Trachemys scripta elegans (red-eared slider): 117879503
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Entry
117879503 CDS
T07347
Symbol
DDX4
Name
(RefSeq) probable ATP-dependent RNA helicase DDX4 isoform X1
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tst03036
]
117879503 (DDX4)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117879503 (DDX4)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Gene silencing
piRNA pathway
117879503 (DDX4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
P-loop_SecA
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
117879503
NCBI-ProteinID:
XP_034630631
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All DBs
Position
6:31871353..31974541
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AA seq
687 aa
AA seq
DB search
MGDEDWDTEIQDRVTSFVPDFQQLDNFSGRANDPSFSCSQSRNSADAGVGRNRSQHMRGG
FGIGRSFGNRGNKLEERRNSGFERESTEDGQSRALSRRGGFQEGSYSERLGTRRGVAGGF
RGGRIGFAQSQNNENEQRGQQSDSVFISRRGGFGGPTGDNDNNRSRGFGRKGGYRGYNEE
VIAGSGRSSWKSHDKTESGDNQGPKVTYVPPPPPDNEEAVFAHYQTGINFDKYDTILVEV
SGLDPPPAILTFEEANLCQTLNKNIAKAGYLKLTPVQKYSIPIILAGRDLMACAQTGSGK
TAAFLLPILAHMMKDGVTASHFREQQEPECIIVAPTRELINQIFLEARKFSYGTCIKPVV
IYGGTQTGHSIRQIMQGCNILCATPGRLMDIIGKEKIGLHKVRYLVLDEADRMLDMGFGP
EMKKLISCPGMPSKDRRQTLMFSATFPEEIQRLAGEFLKPEYLFVAVGQVGGACSDVQQT
ILQVSQYSKREKLVEILQSIRDERTMVFVETKKKADFIATFLCQEKIPTTSIHGDREQRE
REEALRDFRFGKCPVLVATSVAARGLDIEKVQHVINFDLPSTIDEYVHRIGRTGRCGNIG
KAISFFDSFSDSHIAQPLVKVLSDAQQEVPSWLEEIAFSAQGTGFSNPRGNIFASVDTRK
IYQGKDSMNTGGLTMSSTTGTADESWD
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgggagatgaggactgggacaccgagatccaggaccgcgtgacatccttcgtaccagac
ttccagcagctggataacttttctggaagagcaaatgacccctcatttagttgcagtcaa
agcagaaattcagcagatgctggtgtgggacgtaacagaagtcaacacatgcggggtggc
tttggtatcggaaggagttttgggaatagaggaaataaattggaagaaagaagaaactct
ggatttgagagagaatctactgaagatggccaatcaagagcgctttcaaggagaggaggt
ttccaggaaggaagctattcagaaagacttggcacacgaagaggtgttgcagggggtttc
agaggtggccgtataggatttgcacaaagtcaaaataatgaaaatgagcaacgaggacag
cagtctgatagcgtctttatctctaggagaggagggtttggaggtcctacaggtgataat
gacaataatagaagcagaggatttggacgcaaaggaggatacagaggttacaacgaagaa
gtaattgcaggttcaggaagaagttcttggaaatcacacgacaaaacagaaagtggtgat
aatcaaggtccaaaggtgacctatgtgcctccgcctccacctgacaatgaagaagctgtc
tttgcacactaccagacaggaattaattttgataaatatgacacaattcttgtggaagtg
tcaggacttgatcctccaccagcaatactgacttttgaagaagctaatctttgtcaaaca
ttaaacaagaacattgctaaagctggatatttgaaacttacgccagtgcagaagtatagt
attcctattatacttgcagggagagatttaatggcatgtgcccagacaggatctggaaaa
acggcagcttttcttttgccaattttggctcacatgatgaaagatggggtaactgccagt
cacttcagagagcagcaggaaccagaatgtattattgtagccccaactagagaactgata
aaccagatctttctggaagcaagaaagttttcatatggaacttgcataaagccagttgtg
atatatggaggtacgcaaacaggtcattcaattcgtcagataatgcaaggctgtaatata
ttgtgtgctaccccaggaaggcttatggacatcataggtaaagaaaagattggattgcat
aaagtgagatatttggtgttagatgaagccgaccgtatgctcgatatgggttttggtcca
gagatgaagaaattaatctcttgcccaggcatgccatcaaaagataggcgtcaaacacta
atgtttagtgccactttcccggaagaaattcaaaggctggctggagaatttttgaaacct
gaatacttatttgttgctgttggacaagtgggtggagcctgcagtgatgttcagcagacc
attcttcaagtttcccaatattccaagagagagaaactggttgaaattctacaaagcata
agagatgagcgaactatggtgtttgtggaaacaaagaaaaaagcagacttcattgcaacc
tttctttgtcaagaaaaaataccaaccaccagtattcatggtgatcgggaacagagagag
cgagaagaggctcttcgggactttcgctttggaaaatgtcctgttcttgttgctacttca
gtagcagcaaggggcctggatattgaaaaagttcaacatgttattaattttgatcttcct
tccactattgatgaatatgttcaccggattgggcgaactggacgctgtgggaacattgga
aaagcgatttctttctttgattctttttccgacagccacatagcgcaacctctggttaaa
gtgctttcagatgctcagcaggaagttccatcatggctggaagaaattgcatttagtgct
cagggaactggctttagcaatccaagaggaaatatctttgcatctgttgatactcgaaag
atttaccaaggcaaagacagtatgaacactggaggtcttactatgtcatctactacaggt
acagctgatgagtcgtgggattaa
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