Trachemys scripta elegans (red-eared slider): 117879429
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Entry
117879429 CDS
T07347
Symbol
THBS4
Name
(RefSeq) thrombospondin-4
KO
K04659
thrombospondin 2/3/4/5
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04145
Phagosome
tst04510
Focal adhesion
tst04512
ECM-receptor interaction
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117879429 (THBS4)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
117879429 (THBS4)
09144 Cellular community - eukaryotes
04510 Focal adhesion
117879429 (THBS4)
09142 Cell motility
04820 Cytoskeleton in muscle cells
117879429 (THBS4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117879429 (THBS4)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tst04147
]
117879429 (THBS4)
00536 Glycosaminoglycan binding proteins [BR:
tst00536
]
117879429 (THBS4)
Membrane trafficking [BR:
tst04131
]
Endocytosis
Phagocytosis
Opsonins
117879429 (THBS4)
Exosome [BR:
tst04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
117879429 (THBS4)
Exosomal proteins of colorectal cancer cells
117879429 (THBS4)
Exosomal proteins of bladder cancer cells
117879429 (THBS4)
Glycosaminoglycan binding proteins [BR:
tst00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117879429 (THBS4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
COMP
EGF_3
cEGF
EGF
DUF7630
DUF4107
Motif
Other DBs
NCBI-GeneID:
117879429
NCBI-ProteinID:
XP_034630510
LinkDB
All DBs
Position
6:complement(40643005..40708994)
Genome browser
AA seq
953 aa
AA seq
DB search
MLSKRQVTVLLLQVLLQLCPGSGVPSAPQVFDLLSSPSQRLVNFLQQALADPTLNEVYVL
STFKLQTKSTATIFGLYSSDDNSKYFEFTVVGRLNKVILRYVKNDGKLNSVMFSNTQLAD
GKRHAVLLRLSGLQRGSITAELYLDCMQVDAIQGLPKAFSGLYHSSESVEIRTLPKKAQD
TLDELKLVVKGSLSQVASLQDCFLQQIEPAAQNTDDFNRQFMGQMMQMNQILGDVKDLLR
QQIKETTFLRNTIAECQACGLGATNFPTAPPVPPKPKCEANSCFRGVRCIETADGFQCGP
CPEGFTGNGVTCSDIDECRYSPCFPGVGCVNIVPGFRCEACPPGYTGQTVQGVGINAAKN
NKQVCLDIDECNNNGQNGGCVPNSQCINTMGSYRCGPCKPGYTGDQVKGCKAEKSCRNRA
LNPCSVYAQCIEERQGEISCTCGIGWAGDGYICGKDIDIDGYPDEKLPCSADSCRKDNCR
FVPNSGQEDADGDGLGDACDEDADGDGIPNEEDNCVLVPNVNQRNSDQDIFGDACDNCRT
VLNNDQRDTDGDGKGDACDDDMDGDGIKNLLDNCQRVPNRDQKDGDNDGVGDACDSCPTI
SNPNQSDIDNDLIGDSCDTNQDSDGDGHQDSTDNCPTVINSSQLDTDKDGLGDECDDDDD
NDGIPDLMPPGPDNCRLVPNPGQEDDNSDGVGDICESDFDQDTVIDRIDICPENAEITLT
DFRAYQTVVLDPEGDAQIDPNWVVLNQGMEIVQTMNSDPGLAVGYTAFNGVDFEGTFHVN
TVTDDDYAGFIFGYQDSSSFYVVMWKQTEQTYWQATPFRAVAEPGIQLKAVKSKTGPGEH
LRNSLWHTGDTNDQVRLLWKDPRNVGWKDKVSYRWFLQHRPQVGYIRARFYEGSQLVADS
GVTVDTTMRGGRLGVFCFSQENIIWSNLKYRCNDTLPEDFQEFQAQQLGVGDI
NT seq
2862 nt
NT seq
+upstream
nt +downstream
nt
atgctgagcaagcgccaagtcaccgtcctgctcctgcaagttctcctgcagttgtgcccg
ggctctggcgtcccgtctgccccgcaagtttttgatcttctttcatctcccagccagaga
ctggtaaactttctacagcaagcgcttgctgatcctacattgaatgaagtatatgtgctc
tcaacattcaaattgcagacaaagagtacagccaccatatttggcttatattcttcagat
gacaatagcaagtattttgaatttacagtggtggggcgattgaataaagtcatcctgcgt
tacgtgaagaatgatgggaagttaaactctgtgatgttcagcaacacccagctggctgat
gggaagcgtcatgcagtccttttgaggttgagtggtctgcagcggggatccatcacagca
gagttatatctggactgcatgcaggtggatgccattcaaggtctacctaaagcattttca
ggtctataccacagctcagaatcggtggaaattcgcaccctaccgaaaaaggcacaggac
actttggatgagctgaagctggtagtgaaagggtcactttcccaagtagcaagtctgcaa
gattgcttccttcagcagattgagcctgctgctcagaacacagatgattttaataggcaa
ttcatgggtcaaatgatgcaaatgaaccaaatactaggagatgtgaaagaccttctcagg
cagcagatcaaggaaacaactttcttgagaaatactatagcagaatgccaggcatgtggt
ttgggagctacaaactttccaactgcacccccagtgcctcctaaacccaaatgtgaagcc
aactcctgtttcaggggtgtcaggtgcatagagacagcagatggatttcagtgtgggccc
tgtcccgaagggttcacaggaaatggagttacatgctcagatatcgatgagtgccgctat
agcccatgcttccctggggtaggctgcgtgaacattgttccaggcttcagatgtgaggct
tgccctccaggatacacaggacagacagttcagggggtagggatcaatgctgccaagaac
aataagcaggtctgcttggatattgatgaatgtaataataatggccaaaatggaggatgt
gttccaaattcccagtgcataaacaccatgggttcttaccgctgcggcccatgcaaaccc
ggttacactggagaccaggtcaaaggatgcaaggcagagaaaagctgcagaaatcgagcc
ttgaacccatgcagtgtctatgcacagtgtattgaagaaagacaaggagagatttcatgt
acttgtggcattggttgggctggtgatggttatatctgtggaaaggacatagatattgat
ggctatcctgatgaaaaactcccatgctctgctgatagctgcagaaaggacaactgcaga
tttgttccaaactcaggacaagaagatgcagatggtgatggactcggagatgcctgtgat
gaggatgcagatggagatggaattcctaatgaagaggataactgtgtattggtgccaaac
gttaaccagaggaacagtgatcaagatatctttggagatgcttgtgacaactgtcgcaca
gtcttgaataatgaccagagggacacagatggggacgggaaaggagacgcctgtgatgat
gacatggatggagatggtattaagaaccttttggacaattgtcagagggttcccaatcgg
gaccaaaaggacggggataacgacggtgttggtgatgcttgtgacagctgccccactatc
agcaaccccaaccagtcagatattgacaatgacctgattggagattcttgtgacactaac
caagacagtgacggagatggacaccaggacagcacagacaactgtcccacagtcattaac
agctcccagctggacactgataaggatgggctgggtgatgagtgtgatgatgacgatgat
aatgatgggattccagacctcatgcctcctggccctgataactgcagactggttcccaac
ccaggacaggaagatgacaacagtgatggagttggtgacatatgtgaatcggattttgac
caggacacagtaattgatcgaattgatatttgccctgagaatgctgagattaccctgaca
gatttcagggcttatcaaactgtggtcctggatcccgaaggtgatgctcagattgatcct
aactgggtggttctgaaccagggtatggagattgtacagaccatgaacagtgatcctggc
ctcgcagttggttacacagctttcaatggggttgactttgaaggcacctttcatgtgaac
acggtgacagatgatgactatgctggctttatttttggttaccaagacagttccagtttt
tatgtggtaatgtggaagcagacagaacagacttattggcaagcaactccattcagagct
gttgcagagcctggcattcagcttaaggctgttaaatctaagactggccctggcgaacac
ctcaggaattcactctggcatactggggacaccaatgaccaagtcagactgctatggaaa
gaccccagaaatgtaggttggaaagataaagtctcgtatcgctggttcttgcagcacaga
ccccaggttggatacatcagggcaagattttatgaaggttctcaactggtggcagattct
ggagtaactgtagacactaccatgcgtggaggaagacttggtgttttctgcttctctcag
gaaaacattatttggtccaacctgaaatatcgctgcaatgacaccctcccagaggacttt
caggaatttcaagctcagcagcttggagttggagatatttaa
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