Trachemys scripta elegans (red-eared slider): 117879732
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Entry
117879732 CDS
T07347
Symbol
TAF5
Name
(RefSeq) transcription initiation factor TFIID subunit 5
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
117879732 (TAF5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117879732 (TAF5)
03036 Chromosome and associated proteins [BR:
tst03036
]
117879732 (TAF5)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
117879732 (TAF5)
Coactivators
SAGA/TFTC/STAGA complex
117879732 (TAF5)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
117879732 (TAF5)
STAGA complex
117879732 (TAF5)
TFTC complex
117879732 (TAF5)
SAGA complex
117879732 (TAF5)
SLIK complex
117879732 (TAF5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WDR55
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
ANAPC4_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_Vps41
Beta-prop_EIPR1
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_SPT8
Beta-prop_DCAF12
WD_LRWD1
Beta-prop_Nup120_160
PEP5_VPS11_N
CDK5RAP3
WD40_like
eIF2A
RAB3GAP2_N
LisH_TPL
VID27
Motif
Other DBs
NCBI-GeneID:
117879732
NCBI-ProteinID:
XP_034630867
LinkDB
All DBs
Position
7:complement(122299931..122324853)
Genome browser
AA seq
784 aa
AA seq
DB search
MAALPEEPAEVVVKPDPDGGVPPPPPPAPPPAAPPTTAPAEGEAAGAPGSGGEAAPPKPA
PPGPAASPAPTDRQTLLAVLQFLRRNNLHESEDILRREARLLGEEVAAAALSPAGPGAQG
TPGGETDASGGEALLSRVAAASGAAGGGVAAGASAAPGGAAVVAPPPGKVGGGVPVEDQP
DVSAVLSAYKQQGDPALYEEYYSGLKHFIECALDCHRAELSQLFYPLFVHMYLELVYNQH
ENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQL
LKRHLQEKQNNQIWNIVQEHLYIDIFDGMPRSKQQIDAMVGSLAGEAKREANKAKVFFGL
LKEPEIEVPLDDEDEEGENEEGKPKKKKPKRESMGSKSKKQDPNAPPQTRIPLPELKDSD
KLDKIMNMKEATKRVRLGPECLPSICFYTFLNAYQGLTAVDVTDDSSMIVGGFADSTVRV
WSVTPKKLRSVKSAADLSLIDKESDDVLERIMDEKTASELKILYGHSGPVYGTSFSPDRN
YLLSCSEDGTVRLWSLQTFTCLVGYKGHNYPVWDTQFSPYGYYFVSGGHDRVARLWATDH
YQPLRIFAGHLADVTCTRFHPNSNYIATGSADRTVRLWDVLNGNCVRIFTGHKGPIHSLA
FSPNGRFLATGATDGRVLLWDIGHGLMVGELKGHTDTVYALRFSRDGEILASGSMDNTVR
LWDAVKVFEDLETDDFTTATGHINLPENSQDLLLGTYMTKSTPVIHLHFTRRNLLLASGA
YSPQ
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggcggctctacctgaggagccggctgaagtggtggtgaagccggacccggacgggggt
gtcccgccgccgccccctccggcgcccccgcccgccgctccccccaccacggcgccggcg
gagggggaggcggcgggggccccggggagcggaggggaggccgctccccccaagccggcc
cccccgggtccggccgcctcccccgcccccacggaccggcagaccctcctggccgtgctc
cagttcctgcgtcgcaacaacctccacgagtccgaggacatcctgcgccgggaggcccgg
ctgctgggggaggaggtggccgcggctgccctcagccccgcgggacccggcgcccagggg
accccgggtggggagacagacgccagcgggggcgaggcgctgctcagccgggtcgccgcc
gcctcgggagcggccggagggggcgtcgctgctggtgcctctgcagcccccggcggcgcc
gctgtagtcgcgccgccgccagggaaagttggaggaggtgttcctgtagaagatcagcca
gatgtgagtgcagtgttgtctgcctacaaacagcagggggacccagcgctgtacgaggaa
tactacagtggactgaagcactttattgagtgtgccctagactgtcatcgggctgaatta
tcccagttgttttatcctctctttgtgcatatgtatttggaattggtctacaaccagcat
gagaatgaagcaaagtctttctttgaaaagtttcatggggatcaagagtgttattaccag
gatgacctgcgtgtattatctagtttaaccaaaaaggagcacatgaaagggaacgagacc
atgctggatttccgaacaagcaagtttgtgctgcgcatttctcgtgactcttaccaactc
ttgaagagacatcttcaggaaaaacagaacaatcaaatctggaacattgttcaggagcat
ctgtacattgatatctttgatggaatgcctcgcagtaaacaacagatagatgctatggtg
ggaagcttggcaggggaagctaaaagggaggctaataaagcaaaggttttctttggctta
ttaaaagaaccagagattgaggtgcctttggatgatgaagatgaagagggggagaatgag
gaaggaaaaccaaaaaagaaaaaacctaaaagagagagcatgggatcaaaaagtaaaaag
caagaccctaatgctcctccacaaaccagaattcctcttcctgaactgaaagactcggac
aagctggataaaataatgaatatgaaggaagccacaaaacgtgtgcgtcttggtccagaa
tgtttgccttccatctgtttctacacattccttaatgcctaccagggtcttactgcagtg
gatgtcactgatgactctagcatgattgtaggaggctttgctgactccactgtaagagta
tggtctgtgacaccaaaaaagctacgcagcgtgaaatcagcagcagatctcagtctcata
gacaaagaatcagatgatgtcttggagaggatcatggatgagaaaacagcaagcgagctg
aagattttatatggtcacagcggacctgtctatggtaccagcttcagtcctgataggaac
tacctcttgtcctgttcagaggatggcactgtcagattgtggagccttcaaacattcact
tgcctcgtgggatataaaggacacaactatccagtgtgggatacacagttctctccctat
ggatattactttgtatcaggtggacatgacagagtggctcgtctgtgggctacggatcac
tatcagcctttacgaatatttgctggccatcttgctgatgtcacatgtacccggtttcac
cccaactccaactatattgccacgggctcagcagacaggactgtacgactctgggatgtt
ctgaacgggaactgtgtaagaatcttcactggacataagggaccaattcattcattggca
ttttctcctaatggacgattcctggccactggagcaacggatggaagagtgcttctgtgg
gatattggccatggtttgatggtgggagagttgaaagggcacactgatacagtctatgca
ctcagattcagtagagatggggaaattttagcatcaggttcaatggataacacagtccgg
ctgtgggatgctgtgaaagtatttgaagacttagaaactgatgattttactacagccact
ggacatataaatctgcctgaaaactcacaggacttgctgttgggtacatacatgaccaaa
tcaactccagtcatacacctccattttacccgcagaaacttgctactagcttcaggagca
tatagtccacaataa
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integrated database retrieval system
