Trachemys scripta elegans (red-eared slider): 117879906
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Entry
117879906 CDS
T07347
Symbol
CNTN6
Name
(RefSeq) contactin-6 isoform X1
KO
K06761
contactin 3/4/5/6
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117879906 (CNTN6)
00537 Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
tst00537
]
117879906 (CNTN6)
Cell adhesion molecules [BR:
tst04515
]
Immunoglobulin superfamily
Contactins
117879906 (CNTN6)
Glycosylphosphatidylinositol (GPI)-anchored proteins [BR:
tst00537
]
Others
117879906 (CNTN6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ig_3
I-set
ig
Ig_2
fn3
V-set
Ig_5
Ig_DSCAM-DSCAML_C
Pur_ac_phosph_N
C2-set_2
V-set_CD47
Tissue_fac
Herpes_gE_N
Motif
Other DBs
NCBI-GeneID:
117879906
NCBI-ProteinID:
XP_034631332
LinkDB
All DBs
Position
7:13001260..13221834
Genome browser
AA seq
1028 aa
AA seq
DB search
MMLLWKLVILLPLLRCNTEEDTLHSPIFIQEPYDITYSIGSEDPEILLNCTAKGYPLPYY
RWKQNGTDIDLTMSYHYRLVGGSLAINNPHTKQDIGTYQCLATNSFGTILSRKAKLQFAY
LGNFETKTRSTVSVREGQGVVLLCGPPPHYGDLSYAWIFNDNPLYVQEDSRRFVSQETGN
LYIAKVELSDVGNYTCIVTNAKSEQSVRGPPTPLILRSDGVMGEYEPKIEVRFPETTYAV
KGSSVKLECFALGNPVPSISWKRSDGHPLARKIKHYKSKGVLEIPDFQQEDEGFYECIAG
NIRGRNIARGQLIIYALPEWDKKIQNAYLSLYDSLFWECKASGKPSPSYSWLKNGQPLMP
EERIQIENGTLTITMLNVSDSGLYQCVAENKYNTIYANAELRVIASAPDFSKNPVKQMSV
AQVGGEVTIECKPNASPRAVINWKKGTNVLRQNKRIFMLEDGSLKIYNITKTDAGVYTCI
AMNQFGVARNSGNLIVKERTVITVPPSKMDVTVGESIVLPCQVSHDPSAEVVFTWSFNGD
VIDFKRGVNHFERIGGESVGDLMIRNIQLNHSGKYVCTVQTTIDSLSATADVIVRGPPGP
PQDVRVEHISSTTALLCWRPGTDNNSPVQIYGVQTRTPFSVGWQAVSTVPEVLNGRTYSA
TVTGLNPWVEYEFRVVAGNNIGIGEPSRPSELLRTKASIPLVAPTNVSGGGGSRSELVIT
WESVPEELQNGKGFGYIIMFRPLGSTSWTKAVVASVEASKYVYRNESITPLSPFEVKVGV
YNNEGEGTLSSISIVYSGEDEPQIAPMRVSVQSFSASEVEVSWNAIAWNRHTGRVLGYEV
LYWTDDSKETAAGKVRVSGNVTAKNITGLKANTIYFATIRAYNTAGTGPSSTPVNITTKK
SPPSQPPANIAWKLTNSKICLNWEHVKTMENESEVLGYKISYRQTRQSKTHILETNNTSA
ELLVPFEEDYLIEIRTVSDGGDGSSSEEIRIPKMSSLNSRGTKSFQLVVHVVTNGIMILS
CILTFSAL
NT seq
3087 nt
NT seq
+upstream
nt +downstream
nt
atgatgttgctatggaaactagtcattctgctgccactcctgagatgcaacacagaggaa
gatactcttcatagtcctatttttatccaagagccatatgacatcacttattctattggt
tcagaggatccagaaatactgctgaattgtacagcaaaaggatatccattgccatactac
aggtggaagcaaaatggcacagatattgatcttaccatgagttatcactacaggttggtt
ggaggcagcttggcaatcaataacccacatacaaaacaggatattggaacataccagtgt
ttggctacaaattcatttggaacaattctgagcaggaaggcaaagcttcaatttgcatat
cttggaaattttgaaaccaaaacaagaagcaccgtctcagtcagagaaggacaaggagtg
gttttgctttgtggtcctccaccacactatggagacctttcctatgcttggatcttcaat
gataaccccttgtatgttcaggaggatagtcgtcgatttgtctcccaagagacaggaaat
ctatacatcgccaaagtagagctatctgatgtgggcaattatacctgtattgtaactaat
gccaaatcagaacaaagtgttcggggcccacccactccactcatcctccgtagcgatggt
gtgatgggagagtatgaaccaaagattgaagtacgctttccagaaacaacatacgcagtg
aagggttcatctgttaaactggaatgctttgcccttggaaatccagttcccagtattagc
tggaagaggagtgatggacacccattggcaaggaaaattaaacactacaaatccaaagga
gtccttgaaatcccagattttcagcaggaagatgaaggcttttatgaatgtattgcaggg
aacattagaggaagaaacattgcaagaggtcaactaataatctacgcactccctgaatgg
gataaaaaaatccaaaatgcctatctgtctctctatgacagcttgttttgggaatgtaag
gcaagtggaaaaccaagtccttcctacagttggttaaaaaatggccaaccccttatgcca
gaggagagaattcaaatagaaaatggaactcttaccataactatgctgaatgtgtcagat
tctggcctctatcagtgtgttgcggaaaacaaatacaatacaatttacgccaatgctgag
ttaagagtgatagcttcagccccagatttttccaaaaatcctgtgaaacaaatgtcagtt
gctcaagttgggggtgaagttaccattgaatgtaaaccaaatgcttctccccgggcagtt
atcaactggaaaaagggcaccaatgttctgcgacaaaacaaaaggatctttatgctagag
gatggcagtctcaagatatataatattaccaaaacagatgcaggagtgtacacttgtata
gcaatgaatcaattcggagttgccaggaattcaggaaacctgattgtgaaagagaggact
gtaattactgttccaccttctaaaatggatgttacagttggagagagtatagtcctacca
tgtcaggtgtctcatgacccctccgctgaggttgtgttcacatggtcattcaatggagat
gtgatagattttaaaagaggagtgaatcattttgaaagaattggaggagaatctgttggg
gatttgatgataagaaatattcagctaaatcattccgggaaatatgtttgcacggtacaa
acaaccatagacagtctatctgcaacagcagacgtaattgtaagaggccctccaggtccc
ccacaagatgttagagtcgaacacatttctagcactactgccctgctatgctggagacca
ggaacagataataatagtccagtccagatctacggtgttcagacaaggactcctttttca
gttggatggcaggcagtttcaaccgttcctgaagttctcaatggcagaacctattcagca
acagtgactggtttaaacccttgggttgaatatgaattccgtgtggttgctggcaataac
atcgggattggggagccaagcagaccatcagagctgctaagaacgaaagcatcaattcct
ctagtggcaccaacaaatgtgagcggaggtggagggagtcgctctgagcttgtcatcaca
tgggagtcagttcctgaagaattacaaaatgggaaaggttttggctacatcattatgttt
cggcctcttggttcaacaagctggacgaaggcagtagtggcttcagtagaagcatcgaag
tatgtctacagaaatgaaagtattacacctctctccccttttgaagttaaagtgggtgtc
tacaataatgaaggagaagggactctgagctccatatctattgtctactcgggagaagat
gagccacagattgcaccaatgagggtttctgtgcagagcttttcagcttccgaagttgaa
gtatcttggaatgctattgcatggaacaggcatacaggaagggtacttggctatgaggtt
ttatactggacagatgattccaaggaaactgcagctggtaaagttagagtcagtggaaat
gtaacagcaaaaaacatcacaggactaaaggccaacacaatatattttgcaacaataaga
gcttacaatacagctgggacaggcccatccagcactccagtcaacatcactactaagaag
tcaccaccaagtcaaccaccagcaaacattgcatggaaactgacaaattcaaaaatatgc
ttgaattgggaacatgtaaaaacaatggaaaatgaatcagaggtgttaggctacaaaatt
tcatacaggcaaactagacaaagcaaaactcatatactggagacaaataacacctcagct
gagcttctggtaccatttgaagaagattatctcatagaaataagaacagtcagtgatggt
ggggatggcagcagtagtgaggaaattaggattccaaaaatgtcaagtttaaactccaga
ggaacaaaatcattccagttggtagtccatgtggtaacaaatgggattatgattctgagt
tgcattcttactttctcagctctttga
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integrated database retrieval system
