Trachemys scripta elegans (red-eared slider): 117879647
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Entry
117879647 CDS
T07347
Symbol
SHOC1
Name
(RefSeq) protein shortage in chiasmata 1 ortholog
KO
K28108
shortage in chiasmata 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tst03036
]
117879647 (SHOC1)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Meiosis-specific proteins
Others
117879647 (SHOC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF5587
Macro
HMA
Motif
Other DBs
NCBI-GeneID:
117879647
NCBI-ProteinID:
XP_034630810
LinkDB
All DBs
Position
6:complement(115025949..115095363)
Genome browser
AA seq
1525 aa
AA seq
DB search
MLPVELESNKTTNFRQKVEIPSCLELKELLKLAPEIITDESRSENKIKDLTANITNEIEI
SKYCPTMEEVCFNQSRNPLECSEAVSYALYPQYEVEIPLTPPCRPQRSHVNSLHAGLQAE
PISPVGNSILLTESTKEYLECLVWQSEKYQNAVNSLLLEENQTVEPTFQHHSVTELKKML
SVHVEAPVFSPLKSDWWIHSGLNLVLPDSLEQLSTDLGSANSMFTTKVEVFSQITQFQLE
KWLEEKCSLTNQGLLSVSARHWDKTTDSHFSPEKKSPFSPLCLRAAPHVNIHDTNTSGEW
LTRQEKQHSETEGPMHFLYQEKKNKDLSDSLNCKEVSFEPNSSTKSQKTPSFEQSRQCDD
DSDLLSSFIMLRSKHVFIQNEEKNNVDRQKDALEIKVCPEVLKQDSPAVCKATLTEKTEQ
ENQGSISVEIQASESQCQAYHLLEATATPVLKELMHLGILAAVNWSFATVKFDHTRFFLK
QQEKVICDIFKQGKNSEKEILLFKHAALVHLLVTVRDLLLMCTLDTALGYLSKAKDIYTS
ILGSCLDNIWRQLEIVQYSRQKKNEISPKITQLRCQMFKWVQSNTDEENHKVLIITRMDS
DHEKAAITKTLSAVEGLKAMVLNPEKRGVLLEHHVISSLSRCSCVIVHNQHIGADFPWTL
FSLVVEYDYTENSCWNELCKNLNITYITFKTTLPETLVVGENFGCFPLEVQIPYVFLTSE
GLLNAPEILQLLESKYNITFVERSCSESLQLFGGTDRYVVITIDERTAIIIEPSVSSKDT
EESLTIPISKDVYEILTRRESCLRDLIEKKFGCMSLLKSIRCPLEVYKKSLKEGIEISVW
VDDMTRHNADALVNAANEHLDHIGGLALALVKAGGPEIKQESKRYIDRHGTLTTGQIVVT
GGGRLSCKKVIHTVGPRWSANESERCCHMLETAIINVLKYVNAPENNIKSVAIPAVSSGI
FGFPLDLCAHVIVRTIKNFVELAPLFGWFKEIHLVNITEPTVAAMKKACEELLGRSDINS
LQETPPASANRLPDSITINGLCLHIIRGHIEDQQTAVIVNSVVMNDDLSRGNISRAILEK
AGLSLQKEFLFELQKLPPYCEKFILTKGYNLACKSVLHVVWSSQSSSDSRKGLKTVMSRC
LLKIQEYQLPSISFPAIGTGVLNLPNDEVADIMIDEVLSFAKEHPWKKTDVYFVIHPNDS
YVYKAFQTKFESAKNKLIEDMECHKTDDLGSRSDRQAEIQNKKTGPAIELIGNCYEKLEA
AKIWIEDIMQVQESHLIVIENNHIFNLSKREHAELSHLQRFGVSILEEVVGGKARLEIQG
PPGAIIDAVFVIENLLCYVQENNRTKQEELPQSEGRLETNYPPEKLQDKTRDTKMYDQIS
EADLNCQEFKDREKQFEKTGLRALKQSSKNFQGEFGGLAYSCPEAQVEETLWSEYPSSHA
LDSFALDLRLCDSVANPDEYSSLNFHQIAGEFSGKRRPSASLSNLTEKDVLTGLGFAQVP
QLKKRRLTFEKAPGRSDGQTRLKFF
NT seq
4578 nt
NT seq
+upstream
nt +downstream
nt
atgctgcctgttgagttagaatccaacaagacaacaaacttcagacagaaagttgagatt
ccatcgtgcttggaactgaaagagttgttaaaattagcaccagaaattataacagatgaa
agtaggagtgaaaataaaatcaaagatcttactgcaaatattacaaatgaaatagagatt
tcaaaatactgtcccacaatggaagaggtttgtttcaatcaaagcagaaatccactggaa
tgcagtgaggcagttagttacgctttatatcctcaatatgaagtagaaataccactaact
ccgccatgcagaccacaaagatcacacgtgaattcacttcatgcaggacttcaggcagaa
cctatttctcctgttggtaacagtattctgcttacagagtcaactaaggagtatttagag
tgcctggtgtggcagtcagaaaaataccaaaatgctgtgaactctcttttgcttgaagag
aatcagaccgttgaacctacatttcaacatcattcagttacagaactgaaaaagatgttg
tctgtccatgtggaagctccagtgtttagcccattgaaatcagactggtggattcattca
ggactaaatctggtattaccagattctttggagcaactaagcactgatttgggtagtgca
aacagcatgtttactactaaagtggaagtattctcacaaattacacaatttcagttagaa
aagtggcttgaagagaagtgttcccttactaaccaaggactgctttctgtcagtgcacgt
cactgggacaaaacaacagattctcatttctcacctgaaaagaagagcccattctctcca
ttatgtttgagagctgcacctcatgttaacatacatgatacaaatacatctggtgaatgg
ctaacaagacaggaaaaacagcacagtgagacagaaggaccaatgcatttcttatatcaa
gaaaagaaaaacaaagatttgtctgactcacttaactgtaaagaagtatcttttgaacca
aacagctcaacaaaaagccagaagactccatcattcgaacagtctaggcaatgtgatgat
gattctgaccttctgagcagttttatcatgctaaggtctaaacacgtgttcatccaaaat
gaggaaaaaaataatgtggataggcagaaagatgcactggaaattaaagtgtgtccagaa
gttcttaaacaagacagtcctgctgtttgtaaggctacattgacagagaaaacagaacag
gagaatcaaggcagcatctcagtcgaaattcaagcatcagaaagccagtgccaggcatac
catctgttagaagcaacagccactcctgttctaaaagagttgatgcatcttggcatactt
gctgcagtgaattggagctttgccacggttaaatttgatcacactagatttttcttaaaa
cagcaggagaaagtgatctgtgatatttttaaacaaggtaaaaatagtgagaaagagatt
ctgttgttcaaacatgctgctctggtgcatctgttggtaacagttcgagacctcctatta
atgtgtaccttggacacagcattagggtatttgtccaaggcaaaggatatctatacaagc
atcttaggttcttgtttggataatatttggaggcagctggagattgtacagtatagcagg
cagaaaaagaatgaaatcagtcccaaaataacacagcttcggtgtcagatgttcaagtgg
gtgcagagtaatacagatgaagagaatcataaggtactaatcataacaagaatggactct
gatcatgaaaaagctgccatcactaaaacccttagtgcagtagaaggtttaaaagccatg
gttttgaatcctgagaaaagaggagttttgttagagcaccatgtcataagcagtttgagt
agatgttcctgcgttattgtacataatcagcacattggagctgactttccatggactctt
ttctcattagtggtggagtatgattatacagagaactcctgctggaatgagctgtgcaaa
aatttgaatattacttacataacttttaaaaccactcttccagaaacacttgtagtgggt
gaaaattttggctgcttccctctggaggtgcagattccgtatgtgtttctgacatctgaa
ggacttcttaacgcaccggaaatccttcaacttctagaatccaagtacaatattactttt
gttgagagaagttgcagtgaatcattacagctttttggaggtacagatcgatatgtcgtg
ataacaatagatgaacgcactgccataattattgagccctcagtgtccagcaaggataca
gaggagagcttaacaattcccatcagtaaggatgtttatgaaatccttacgagaagagag
agctgtctacgtgacctcattgaaaagaagtttggttgcatgtctctccttaagagtata
agatgtccccttgaagtatacaagaaaagcctgaaggaaggaattgagatatctgtttgg
gtggatgatatgacaagacataatgctgatgctttggtgaatgcagccaatgaacatctg
gaccatattggaggccttgctcttgccctggtgaaagctggtgggccagaaattaagcaa
gagagtaaacgttatattgatcgccatggaacactcaccactggccaaatagtagtgaca
ggtggaggcaggctttcttgtaagaaagttatccacacagtaggtccaagatggtctgca
aatgaaagtgagagatgttgtcacatgcttgagacagctattataaatgtcctgaaatat
gttaatgctccggagaataatataaagtctgttgcaatccctgcagtgagctcaggaatt
tttggcttcccactagatttatgtgctcatgtgatcgtacggactataaagaattttgtt
gagctagctccattatttggctggttcaaagaaatccacttggtgaacattactgagccc
acagttgcagcaatgaaaaaggcctgtgaagagttgctgggcaggagtgacatcaactca
cttcaggagactccaccagcttcagcaaaccggcttccagattccatcacaatcaatggt
ctttgcctacacatcataagaggacacattgaagatcagcaaactgcagtcattgttaat
tctgtggtcatgaatgatgatctctcaagaggaaacatttcaagagcaattctggaaaaa
gcaggcctatctcttcagaaggaatttctgtttgagttacaaaaacttcctccatattgt
gagaaattcatattgacaaaaggatacaatcttgcctgcaagtctgtgctccacgtagta
tggtcctcacaaagcagcagtgattcgcgcaagggactaaaaacggtaatgtcaagatgt
ttgcttaagattcaggagtatcagcttccctcaatttccttccctgcaattgggactgga
gtgttaaatttgccaaatgatgaagtggcagatattatgattgatgaagttttaagcttt
gcgaaggaacatccttggaagaagacagatgtgtattttgtgatccatccaaatgacagt
tatgtctataaggctttccaaaccaagtttgagtcagcaaaaaacaagctgatagaagac
atggaatgccacaaaactgatgatttggggtcacgctccgacagacaagctgaaatacag
aataaaaaaactggaccagccattgaacttattggcaactgctatgaaaaactggaagca
gcaaaaatatggattgaagacataatgcaagtccaggaaagtcaccttatcgttatagaa
aacaatcacatttttaaccttagcaaaagagagcatgcagaactttctcatctccagcgt
ttcggtgtatccatattggaagaagtggttggtggaaaagcaagattagagattcaaggt
cctcctggtgccataattgatgcagtgtttgtgatcgaaaacttactgtgttatgtgcaa
gagaataatagaaccaaacaagaggaactgccacagtcagagggccgactggaaactaat
tatcctccagaaaaactccaagacaagacaagggataccaaaatgtatgatcagatctca
gaagcagacttaaactgtcaggaattcaaggaccgagaaaagcagtttgaaaaaactggg
cttcgtgctctcaagcaaagctctaagaattttcaaggagaatttggaggcttggcatat
agctgtccagaagctcaggttgaggagacactttggagtgaatatccatccagccatgca
ttggattcatttgcacttgacctcagactctgtgattcagttgcaaatccagatgaatac
agtagtttgaattttcaccaaatagctggagagttttcaggaaagagaaggcccagtgca
tcattatcaaacttaacagaaaaagatgttttaacaggtttaggctttgcacaagtacca
cagctcaaaaaaaggcgactaacatttgaaaaagcccctggaagaagtgatgggcaaact
cgtcttaaattcttttga
DBGET
integrated database retrieval system
