Trachemys scripta elegans (red-eared slider): 117879328
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Entry
117879328 CDS
T07347
Symbol
ERCC8
Name
(RefSeq) DNA excision repair protein ERCC-8 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03420
Nucleotide excision repair
tst04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
117879328 (ERCC8)
09124 Replication and repair
03420 Nucleotide excision repair
117879328 (ERCC8)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117879328 (ERCC8)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117879328 (ERCC8)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
117879328 (ERCC8)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
117879328 (ERCC8)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
EIF3I
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD_LRWD1
Beta-prop_TEP1_C
WDR90_beta-prop_4th
ANAPC4_WD40
NBCH_WD40
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_RIG_1st
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_Nup120_160
Beta-prop_HPS5
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
117879328
NCBI-ProteinID:
XP_034630324
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Position
6:complement(35367003..35427772)
Genome browser
AA seq
470 aa
AA seq
DB search
MLAFISARQAGLDDPLRLRRAESTRRVLSLELNKDRDVERIHGSGVNTLDIEPVEGRYML
SGGSDGVIVLYDLENFSRKPCYTCKAICSVGRSHPDVHKFSVETVQWYPRDTGMFTSSSF
DKTLKIWDTNTLQPADVFNFEGTVYSHHMSPVATKHCLIAVGTKSPKVQLCDLKSGSCSQ
ILQGHRQEVLAVAWSPHHEYVLATASADSRVKLWDVRRASGCLITLDQYNGEKSKASSEA
ANTAHNGRVNGLCFTSDGLHLLTIGTDDRMRLWNSSSGENTLVNYGKVCNESRKGLKFTT
STGCDPEFAFVPYGSTIAVYTIYSGELITMLRGHYNTVDCCVFQPNFQELYSGSKDCNIL
AWVPALREPMPDEDAAKFQQPSIDYDSDTYWLLLSCLQFPVTVKRCSTASASHTPSPVCC
QLFCLCYSSLVVVCIIPLLLFRFVICTWFFGQLKHFYLFSSFSASFWSGM
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgttggccttcatttcggcccgccaagccggtctcgacgatccgctgcggttgcgccgg
gctgagtccacccggagggtactaagcttggagctaaacaaagatagagatgtggaaaga
atccatggcagtggtgttaacaccctggatattgaacctgttgaaggaagatacatgtta
tcaggtgggtcagatggtgttattgtactttatgaccttgaaaacttcagcagaaaacca
tgttatacatgtaaagcaatttgttctgtgggcaggagccatcctgatgtacacaaattc
agcgtagagacagttcagtggtaccctcgtgacactggcatgtttacatcaagctcattt
gataaaacactgaaaatatgggatacaaacacattacaacctgcagatgtgtttaatttt
gagggaacagtttatagccatcatatgtctccagttgctaccaagcactgcttaatagca
gttggtaccaaaagccccaaagtacagctttgtgacttgaagtctggatcctgttctcaa
attctgcagggtcacaggcaagaagtgctggcagtggcctggtccccgcatcatgagtat
gtcctggcaactgcaagtgctgacagtagagtaaaactctgggatgtaaggagagcatct
ggatgtctgattactcttgatcagtacaatggggagaagtcaaaagcatcttctgaagca
gcaaacactgctcataatggaagagttaacggcttatgctttacaagtgatgggcttcat
cttctgactattggtacagatgaccggatgagactctggaatagttccagtggggaaaac
acactggtgaactatgggaaagtctgtaatgaaagcagaaaaggactcaaattcaccact
tctactggctgtgatccagaatttgcatttgtaccatatggtagcaccattgctgtttat
acaatctactcaggagaactgataactatgcttaggggacattataatactgttgattgc
tgtgtatttcagcctaattttcaggaactatatagtggtagcaaagattgcaatatactt
gcgtgggtgccagctctacgagagccaatgcctgatgaagatgctgcaaagtttcagcag
cccagcatcgactacgattctgatacatattggctactcctctcctgtctacagtttcct
gtgacagttaaaaggtgcagcactgcctctgcaagccataccccttctcctgtttgctgc
cagctcttctgcctctgctacagcagtctggtggtggtttgcatcattcctctcctcctc
tttaggtttgttatatgtacctggttttttggacagttaaagcatttttatttgttttca
agcttcagtgcctccttctggtctgggatgtga
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