Trachemys scripta elegans (red-eared slider): 117879292
Help
Entry
117879292 CDS
T07347
Symbol
VPS13A
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117879292 (VPS13A)
Membrane trafficking [BR:
tst04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
117879292 (VPS13A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
RRM_fung
Motif
Other DBs
NCBI-GeneID:
117879292
NCBI-ProteinID:
XP_034630261
LinkDB
All DBs
Position
6:95350575..95621837
Genome browser
AA seq
3205 aa
AA seq
DB search
MVFESLVVDVLNRFLGDYVVNLDSSQLSLGIWGGAVALKNLEIKENALSQLDVPFKVKAG
HIGQLNLQIPWKYLYTQPVEAVLDGVYLLIVPTASIKYDAEKEDRQLLEAKQRELQRIED
AKQKIADQDKGQEEKQDTFVEKLVTQVIKNLQVKISNIHIRYEDDITNRDNPLSFGISLQ
NLSLQTSDQNWNPCLHDEATKLFYKLVRLDNLFAYWNVKSVMFYHGGYDESLNNLKHGVA
CRNVIPEGYDFVFRPISAKAKLRMNPRSDFDFSSPKMDLDVNLQDIAIEFNKPQYFSIME
LLESIDMMTRNLPYRKYRPDVPLHNNAKMWWKYIIKGILEVNVQPKLNMWSWEHIRHHRK
QVKNYKEMYKMKITSKKPSEEIVKLLEEFEKTLDIFNITLARQQAEVEVTKAGLKIYRPG
VKQDDENSGGWFSWIWGWSGEKNDEKKQEIKGASLEELMTLEEKAKLYAAIGYSETAVDP
TLPKTYEAMKLSVKLLSMSISIRENKEKPELIKFAVIDLSTMLIQRPGAQAIRFETKIST
FEVTGMSQEKFIPCLLSSRTVHSENNTSLLSIMFETNPLDEKADQKLRIESQPLEIIYDA
RTVNSLVDFFRPPKDVHLEQLTSATLMKLEEFREKTSTGLLYVIETQKVLNLKINLMASY
VLVPQNGFYESTSNLLLLDLGNLQMTSKSRSDVSELKVGQSTIEDIMSRAYDSFDIQLSS
IQLLYCKHHENWKEARKLKYSSQHILRPMDVKVEFSRAMVVTDARMPKFKIFGQLPLLSV
QISDQKLMGILELIDSIPKPESGPATMSAPKPAQIAVTPLLATPQISQNVLPLLELHSLT
ESESEEEFYDAPTSPVEEMPFFEASSGSLTRVNSVRRKRLQKQESLKNMTEFQLRFEISE
VLIQLCRLADGTEKPVLQLEVVGLGTELKFRTFDMAANAFLREVCLLCPEYMDDKDKPVY
IITTLDNTEDDLLTLEYVKADINGPELKTAYKNVLQLLKVNFSSLDVHLHNEALLNAMNY
LNNLLPKQETKITEEVVEEKEEKKDVLKKLTSKKSKYEDVIDLHVCADLSCLRVFIREQK
RRISEIHIEGLDCQVIMRKAATEVFAKLKNIIIMDSDEMAWYKKALYITGKEVFSFKMMS
YVDATDGAAYTNMNIVDSQVYLTVGCIQVVFVNKFVSTILAFINNFQAAKEAITEATVQA
AEKAATGVKELAQRSSRMALDINIKAPVIIVPQSADSTNVLVADFGLITVKNQFSVKTKA
QCSLPPVIDSMTVKLSELKLYRTHFERGSLQSEIQLLQPLNLEVIVERNLAAAWYSEVPD
IKILGRLKPMNLILSQEDLTTILRTLNENLGDSSGAPPPLPEPKDTSSNCSDALSTSQKS
AGITMVTTAVVELRSPVKVKTTLKLDFLFDSLTLVLYSPNSKQVSALDQRDDHLKLAEFK
LVLISAAAKMLSDGSMNASVKLANCTLDDKRLTVQKTTPRMVEMKHGSEKKDMVDVSYKQ
GRDGTVLDTIVQDLYLCASMEFLLTVADIFLKASAESAAAQRNIKQTLAVKEQASMQPVS
SMEMNIIVKNPEIVFVADLTRSDAPALVVTTQCEIFIKNSPQMYKMTAAVKDIQMKACPF
LAEKRKGNITTVLQPCDFFFKMMQSGNNPQMADLSIKSLTIKVSPIIINTVITITSALSP
TTETSEEEISPIPPDLWDKKDIKKLKMWFLEKSNENENKNTAAELVLTGETLNMRIESVI
VTLEAGVGHRTVPMLLAKSSFSGEVKNWSTLINLHSQLELEVHYYNEMFGVWEPLLEPLE
IEKSDEFKPWTLGIKMKKKAKEALESDAEEEHYKVPEYKTVINISSKDQLNITLSKCGLQ
MLSNLGMAFAEAASKTSDIFKKDQAPFVIMNSLGLPITVSPSDSFKVLNVESGAKTFHLK
DGESLNMEFLRTKSESDQFTAMTTLSSKMFYIQLSPQKHSTADKIPLTKVGRCLYRVRHE
ESGVERSIVCQIDTVEGSKMITIRSPVQIRNHFSIPLSLFEDGTCLGTASPINEFNIPLT
SYRSLLCLQPVTDENGIGGEYEMCEGISFDEIMKNFGNLIQRKCQSVKSTNHSLIINVVP
VKDTLTSSVCADDRWDLPYVIHLWPSVLLRNLLPYPITYSLEGNYNKWDTLEDGCSTQIH
NAVLDQTKLELQLLNYLDQNWKSEYHIRTNQQEIGFITFSCITEVDKTELDIAVHVTYTT
GQMIIAIHSPYWMVNKTGRMLQYKADGIHRKHPPDYKKPLLFSFQPKNFFQNNKVQLMVT
DSELSDQFSLDTVGSHGSVKCKSHKKEYHVGVTIDNSSFNITRIVTFTPFFMVANRSKYT
LEVAEEGKEKWIPITFQQGSENLWERELDGLCIPFWPENDSNKLLIRVENSNIPPKMICF
NKQENCTLLYLDNKLGGIIVDVNLTEHSTVITLSDYHDGAAPFLLINHTKEEMIEYGQSS
LNVMEDHLMPNKAVLYTWADPVGSRKLKWKCGKCNGEVTQKDDMMDSLILDHKKRVYLVS
FFEGLQRIILFTEDESVFKATYESEKVELAEQEIVLSLQDVGISLVNNYTKQEVSYIGIT
SSDVVWETKPKKKSRWRPMSIKQTEKLERAFKEYSELSPSENKIVELETNVMVCLTPNGG
NMKIQQPNEIPVRRNYLPALNVEYSTSAHQKSFRVQVYWIQIQNQIPGAIFPFVFYPIKP
PKSITLDSAPKPFIDVSIVMRTAGHSQISRIKYFKVLIQEMDLKLDLGFLYALAELFTQA
EVPKDQEVELFKKDIESVQKELMSMSSTDTSQISLYEYFHISPIKLHLSFSLSTGGEDSN
KEERQHELIPVQSVNLLLKSIGATLTDVQDVVFKLAFFELRYHFCTTQQLQSAVIKHYSK
QAIKQMYVLILGLDVLGNPFGFIRDLSEGVEAFFYEPYQGAIQGPEEFVEGMALGLKALV
GGAVGGLAGAASRITSAMAKGVAAITMDEDYQQKRRETMNKQPSGLREGITRGGKGLVSG
FVSGITGIVTKPIRGAQKEGAAGFFKGVGKGLVGAVARPTGGIIDMASSTFQGIKRATDS
SDDVTSLRPPRFFCEDGVIRPYRLRDGTGSQMLQKIENGRFAKLRYITHAMVNNTDLLMI
TKSGVLFVTKGTFGQLTCEWQYTYDEFTKEPFIVDGRRLRIEAKERVKSVFHAKEFGKII
NFRTPEDAKWILSKLEEVRESHPKL
NT seq
9618 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcgctggtcgtggacgttctgaaccggttcctgggcgactacgtggtg
aacctggacagctcccagctcagcctgggcatctggggaggagccgtagcacttaagaat
cttgaaataaaggaaaatgcactgagtcagctggatgtaccatttaaagtaaaagcagga
catattggtcaacttaatctacaaatcccatggaaatacctttatactcaaccagttgag
gctgttctggatggagtttatttgcttatagtgccgacagccagcataaaatatgatgct
gaaaaggaagacagacagctcctagaagcaaagcaaagggaactacaaagaatagaggat
gcaaaacagaaaatagctgaccaggataaaggacaagaagagaaacaagacacttttgta
gaaaaactagtcactcaggtcatcaaaaatcttcaggtgaaaatttccaacattcatatt
cgatatgaagatgatatcacaaatcgagataatcccctgtcatttgggatctcacttcag
aatctcagtttgcagacctcagatcaaaattggaacccatgtttacatgatgaagctacc
aagttgttctataagcttgtacgtctggataacctttttgcttactggaatgtgaagtct
gtgatgttctaccacggaggttacgatgaatctttgaataatttaaagcatggagttgcc
tgccgcaatgtgattccagaaggttatgattttgtattccgtccaatttccgctaaagcc
aaactccgtatgaatcctcgatctgattttgacttttcttcaccaaaaatggacttagat
gtaaatttacaggatatagccattgagttcaataaaccacagtacttcagtattatggag
ctccttgagtctattgatatgatgacccgaaatctgccataccggaagtacagacccgat
gttcctttgcacaacaatgccaagatgtggtggaaatacattattaaaggtattctggaa
gtaaatgttcaacccaagcttaatatgtggtcatgggaacacattcgacaccatagaaaa
caagtgaagaactacaaagagatgtataaaatgaagataacatcaaagaaacctagtgaa
gagattgtaaaattgttagaggaattcgaaaagaccctggatatatttaacatcacatta
gcaagacaacaggcagaagttgaggtaactaaagctggattaaagatttacagaccaggg
gttaagcaagatgatgaaaattctggtggttggttcagctggatatggggttggtcagga
gaaaaaaacgatgagaagaaacaagaaataaagggtgcaagtcttgaagaattgatgaca
ctggaagaaaaggctaaactctatgcagcaattgggtatagtgaaacagctgttgatcca
acgttgccaaaaacatatgaagctatgaagctttctgtaaagctgttaagcatgtccata
tcaataagggaaaacaaggagaaacctgagctgatcaaatttgcagtaattgacttgagc
acaatgttaatacaacgaccaggtgcacaagcaataagatttgaaacgaaaataagcaca
tttgaagttacaggcatgtctcaagaaaaattcataccctgtctgctatcttctcgaaca
gtccattccgaaaacaatacatcactcttgagcataatgtttgagaccaatcctttagat
gagaaagctgatcagaagcttagaatagaatcacaaccgttggaaataatatatgatgca
aggactgtgaatagtttagtggatttcttcaggcctccaaaagatgtacatttagagcaa
ctgacctcagcaactttgatgaagcttgaagaatttcgtgagaagacgtcgacaggatta
ttatatgttattgaaacacagaaagttctcaatctaaaaattaatttaatggcttcatac
gtcctcgttccacaaaatggattttatgaatctacgtcaaatttacttcttctggatctt
ggtaacctacagatgactagtaaaagtcgttctgatgtgtcagaactcaaagtaggacaa
agtaccattgaagatatcatgtcaagagcttatgatagctttgatattcagctcagcagt
atacagctactttactgcaaacatcatgaaaattggaaggaggctcgtaagctaaaatat
tcatcacaacatatcttgcggcctatggatgtgaaagtggaatttagcagggcaatggtt
gtcactgatgcaagaatgcctaaattcaaaatttttggacaactgcctttgctctctgtt
caaatctctgaccaaaagctgatgggtatcttggagctaattgacagcattcctaaacca
gaaagtggtcctgctaccatgtctgctcccaagccagctcagattgcagtaactcctctg
cttgcaacgccacaaatttcacaaaatgtacttcctcttttggaacttcattcattaact
gagtcagaatcggaagaagaattttatgatgcccccaccagtcctgtggaggagatgcca
ttttttgaagcatcttctggctctctgaccagagttaacagtgtcagaagaaaaaggtta
cagaagcaagaatctttgaagaatatgacagaattccagctaagatttgaaatatctgag
gtcttaattcagttgtgtcgtcttgctgatggtactgaaaagcctgtgctgcagctagaa
gttgtaggattaggcactgaacttaaattcagaacatttgatatggctgcaaatgctttt
cttagagaagtctgtttactgtgtccagagtatatggatgataaagacaaacctgtttac
atcattacaacattggataatacagaggacgatcttcttacactggaatatgtaaaggct
gatattaatggaccagagttgaaaactgcttacaagaatgttctgcagctgttaaaggtg
aatttctcctctctagatgttcatttgcataatgaagcacttctgaatgccatgaattac
ctaaataatcttctaccaaaacaagagactaaaataacagaagaggtagtcgaggaaaaa
gaagagaaaaaggatgttcttaagaaattaacatcaaaaaaatccaagtatgaggatgtc
atagaccttcatgtctgtgcagatttatcctgtttgcgggtttttattagagaacaaaaa
cgcagaatatctgaaattcacatagaaggtcttgattgccaagtgatcatgaggaaagca
gcaactgaagtgtttgcaaaattaaagaacataattattatggattctgatgagatggca
tggtataaaaaggctctttatatcacaggaaaagaagtcttcagttttaaaatgatgtca
tacgtggatgctacagatggtgctgcctatacaaatatgaatattgtggacagccaggtt
tatttaactgttggttgcattcaagtagtttttgtcaacaagtttgtttcaactattttg
gcttttataaataacttccaagctgctaaggaagctattaccgaggcaactgttcaagca
gcagagaaagcagctacaggtgtaaaagaactggcacaacggagttcccgaatggcactg
gatattaatattaaagcacctgtaatcatagtgccacagtcagcagactctactaatgtc
cttgttgctgattttggtctaattactgtaaagaatcagttctctgttaaaacaaaggca
caatgtagccttccacctgttattgactctatgaccgtgaagctgagtgaactaaaacta
tacagaacacattttgagagaggttcattacaaagtgaaatacagctgttgcagccacta
aatttggaagttattgttgaacgaaatttagctgctgcctggtatagcgaagtgcctgat
attaaaatacttggacgacttaagcctatgaatctcattctcagtcaggaagacttaacc
actatattgaggacattgaatgaaaatttaggggacagttctggtgctccacctccttta
ccagaaccgaaagatacaagtagcaactgcagcgatgccctcagtacttcccagaaatct
gcaggaataactatggtaacaactgctgtggtggaattgcgttcacctgttaaagttaaa
acaactctaaaactggactttctattcgactctctcactttggtattgtacagtccaaat
tctaaacaggtttctgctttggatcaaagagatgatcatttgaaacttgcagagtttaaa
ttggtcttgatatcagctgctgccaaaatgttatcagatggttcaatgaatgcttcagtc
aagttagcaaactgcacattagatgataaacgactgacagtccagaagaccactccaaga
atggtggaaatgaaacatggatctgaaaagaaggacatggtggatgtaagctacaagcag
gggagagatggcactgttctggacacaattgttcaagacttatatctctgtgcgagcatg
gaatttctacttactgttgcagatatattcttaaaggctagtgcagaaagtgctgctgca
cagaggaatatcaagcaaactttagctgtaaaggagcaagcatctatgcaaccggtatct
tcaatggaaatgaacattattgttaaaaatccagagatcgtgtttgtggctgatttaaca
agaagtgatgctcctgcattggtggttacaacgcagtgtgagatctttattaagaacagc
cctcaaatgtataaaatgacagctgctgttaaagatatacaaatgaaagcctgccccttt
cttgcagaaaagagaaaagggaacatcactacagtattgcagccttgtgatttcttcttc
aaaatgatgcagtcaggtaataatccacaaatggctgacctatcaattaaatccttaaca
ataaaggtttcacccattatcataaatacagtgattactattacatcggcactttctcca
actacagagacttcagaagaagagattagtccaattcctccagacctatgggataagaaa
gatataaaaaaattaaaaatgtggtttcttgaaaagtcaaatgaaaatgaaaataaaaat
acagcagctgagttggttctcacaggggagacattaaatatgagaattgaatcagtcatt
gtaactcttgaagctggagttggtcacagaacggtacctatgcttttagcaaagtcgtct
ttttctggagaagtcaaaaattggagtacgctcatcaacctccattcccagcttgaactg
gaggtgcattattataatgagatgtttggtgtgtgggaacctttgcttgaaccactagaa
attgaaaagagtgatgaattcaaaccatggactcttggaatcaagatgaaaaagaaggct
aaagaagcattagaatcagatgctgaagaagaacactacaaggtgccagaatataaaaca
gtaataaacatctcctcgaaagaccagctgaacattacactatccaaatgtggactacaa
atgttgagtaacctgggcatggcatttgctgaagcagctagcaaaacttcagacatcttc
aaaaaagatcaagcaccatttgtaataatgaattccttaggacttcccatcactgtctca
cccagtgattcctttaaagtccttaatgttgagtctggagcaaaaacatttcatttaaaa
gatggggaaagtctaaatatggagtttctcagaactaaaagtgagagtgaccagttcaca
gcaatgaccaccctaagcagcaaaatgttttacattcagctcagtcctcaaaaacactcc
actgctgacaagattccgttgacaaaagttggtcgatgtctttatagagtaagacatgag
gagtcgggtgttgaaagatccattgtttgtcaaattgatacggttgaagggagtaagatg
ataactatacgttctcctgtacagataaggaatcatttttcaattccactgagtcttttt
gaagatggaacatgtctaggaactgcttcaccaataaacgaatttaacataccactgacc
tcttacagatcactactttgtttgcaaccagtaactgatgaaaatggaattggtggagaa
tatgaaatgtgtgaaggaattagctttgatgaaattatgaaaaattttggcaacttaata
cagaggaaatgccaatccgtgaaatcaactaatcattcacttatcattaatgttgtgcca
gtaaaagataccttgacatcttcagtatgtgcagatgatcgatgggatttaccatatgtt
attcatttatggccctctgtccttctccgcaatcttcttccttatccaattacttattcc
ctagagggaaattataacaaatgggacactctagaggatggatgttcaactcagattcat
aatgcagtattggatcaaaccaagctggaattgcagttacttaattatcttgatcaaaat
tggaaaagcgagtaccatataagaactaatcagcaagaaattggcttcatcacattctct
tgtatcactgaagtggataagactgaactagatattgctgttcatgtgacctatacaact
ggacaaatgatcatagcaattcacagtccgtattggatggtaaacaaaactggccgaatg
ctgcaatacaaagctgatggcattcaccgcaagcatcctcctgactacaaaaagccactt
cttttttctttccagcctaaaaatttcttccaaaataacaaggtgcagcttatggtgact
gacagtgaactgtctgatcagttttctcttgatactgttggtagtcatggttctgttaaa
tgtaagagtcacaaaaaggagtaccatgttggtgtcaccatagataacagcagttttaac
attacaagaatcgtaactttcacccccttttttatggtcgcaaaccgaagcaaatatact
ttagaagtagctgaagaaggcaaggaaaaatggattcctatcacttttcagcaggggtct
gagaatctatgggagagggaacttgatggcctgtgcattcccttttggcctgaaaatgat
tcaaataaattgctgattagagttgaaaactccaacattccccccaagatgatctgtttt
aataagcaagaaaactgtacattgctgtatttggacaataagcttggtggcattatagtg
gatgttaacctgaccgaacattctacagtaattactttatcagattaccatgatggtgca
gctccattcctgttaattaaccataccaaggaagagatgattgagtatgggcagagttct
ctcaatgtgatggaagaccatcttatgccaaataaagcagtattgtacacctgggctgat
ccagtaggctctagaaagttgaaatggaaatgtggaaagtgcaatggggaagtaacgcaa
aaagatgacatgatggactctctcatcctggatcataaaaagagagtttatttagtttca
ttttttgaaggcttgcaacgtattatcctattcactgaagatgagagtgtatttaaagca
acatatgaaagtgaaaaagtagaactagcagaacaagaaattgttctatcattacaagat
gttggaatttctttagtcaacaattatacaaagcaagaagtgtcctacattggaattaca
agttctgatgtagtttgggagacaaaacccaagaagaaatcaaggtggaggccaatgagc
attaagcagactgaaaagttagagagagcatttaaagaatacagtgagctatccccttca
gaaaacaagattgttgagctggaaacaaatgttatggtttgtttaactcctaatggtggt
aacatgaaaatccagcaaccaaatgaaattcctgtaagaagaaactatttgccagcttta
aatgtagaatatagtacatctgcacatcaaaagtccttcagagtccaagtttactggata
cagatacaaaaccagattcccggagccatatttccttttgtgttttatcctattaaacct
ccaaagtccatcaccctggattcagcaccaaagccatttattgatgtgagtattgtcatg
cggactgcagggcattctcagatatcacgtattaagtactttaaggtgctgattcaggaa
atggatctcaaattagatcttggattcctatatgcattggctgaactatttacacaggct
gaggtgcccaaagaccaagaggttgaacttttcaaaaaggatatagaatctgtccaaaaa
gaattgatgagtatgtcatcaacagatacatcacaaatcagcttgtatgaatattttcat
atctctccaatcaagttacatttaagtttctcactgagcacgggtggagaagatagcaac
aaagaagaaagacagcatgaactgattccagttcagtccgtgaaccttctgctgaagagt
attggtgccacactcacagatgtacaagatgttgtcttcaagttggctttcttcgaactc
cggtatcacttctgtactacacaacaactacaatcagcagttattaagcattattcaaag
caggccattaaacaaatgtatgttcttattcttggccttgatgttttgggcaatccattt
ggattcataagagacttgtctgaaggagtggaagcattcttctatgaaccttaccaggga
gccatccagggtcctgaagaatttgtagagggaatggcactcggtcttaaagcactagtt
gggggagctgtaggtggattagctggtgctgcatcaagaatcactagtgctatggctaaa
ggagtagcagcaataactatggatgaagactaccagcagaaaagaagggaaaccatgaat
aaacaaccatctggccttagagagggcatcactcgtggagggaaaggcttagtgtctgga
tttgttagtggcataacaggaatagtgacaaaaccaataagaggagcccagaaagaagga
gcagctggtttcttcaaaggtgttgggaaaggtttagtgggagcagtagcaaggcccact
ggaggaatcattgacatggcaagcagcacatttcagggtattaaaagagctacagattca
tctgatgatgtgacgagtctgcgaccacctcgtttcttttgtgaggatggagttattaga
ccttacaggttaagggatgggaccggaagtcagatgttacagaaaattgaaaatggaaga
tttgcaaaactcagatatattacacatgccatggtcaataatacagatttgttaatgata
acaaaaagtggtgttttgtttgtgacaaaaggaacatttggacagctgacatgtgagtgg
cagtacacttacgatgagtttaccaaagagccattcatcgttgatggaagaagattacgc
attgaagccaaggaacgagttaagtctgtatttcatgccaaagagtttggaaaaataatt
aattttaggactccagaagatgcgaagtggatcctttctaaactggaagaagtgagagaa
agtcatccaaagttgtaa
DBGET
integrated database retrieval system
