Trachemys scripta elegans (red-eared slider): 117879839
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Entry
117879839 CDS
T07347
Symbol
CNTN4
Name
(RefSeq) contactin-4 isoform X1
KO
K06762
contactin 4
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117879839 (CNTN4)
Cell adhesion molecules [BR:
tst04515
]
Immunoglobulin superfamily
Contactins
117879839 (CNTN4)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_5
Sp38
Ig_C17orf99
V-set_CD47
C2-set_2
Pur_ac_phosph_N
Tissue_fac
Motif
Other DBs
NCBI-GeneID:
117879839
NCBI-ProteinID:
XP_034631154
LinkDB
All DBs
Position
7:13598051..14240072
Genome browser
AA seq
1065 aa
AA seq
DB search
MRLLWELLVLQSFMLCLADDNTLHGPVFIQEPNNVIFPLDSEEKKVKLSCEVKGNPKPTI
RWKLNGTSVDVGMDYRYSVVGGSLLINNPNKTQDIGMYQCIATNSFGTIVSREAKLQFAY
LENFKTRTRSTVSVRQGQGMVLLCGPPPHSGELTYAWIFNEYPSFVHQDNRRFVSQETGN
LYIAKVETSDVGNYTCVVTNTVTNNKVLGPPTPLILRNDGVMGEYEPKIEVQVPETVPSA
KGTTVKLECFALGNPVPTISWRRADGKQIPRKARRQKSSGVLEIPNFQQEDAGLYECVAE
NVRGKNMARGQLTFYAPPNWIQKISDAHKAIEESIFWECKANGRPKPSYSWLKDGEPLIP
RDRIQIEHGALTITNVNLSDAGMYQCVAENRHGVIFTSAELTVIALGPDFSKTLLKRLTL
VKVGGEVIIECKPKASPRPTYTWKKGKEILRENERINIMDDGSLRIVNVTKADAGSYSCV
ATNHFGTASSTGSLVVKDPTRVVVPPSSTDVTVGESIVLPCQVSHDHSLDIMFTWSFNGH
LIDFEKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTTVDQLSATADLIVRGPPG
PPEAVTIDEITDTTAQLSWRPGADNHSPITMYVIQARTPFSVGWQAVNTVPDIIDGKTFT
ATVVGLNPWVEYEFRAVAANLIGIGEPSRPSEKRRTEEALPEITPANVSGGGGSKSELVI
TWETVPEELQNGGGFGYVVAFRPLGTVSWMQTVVASSDASRYVFRNESLPPFTPYEVKVG
VYNNKGEGSFSPVTVVYSAEEEPTRAPTSIFAKSLSASDIEVYWASPRENQSKGRIQGYE
VRCWRHEDKEENARKIRTIGNRTSTKITNLKGNALYHLAVKAYNTAGTGPSSATVNVTTK
KPPPSQPPGNIIWNSSDSKIILNWDQVKALDNESEVKGYKVLYRWNRQSSTSVIETNKTS
VELSLPFDEDYIIEIKPFSDGGDGSSSEQIRIPKISSKNVVIVLVFPAHGAWILNGSRAN
IFRWHPVFCTLKLSCWGHRGSLCICRISVAAPKKGFVQANWSVQS
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaggttgctatgggaactgctcgtgctgcaatcattcatgttgtgccttgcagatgac
aacacgctgcatgggccagttttcattcaggaaccaaacaatgtgatttttccactggat
tctgaggaaaagaaagtgaagttgagctgtgaagtaaagggaaatcctaaaccaactatc
aggtggaagttaaatggaaccagtgttgacgtcggtatggattaccgctacagtgtagtg
ggaggcagtttgttgatcaataatcccaataaaacccaagatattggaatgtaccagtgc
atagcaacaaactcatttggaaccattgttagcagagaggcaaaacttcagtttgcttac
cttgaaaacttcaagacaagaacaagaagtacagtgtcagtccgacagggtcagggaatg
gtactgctgtgtggaccaccaccacattctggagaactgacttatgcatggatcttcaat
gaatacccatcatttgtgcaccaggataatcgtcgctttgtttctcaagagactgggaat
ttgtacatagcaaaggtggaaacatcggatgtgggcaactatacatgcgtggtgacaaac
actgtaacaaataataaagtgctgggccccccaactcctttgatactgaggaatgatgga
gtgatgggtgaatatgagccaaaaatagaagtgcaggtcccagaaactgttccatctgca
aaaggaacaactgtgaaactggaatgctttgccttgggaaacccagttcctactattagt
tggagaagagcagatggtaaacaaatacccaggaaagccaggagacaaaaatcgagtgga
gttcttgaaatcccaaactttcagcaggaagatgctggtctatacgagtgtgtggctgaa
aacgtgagaggaaagaacatggcacgagggcagcttacgttttatgcaccacctaactgg
attcagaaaataagtgatgcgcacaaagctatagaagaaagcatcttttgggagtgtaaa
gcaaatgggagaccaaagccttcatacagctggctaaaggatggtgaaccattgatacct
cgggacagaattcagatagaacatggagcacttacaataacaaatgtgaatctgtcagat
gcaggcatgtatcagtgtgtagcagaaaacagacatggagtcattttcaccagtgcggag
ttgactgtaattgctttgggtccagacttttccaaaaccctcttgaaaagattaactctt
gttaaagtgggcggtgaagtaatcatagagtgtaagccaaaagcttcccccaggcctact
tatacttggaagaaaggaaaagagatcctaagagaaaacgagagaatcaatattatggat
gatggaagcctccgaattgtcaatgtcactaaggcagatgctggaagttattcctgtgta
gcaacaaaccattttggtacagcgagcagcactggaagtttggtggtgaaagatccaaca
cgggttgtggtgccaccttccagcacggatgtcactgttggagaaagtattgtcctgcct
tgccaggtatctcatgatcactcgctagatattatgtttacttggtcatttaatggacac
ctgatagactttgagaaagacggggatcactttgaaagagttggagggcaggattcagct
ggtgatttgatgatcagaagcatccagctgaagcatgctgggaaatacgtctgcatggtg
caaacaactgtggaccagctatcggctactgcagacctgattgtaagaggtccaccaggc
ccacctgaagccgtgacaatagatgaaatcactgacactacagctcagttatcctggagg
ccaggagcagataatcacagccccattactatgtatgtaattcaagcaaggaccccattt
tcggtgggatggcaagccgtgaacacagttccagatatcattgatggcaagacattcact
gcaaccgtggtgggattaaacccttgggttgaatatgaattccgagcagttgcagccaac
ctcattgggattggggaaccaagcagaccctcagagaaaagaagaactgaagaagctctt
cctgaaatcaccccggctaatgtcagtggaggtggagggagcaagtcggagctggtcatt
acctgggagacagtgcctgaagaattacagaacggaggtggcttcggttacgtggtggca
ttccgacccttgggcacagtgagctggatgcagactgtagtagcttcttctgatgcctcc
agatacgtgtttcgaaatgagagcttgccgccattcacgccctatgaagttaaagtgggc
gtgtacaacaataaaggggaaggttcttttagccctgtgacagtcgtatattctgcagaa
gaagaacccaccagagctccaaccagcatctttgccaaaagcctttctgcttcggacatt
gaagtttattgggcctctccacgtgagaatcagagtaaaggaaggatacagggttatgag
gttagatgttggagacatgaagataaggaagaaaatgctagaaaaatcaggactattggt
aatcgaacatctacaaaaatcactaatctgaaaggcaatgcattatatcatttagccgtc
aaggcatacaacaccgcaggaacaggaccctccagtgctacagtcaatgtcactaccaaa
aagccaccaccgagtcaacctcctggaaacatcatatggaattcatctgactccaagatt
atactgaactgggatcaagttaaagcactggataatgaatcggaagtgaaaggatacaaa
gttttatacagatggaacagacagagtagcacatctgtaattgaaacgaataaaacatct
gtcgagctttctttgccttttgatgaagattacatcatagaaataaagccatttagtgat
ggaggcgatggtagcagcagcgaacaaatccgaattccaaagatatcaagtaagaatgtt
gtcattgtgcttgtgtttccagcccacggagcatggattcttaatggatcaagggccaac
attttcagatggcatcccgttttttgcacactaaaattgagctgttgggggcaccgtggc
tcactttgcatatgcagaatatcagttgcagccccaaagaaaggttttgtgcaagcaaac
tggagcgttcaatcataa
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integrated database retrieval system
