Trachemys scripta elegans (red-eared slider): 117880205
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Entry
117880205 CDS
T07347
Symbol
SHOC2
Name
(RefSeq) leucine-rich repeat protein SHOC-2
KO
K19613
leucine-rich repeat protein SHOC2
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
117880205 (SHOC2)
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Motif
Pfam:
LRR_8
LRR_14
LRR_4
LRR_LRWD1
LRR_9
LRR_5
LRR_NLRC4
Motif
Other DBs
NCBI-GeneID:
117880205
NCBI-ProteinID:
XP_034632032
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All DBs
Position
7:complement(117603480..117701943)
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AA seq
582 aa
AA seq
DB search
MSSNLGKEKDCKEKDPKVPLAKEREKESKASGGFGKESKEKEPKTKGKDAKDGKKDSSSA
QPGVAFSVDNTIKRPNPAPAARKKSSNAEVIKELNKCREENSMRLDLSKRSIHMLPSSIK
ELTQLTELYLYSNKLQSLPAEVGCLVNLMTLALSENSLTSLPDSLDNLKKLRMLDLRHNK
LREIPSVVYRLNSLATLYLRFNRITTVEKDIKSLSKLTMLSIRENKIKQLPAEIGELCNL
ITLDVAHNQLEHLPKEIGNCTQITNLDLQHNELLDLPETIGNLSSLSRLGLRYNRLSAIP
KSLAKCSELDELNLENNNISTLPEGLLSSLVNLTSLTLARNCFQSYPVGGPSQFSTIYSL
NMEHNRISKIPFGIFSRAKVLSKLNMKDNQLTSLPLDFGTWTSMVELNLATNQLTKIPED
VSGLVSLEVLILSNNLLKKLPHGIGNLRKIRELDLEENKLESLPNEIAYLKDLQKLVLTN
NQLTTLPRGIGHLINLTHLGLGENLLTHLPEEIGTLENLEELYLNDNPNLHSLPFELALC
SKLSIMSIENCPLSHLPPQIVAGGPSFIIQFLKMQGPYRAMV
NT seq
1749 nt
NT seq
+upstream
nt +downstream
nt
atgagtagtaatctaggaaaagaaaaggactgtaaagagaaggatccaaaagtcccattg
gcaaaggaacgggagaaggagtctaaggcctctggaggatttgggaaagaaagcaaagaa
aaggagcctaagaccaaagggaaagatgccaaagatggaaagaaggactccagtagtgca
cagcctggggtagctttttcagtagacaacacaataaaacgacctaatccagccccagct
gctcgcaaaaaatccagcaatgctgaggtgatcaaagagctaaataaatgccgagaagag
aattcaatgcgcttggacttgtccaagaggtctatacacatgcttccatcatctatcaaa
gagttgacacagttaacggaactttatttatacagtaacaaattgcagtctctacctgca
gaggtgggctgtcttgtgaatctgatgacactggctttaagtgagaactcgcttaccagt
ttgcctgactctcttgataacttgaagaaattgcgcatgcttgatctacggcataacaaa
cttagagaaattccgtcagtggtgtacaggctaaattctcttgccactctttatctacgc
tttaatcgtataactactgtggaaaaggatatcaaaagcttgtcaaaactcaccatgctt
agcatacgagagaacaaaatcaagcaactacctgctgaaattggtgagttgtgtaacctc
ataactctggatgtagcgcacaatcagcttgaacatcttccaaaggagattggaaattgc
acacaaatcaccaaccttgacttgcagcacaatgagcttttggacctaccagaaaccata
ggaaatttgtccagtctaagtcgtcttggcctaaggtacaatagactgtcggcaatcccc
aagtctttagcaaaatgtagtgaacttgatgaactgaatttggagaacaacaacatttct
actttaccagagggtcttttatcgagtcttgtgaacctgactagtttaacattggccagg
aactgcttccagtcatatccagtgggtggcccatcacagttctccacaatctactctctc
aacatggaacacaaccgcatcagcaaaatcccgtttggaattttctctagagctaaagtg
ttaagtaagctgaacatgaaggacaatcagctaacctcgctccccttggactttgggact
tggaccagcatggtggaactgaatttagccactaatcagctcacaaaaattcctgaggat
gtgtctgggctagtttcccttgaggttcttatcttgtcaaataatcttctgaagaaactt
ccccatggcattggaaacctacggaaaataagagagttggatttagaggagaacaaactg
gaatccttgccaaatgaaatcgcttaccttaaggatctgcagaaattggtcttgactaat
aatcagttgaccacccttccaagaggaattggtcacctcatcaatctaacacatcttggg
ctaggagagaatcttctcacacaccttcctgaagaaattggtacactggagaatctggaa
gaactgtatttgaatgacaaccccaatctgcacagccttccctttgagctggcgctctgc
agcaaactgtcaataatgagtattgagaactgccctctcagccaccttccacctcagatc
gttgctgggggaccctcgttcatcattcagttcctaaaaatgcagggaccatatcgtgcc
atggtctga
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