Trachemys scripta elegans (red-eared slider): 117880161
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Entry
117880161 CDS
T07347
Symbol
PDLIM1
Name
(RefSeq) PDZ and LIM domain protein 1 isoform X1
KO
K23353
PDZ and LIM domain protein 1/2/3/4
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117880161 (PDLIM1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tst04990
]
117880161 (PDLIM1)
Domain-containing proteins not elsewhere classified [BR:
tst04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
117880161 (PDLIM1)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DUF4749
PDZ
LIM
PDZ_6
PDZ_2
Motif
Other DBs
NCBI-GeneID:
117880161
NCBI-ProteinID:
XP_034631883
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Position
7:complement(53241303..53329379)
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AA seq
429 aa
AA seq
DB search
MSSHRVALQGPGPWGFRLVGGKDFEQPLTISRVTPGSKAAIANLCIGDVIMAIDGENTDN
MTHLEAQNKIKSCIDEITLTVGRTESKVWSPLVTEEGKPNPYKMNLASQPQEIRHIGSAH
NRSAMPFTAATASSTAPKVITAQYNSPAGLYSSENIQTFNSAVESKSSGDAQDPCKPRLS
PPGFQAPFATVYNPLQPHTSLPPLQRRHSTSSIPSQVRVGPEQLKQAAQICPNSPVEVEV
PGLKVAHMQFNSPLQLYSQRNILDTLQGQISSVSPAFPSLEQHNQPSNNLVIDKESEVYK
MLQETEDPKEPPRQSASFLVLQEILESEGDPNKPSGFRSVKPPMTKVASSIGNAQKLPIC
DKCGSGIVGAFVKLRDKQRHPECYVCSDCGTNLKQKGHFFVEDCIYCETHARERVTPPEG
YEVVTVFPK
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atgagcagccaccgcgtcgccctgcagggcccgggcccctggggcttccgcctggtgggg
ggcaaggacttcgagcagccgctcaccatctctcgggtgactcctggcagcaaagctgca
atagccaatttatgtataggagatgtcatcatggcaattgatggggagaacacagataac
atgacacacttagaagcacagaacaaaatcaagagctgcatagatgagataactctgaca
gttggcagaacggaatccaaagtctggtcccctctggtgacagaggagggaaagcccaat
ccatacaagatgaatctagcatctcaaccccaggaaataaggcacataggaagcgcacac
aaccggagtgctatgccattcactgctgccaccgcttccagcactgcccccaaagtgatc
actgcccagtacaacagtcccgcaggcctgtactcctcagaaaacatccagaccttcaac
agtgctgtggagtctaagtcatctggtgatgcccaggacccctgcaagccccgtttatcg
cctcctgggttccaggcaccttttgcaacggtctataatcctctccagccgcacacctcc
ttgcctccattgcaaaggaggcacagcacttcctccatcccaagccaagtgagagtgggg
cccgaacagctaaagcaagccgctcagatctgccccaacagccctgtggaagtggaggtg
ccgggactcaaagtggcgcacatgcaatttaattcccccttgcagctctattcccagaga
aacatcctggatactttacaagggcagatctcttccgttagccctgcttttcccagtttg
gagcaacataaccagccctccaataaccttgtcatagacaaggagtctgaggtttacaag
atgctccaggagactgaagacccaaaggaaccacccaggcaatctgcttcattcctggtg
ctacaagaaattttagaatctgaaggggatcccaataaaccttctggatttagaagtgtg
aaaccaccaatgacaaaagttgcctcatcgattggaaatgcccagaagctgcccatttgc
gataagtgtggatctggcattgtgggggcgttcgtgaaactgcgtgacaagcagcgccat
ccagaatgctatgtgtgcagcgactgcgggacaaacctcaagcagaaaggacacttcttt
gtggaagattgcatctactgcgagacgcatgcccgggagcgagtgaccccacccgaaggc
tatgaggtggtcaccgtctttccaaagtga
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