Trachemys scripta elegans (red-eared slider): 117879454
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Entry
117879454 CDS
T07347
Name
(RefSeq) RNA exonuclease 1 homolog isoform X1
KO
K14570
RNA exonuclease [EC:3.1.-.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
117879454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tst03009
]
117879454
Ribosome biogenesis [BR:
tst03009
]
Eukaryotic type
Pre-60S particles
RNases
117879454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EloA-BP1
RNase_T
zf-C2HC_3
Motif
Other DBs
NCBI-GeneID:
117879454
NCBI-ProteinID:
XP_034630545
LinkDB
All DBs
Position
6:complement(110542019..110570786)
Genome browser
AA seq
1094 aa
AA seq
DB search
MLRSAGYFSGFSCPFDGASGAGCPRPHCQYRHEAGRSGQQPLSDAPAMELGKSIQELERI
KKAIESVKTEVEEGQKKLSQYNLQDEIPKNSLTSKTNDVKGNKTSSDDDGLCSSLTKDKC
LVAPVSKYSSKGCHLVSSKYVIDHSCPATDLEYDPLLNYSAGLLSSSIMKEQEDEIQQFK
RVKMPLDDFHMESPKMSPCGNQHGSPKKRSRSYSPIKLEIKLQESDDDDILVIDAPPLTV
TKKPRISRSFKNWNREENKQVAVTRAENLQNSNVAEDALKSIEEKRAEVTVILQKDDNAD
VSNPEKSLKTPPKTQSAYLPDVKINALKSLNNLCEQRKSFTVSKENNISSISHIKAQMQK
ETLKKEDPKSEISVKTSVEELSTNKYKNTPTCKSEAQTSLYFEASSKDKTVLTAQGSCKK
LPVNIGKIQIIHENGENEVLENALIHPSTPLNLGEKICHDVDLLTKNRSGERNSNMNTTI
QESEIIILDSSSEEEMEYSEEDTELSESDDPIEECRRIFNEFVESEAQKQEIAKQALGAH
AEVDTLDTKTNMVPGQKKRIAHTAKFDVQTNKEILVPFKAPLPQQSCPTRILQAQQQAVQ
ITAAVKSGQAFVAATSGQKKTVPVLSTTQIQNVGPMVCLNLLEVQPVATSSGQLNVFLQG
NAVTAMPCRPSNISIKRIAPMPIKVSSRRRLSIIPESGSKVPHDTRQRYVNFFVEEYLKV
CRTVNEAFDKALVEEKAIYDRCGSKNMYLNIAVNTLKKLRDQGSLSPNGQSCGSRWTNTT
GSRKSEEKNDFSGIVLYRILKGYVLTEEQLHESGYPQPNPEKPGSAILGNGITKTAVSDA
SKRVCCRCGEIYTVTASGKHIRKEECNYHSGRVLRQKVPGGLETRYSCCEGVVGSPGCQV
AKLHVQDGRKENLDGFVKTFIKLTPADGNHGVFALDCEMCYTTQGLELTRVTVVDSNLQV
AYDTLVKPDNEIIDYNTRFSGVTEEDLKNTSSSIRDVQAILLNLFSADTILIGHSLENDL
FALKLIHNTVVDTAVVFPHRLGLPHKRALRNLMADYLRRIIQDDVGGHDSSEDAAACMEL
MLWKVKEDTKGRKW
NT seq
3285 nt
NT seq
+upstream
nt +downstream
nt
atgctgcgctccgcgggttacttcagtggcttttcctgccctttcgatggcgcttcgggc
gccggctgcccgcggccccactgccagtataggcacgaggcggggcggagcgggcagcag
ccgctgagcgacgcccctgccatggagctaggtaaaagtatacaagaattggaaagaatc
aaaaaagcaattgagtcagtcaagactgaagttgaagaagggcagaagaaactctcgcag
tataatttgcaagatgaaatacctaaaaactctttgacatctaaaacaaatgatgtcaaa
ggaaataaaacttcctccgatgatgatggtctgtgtagctctcttacaaaagacaaatgt
cttgtagctccagtctcgaagtactctagcaaaggctgtcatttggtatccagtaaatat
gtcattgaccatagttgtccagcaactgaccttgaatatgatccactgctaaattattct
gcaggcctactcagctcttccataatgaaagagcaggaagatgagatacagcaatttaag
cgggtgaaaatgcctcttgatgattttcacatggagtctccaaaaatgtctccatgtgga
aatcagcatggatccccaaagaagagatcaagaagctattcacctatcaagcttgaaata
aagcttcaagaatctgatgatgatgatattctggttattgatgctccaccattgactgtc
actaagaaaccaagaataagtaggagctttaaaaactggaatagggaagaaaacaaacaa
gttgctgtaacacgtgcagaaaatctgcagaatagtaacgtagcagaagatgctcttaag
tctattgaggaaaaacgagcagaagttactgtaattctgcaaaaggatgacaacgcagat
gtaagcaaccctgaaaaatcactgaaaactccaccaaaaactcaaagtgcatatttgcct
gatgtgaaaattaatgctttgaagtctttaaataacctttgtgaacaaagaaaatcgttt
actgtctctaaggaaaataatatatcttcaatttctcatattaaggcacagatgcagaaa
gaaactttgaagaaagaagatccaaagagtgaaatatcagtgaaaacatctgttgaagaa
ttgagtactaataaatataaaaacacaccgacttgcaagagcgaggcccaaactagcctg
tattttgaagccagctcaaaagacaaaactgtgctaactgcacaagggagttgtaaaaaa
ttacctgtaaatatagggaaaattcagatcatacacgaaaatggagaaaatgaagtgttg
gaaaatgcactcattcatcccagcactcccttgaatttgggtgagaaaatttgtcatgat
gtagatctgttgactaaaaaccgtagtggagaaaggaatagtaatatgaacactaccatc
caagaaagtgaaataattatattagattcttcttcagaagaagagatggagtatagtgaa
gaggatactgaactctctgaatcagatgaccctatagaggaatgccggagaattttcaat
gagtttgttgaaagtgaagcacagaagcaggaaattgctaagcaggctcttggagctcat
gctgaagtagatacattggataccaagacaaatatggttcctgggcagaagaaaagaatt
gcgcacactgcaaaatttgatgtacagaccaacaaagaaatacttgtgccttttaaggca
cctcttccacagcaatcttgtcctaccagaatcctgcaggcacagcaacaggcagtgcag
ataacagctgcggttaaaagtggacaggcttttgttgctgcaacttctggacagaagaaa
actgtacctgtattgtcaactactcagattcaaaacgtaggaccaatggtatgtttaaat
ttgcttgaagttcaacctgttgcaaccagcagtggtcaactgaatgtattccttcaagga
aatgctgtaacagcaatgccatgcagaccttctaatatttcaataaaaaggattgctccc
atgcctattaaggtttctagtcggagaaggctttctataattccagaatctggatccaaa
gttccacatgacacaagacaacgatatgtcaacttttttgttgaagaatatttgaaagtt
tgtagaacagtaaatgaagcttttgataaggcattggtagaagaaaaagcaatttatgat
cgttgtggcagtaaaaatatgtatctgaacatagctgtgaacacccttaaaaagctgagg
gatcaaggtagtctctctccaaatgggcagtcttgtggtagcagatggactaatacaact
ggatctagaaaatcggaagagaagaatgatttttcagggattgttctctatagaattcta
aaaggctatgttctgactgaggaacaattgcatgagagtggctacccgcaaccaaatcct
gaaaaacctggcagtgctatattgggtaatggcattacaaaaacagctgtatctgatgct
tccaaaagagtatgttgtagatgtggagaaatatacactgttactgcttcaggaaagcac
attcgtaaagaagaatgcaactaccattctggtagagtactaagacaaaaagttcctggt
ggcttggaaacacggtatagctgttgtgaaggagtagttgggtctcctggatgccaggtt
gcaaagctccatgtccaggatggccgaaaggagaacctggatggctttgtgaagacattt
atcaaactaactccagctgatggaaatcatggtgtgtttgcactcgactgtgagatgtgt
tacacaacacaaggtctggaacttactagagtgacagtggttgattcaaacctacaggtt
gcctatgatacacttgttaaaccagataatgaaatcatagactataatactagattttct
ggagtgacagaagaggacttgaagaacacatcatcatctattcgggatgtgcaggcaata
ttgctaaacttgttcagtgcagatactattttaattggacacagcttagaaaatgattta
tttgctcttaagctgattcataacactgttgtggacacagcagtggtgtttcctcatcgg
ctaggcttgcctcataaaagagcacttagaaatctaatggctgattacctcagacgaatt
attcaagatgatgttggtggccatgattctagtgaagatgctgctgcttgtatggaactg
atgctttggaaagtaaaggaggatactaagggcagaaaatggtga
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