSSAIERLNLLILA
HKFTIKQIFTLGEPIEQCIEDPALTSPVIPLKNNYLPAINLLAKVKMRIAHALAQEVACT
SKRENPLQWLPALSHLETALDLCRTSATRELDLQAEILFQKGKVERQIIEAGNNKSPRAA
ETLLDAIKVSQRNDQNFGLIRKSYLEIALLYFHLATYREEASQTVKIEASKTKTTPKEHL
ASTERIPVATEVYRAQAWIAIRAATQVSEAMLASQLLIGKKSVKGHQVKATTQQNIPEFA
SMDLLASYKDFLSDGYEVLYKNLMASSIKNEEIIQSEKDQIESEGTEYNISKDSQWKQTI
TWVHLIRYHNYLIRHNMSPLFAVSKSTPGSFSMEDALFTSVFDTGIVLRLAEMHIFLKKH
LYIYSTCCLEDFPKQLQFLEKPGANLAAVPVKMSLEILGAPHKMSTVRIASTVSFCTDTD
IQLDNKATIAPNKELCIQWYIPSLEKSTKDMETMVLLLYAYNTKYVKIVSIKTFNSANVF
SGHLWIPLTRIISLHEKLSNVKQQIEILVQSSTSFPLQEQSERQKREPSTKSKINLAKVQ
LDEKIEEMLKQCLSEVKALLCVVPDLSSPLIEVPFDVTLQSIKNLEKMFDPANGCMIAGG
SLFNWVVSLLP
NT seq
9036 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggaggccgggtcccaggcgccgcctcccggccccaggctgcagcccccgccg
gctactttcttcggcgccctggagccggggaaccccgtgatcgacagcttcgagtcggag
ctgcgggacttcctgggcttcattcgccggctgcagagcgtgggggcggccgagccgcgg
gggcaggagccgcacagacgcggagcaaacactttgtttaatatttggatcaagtataag
cctcgactgccagattggtattacaatgaaaaacttctgaaagttggtgacctccttatt
cagatcaaagaatataagctggcacttttacagtgctatggacggtatcttcagcagttc
agttcaataaaccttgatgaggtaatagcagatgtgaatcagtttaagtccatgtttttt
ccaaatggctttggtgataaaagtgctgcacttacgttccatgctttgcaaggaaggaat
atttgcatttaccagatggtatgcatcagtgatagaaatctccagaatcaagaatctctg
cagatgtgtttcaatatcttgtcctccttacgactcattatgcaggtggctctacctcag
gagcatttgtgttggcttatctataatggtacaatttatatatacacaatatgcagacgt
ttgatgagcataggtcagtctgctaaggtgctggaatacctattgtgggccagcatatgt
atggaatcatcagtaccacttttagctgtacactatttgacatggagaaccaccctttac
actgcagtttgttattgttattatgacaaccaagccagcatccatggagaggtattcgct
cgccgtggtctgagtaaaattgatgaactaaagcaattggaaagcatgagttgttcacca
caaaattcagaaacaaaaaaagtttttagagaggccactataaagatggcagtaatggtt
ttcaagagagcagtatatgaatccagaagaaagcccaaaggattttttcgaccaaaatta
agggttaatctaaaggaagcacaaaatgtaagtttagaattttgtgtaaatctttttctt
tttgatctgtttattacttatttttatacttgcttgcagtcactttgcatcattgcagtc
tccactgctggaaggctttatgctgtggacctgcgtcagagtttttggtggggtggtggc
agctttgctagtacacaaggaagttattgtactgagtcttctggtgtaataaatgaatca
tcgacacttctgcagcttatattaacagggaaaaatggtgtttctggagaagctgctatg
aagtttataaagttagctttcagctatgaagagtgggatgtatttgattctactattgga
ctgattgctaattttcttcagaatcaagatgatccaatatggaagaaagcagaaatggaa
ctcaggcttatcattgcgatgcagccgctagtgtctacaagaagatctaaacacggcctc
tctgtccaggaaaatattttcaaggaaaccacaatatctcgcagttctggaagaagaaca
attgcacttcaagaaggatccctaaagcctggagacccttctgatgatcttgtcactttg
gcaaccacagtgttttcctgcgtatgtacatctaagcagactctccaaccagataaagaa
atacttgttgatattgtaatgtttctgtggcagaagtgcaaagtaggagttcagcggatc
caaacgagtggaagtgcctacttaaaatatatctacaaattcaaagcttacaaatgggtt
catatactttggataataaatgaagtaattcacagcagtaacatagtagatgctaatgtt
gtagtacttgcagaggtcacattacgcctgactgcgatattggagaacatagctgactgt
gcaaataaatctgcaaaaacagcaggagaaagaagtgaatcagtattaccttcgcaaact
catatctgtgacattcctgaaattctgaagaaaagccctgcagaacagttacattttgct
tatgaaaatcttgaaaaagcaattaatggaatgaacatgtctcgcttaatgaccatttta
ccagatggaaaatcagtacttgatacctattgtacaaagaagaattcaaatggccaaaat
ctgaatgcttcttcagcatatggtaatgataagccagccccaggaaacaattttgtgatg
gatttacacttggagcttattcaggctcaacacagagtcgctgtgaaacttcttaacatg
aaacaaggtgttcaaatggatggcaaaaatctcaagtctaccaagtctcctgggaaagat
gtaaattgccttcatctcttcacagaatcagatataataaataaaattaaaaagaataag
ttatccaaagctatcttcctgatgcaaaaggctgtattgatgttccctaaaggatcagcc
agttcttcccaaaagcacctccttgaggaagcattagctttaattcagaaggttgaagct
gaacaaaatgcattgtgctccagtctgaaacaagctatgactagcaagaaaaacagaatc
ccccctcctcctctgttgctttccagatcacattgctccatgacatttaaaccagcccca
ttctcctcagatgttcaggtttcatggtacagtattttgggctgcgtagcagcaggaagc
aatttaaaagtaaggttaaataatcatcatcttccaaatgcaggagaagagataccagct
gatggaaaaagccttttcgaaataaaaggcttagatcccaatgaaaagtacatatttgca
gttgcagcatattcctcggatggaaagcttattggtgatgccattggggaaacaactaaa
ccaatccttgcttatccaccactttctgctactactgctcgagcatatctgactcagatt
gcctatcagacagataactatacattagccaaaaaagcattttcaccaatgtgggactat
tttgtcttggctccttcaacaccatctgctgatccagcagttatttctacaagcaataat
ttgactatatctcagaacagattatgtcttgatgctgtatctcagacttctccaatcctc
ttgcacctctttcttaggagcatttttattattaatgagattaatgttaaggaaggagca
ctcttctgtgattccatttgttccaaagagatactgtacaatggacaagttgctagacta
gctgaatgtgagagaatggtagcggcgattgaactcagtaattggttaaatgatgcaaat
tatgccctgcaatctgttgttcaatgttatggtctccttgctccgattatctatcataag
attgcttcagtgccagtagttcagatcctcatcaagtgtctaacagtcctgcaagaagtc
cccagttctactttacagaggaaacagacaagttgttatgagagtattcagcatatgata
gcttgctcctccttttatacagcacaggtactgcgttcatggaaagaatatgaactagca
ttaattattattaactatggaaaaaagttgttggattcttcacaaacatcccatggacag
tctaaattcagtagtattgaagaaatgcaaattgacacagaaacagaagatgagagtcct
tacaataaaaagaagtcccaagccgctgcagttgaaaaagcagctgagaacctagcagct
ctggaatcaaacctcctcaaactgacaagaccaggtactggaccagagattacaggacaa
gaagatcctttttttctctaccctataatttcatgttggacaacaaagaatgcctacagg
gaagtaatgaaattcaggaagaaacctcgtttccttgagttctttgttcaagttttgcac
aaaacactgaatgaagagaaatttcaacgaatactggaatggacaggcagtgtgaaagat
ttcttaagaaggaggaataaccactttcttggtatcaagggaactttggcaaaggaagtt
agtgagctcagtgtatctgaagatgcaaagcggcacacaacagcagtagtggagttccaa
aagcccctagaggcatcaactttgaagaaaccaagaaaagaagtaatgtccccctttaga
ggaagagagagtcttagacaatatttcctgagacacccaagtctggggaaatctccagaa
gcacaaaggaaacagcgagatgagatagaaaaagtagcttttcacaccctggtggtactg
ctgaatccaactgttagtaattacttaaaacgaaaaaggttccatcaggtatgtcttgag
gagatgccctggaggtctcagatgaacatttatctggcaattactcacttcaatttgttt
aaaaagcggctggaagagcaatataatattggagtttgcagtttacaacatttgaacagt
tatgatgttctggaccctgaaatattctcattaaataattctggcatcatagttgtgaga
ggaggaacagatgacaacataggaaccctgagtcacttgctgattaaaagaaaacaatca
gaaagtagcagaaaaataactgatcctgataaatcttcggaacacagcagtaaattcagt
gaagcagatactcctcgatctcaaatgacaaatgatacagagttatccacgactctttcc
gccagagagcatgaacggcctatgtctaatgccattctgttagagcatttcacaaaaacc
tttctgcatttaagaagagcagtggttctcgctcatcgtggtggccactggacattgctt
caaaatacctgccgagagctttggaactatagtcaagaagcgctgtcagttgccaagcat
tcacattctcttcaacgattatttcctattaccagaaattttcttatcagcaccatctgg
ttgccattctatttggcatcagatacgatacttgatatgataattgaactacaaactagt
aattcccttaagatttttgatcctgaaggagatttctgtgttccaagttgtgtaggagga
attgctgatgaggacgggggttctaatcttactttttgctgccctcttgatgatatcaat
gtggttgacttgagatggatatgtggtctggtacttagaactatagagctcttataccaa
atgaagaaatgggaagcactggtacatatagccttgcattttaacacaattacacatgaa
agatatgcagaacaagtgactccactgctggtatatgcacagagacaacttctggagaga
atacagcaattcagaggcccagatagtcctcagcctcatttcataaaatatcagggtgat
aatgcaaacaagctgatagaaaacagaataaaactcttcttctgctacagaagatatctg
caatatgatggatgcatttttatgttttacagatctgcttttaaatattggtgtcaagcc
cttgatgaaacactcaacatagctgatgtacttaacaactggcaagagttagatggcttt
tcaaaaaatgttactgacgactttacggatgaaagttctaaacattttagtgagaaatgt
atttatcaagctggaatttgggggtgcttgcatgcagcagttttagcagctaagatagct
cagtacatattgacatcaaatgtgagactaagaactaaatgctgcattttctctgctata
ctctttaagacattgtttaaagtctctattccacatcccacagctgattgtgactttgca
caatatgaaatacacaaacttattcctggcattgatttgttctctgatcgctacagagct
gatgtctccactgtagttgcaagtctgagttttcttatatttgaattgcattgtgcaaag
caaaatctaatagttttgccactgtttacattgtaccaatactttgtttctgaaatttgt
cgggacccggttaaatgtattgaaggaagaatcctcaagattaaagtacttacagattta
ggattttttgcggaggctttctctgaactgtgtctgctcaatcatggcgaaaaaattccc
tggaaagtacctgcaggctacagacttattgggaaaatgatgtcctttcagaaattcgac
tcatcaaaacccctcctgacaaatgcaaacttacaggtactagaagacgtatttaattgg
agtctacctccagctgtggtttcaatgtgtgatcaacaaatcatgaataaattaactttg
gccaaaatgcatttaatcatttgtctttcggcaacaataaatagtattcctgaaaaagtg
atgaaaacaatctattctgtggataacactagcttaaaaaagccaagcagaatcatggag
tcaagcataaaaattaatgcagaagttacaagaccccaggaacaaagcagcattattgtg
caactggtcagatgtaaagacgaattaaatatggctatgctaaaggggattttattgaca
gaaactgaagaaaggcttaactctcttgtagccaacatacagaatgaatatgacgggaag
atttctcactgttctgctgtagaattagagactgttattgaggccaagcttcagcttgca
gttatttctcagcagagacatcaaactgctttcagtgctgctttggctttctctgcaatt
cgacttcttcaggatgcaaacattttcaggaagaatgttccacatattcagctaaatata
cagcaaacagagcgtcgagattcttatgtagacagtactcagctgccttgcaatgtaata
gcacaagaacatatgaacatacgtctgtggctgagatgtcgcatggcattagtgactgca
ctaacagcacagatccgtggcattggtgatatgaaagaaaatgacatgactgattgctca
agtctaataaatgaagtaataatagaagcagaggccttcagtgacattgagacacaggct
gaagtgatggtgcaagctgttatactggacctgcaagaaaggcgccctgtgaccggcatt
aagcttcttctgcaggatataatcaatttactccaagaaaagccatttatttcccctatg
gcttctttaacactagtgaaaagtatgcttctgctggcagacatattgacaacacaaaca
gatgaggacactgagcatcactcttctgcaatcgaacgattaaacttgttaattctggct
cacaaatttactattaaacagatttttacccttggagaaccaatcgaacagtgcatagaa
gaccctgcattgacaagtccagtgattcctttgaaaaataattacttgccagctatcaat
ttactggcaaaagtcaaaatgagaattgcacatgcattagcgcaagaagtagcttgcaca
tctaaaagagagaatccattacaatggttacctgctctcagtcacctagaaacagcattg
gacctttgtagaacatccgcaacaagagaattagatttgcaagcggaaattctttttcag
aaaggtaaggtagagcgccagattattgaagcaggtaacaataagtcaccacgagctgct
gaaaccctgttggatgccataaaagtgagccagcgaaatgatcaaaactttgggctgata
aggaaatcctacctggagatagcactgttatatttccatttggctacatatagggaagag
gcttcacaaactgttaagatagaggcctccaaaacaaagactactcccaaagaacacttg
gcttctactgagagaatccccgttgcaactgaagtgtacagagcacaggcctggattgca
atcagagcagctacacaggtcagtgaagctatgcttgcctctcagctattaattggaaag
aagagtgttaaaggccaccaagtgaaagccacaacacaacagaacatcccagaatttgct
tctatggaccttcttgcttcatacaaagattttttgtctgatggatatgaggttctctat
aaaaaccttatggcctcttctatcaaaaatgaagaaatcatacaaagtgaaaaggaccaa
attgaaagtgaaggaacagaatataatatctccaaggacagccagtggaaacaaactata
acatgggtgcatttaatccgctaccataattacttaataagacataacatgagccctctc
tttgctgtctccaaatcaacacctggatcattttctatggaagatgcactgttcacttct
gtttttgatactggaattgttctacgtttagcagaaatgcatattttccttaaaaaacat
ctgtatatctattcaacatgttgtcttgaagattttccaaaacaactgcagtttttagaa
aaaccaggtgctaatctggctgctgttcctgtaaagatgtctctagaaattcttggagcc
ccacataaaatgtccacagtgagaatagcctccacagtttctttttgcacagacacagac
attcagctagacaacaaggcaacgattgctccaaacaaggaactttgcattcagtggtac
attccatctctggagaagtcaacaaaagatatggagactatggttttgctgctttatgct
tacaatacaaagtatgtcaagattgtcagcatcaagactttcaattcagccaatgtgttt
tctggtcacttgtggattccactgactagaattatttccttacatgagaaattgtctaat
gtgaaacagcaaatcgaaattttggtgcagtcatctacaagttttcctttacaagaacaa
agtgaaagacagaaacgagagccttcaacaaagtccaaaattaatctcgcaaaggtgcaa
cttgatgaaaaaatagaagaaatgcttaaacaatgtttgtctgaagtaaaagctttgctg
tgtgttgttccagatctgtcctctccattaattgaggtcccatttgatgttactttgcag
tcaataaaaaatttggagaaaatgtttgatcctgctaatggatgtatgatagctggagga
agccttttcaactgggttgtatctctgctcccttga
DBGET
integrated database retrieval system
