Trachemys scripta elegans (red-eared slider): 117880243
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Entry
117880243 CDS
T07347
Symbol
PDZRN3
Name
(RefSeq) E3 ubiquitin-protein ligase PDZRN3 isoform X1
KO
K15682
ligand of Numb protein X 3/4 [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117880243 (PDZRN3)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117880243 (PDZRN3)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Ligand of Numb proteins
117880243 (PDZRN3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PDZ
PDZ_6
PDZ_2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
Sina_ZnF
zf-C3HC4_4
zf-RING_5
zf-TRAF
PDZ_Tricorn
TRAF3_RING
Prok-RING_4
RING_XB3-XBAT31
Motif
Other DBs
NCBI-GeneID:
117880243
NCBI-ProteinID:
XP_034632106
LinkDB
All DBs
Position
7:complement(11241347..11443222)
Genome browser
AA seq
1060 aa
AA seq
DB search
MGFELDRFSGEVDPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQGRCPVQCQRIS
TKELNHVLPLKSLILKLDIKCEHHARGCEQVVKLQQLGAHAERCDYSPARCRHPGCSEVL
NRRDVDAHMRESCEARPVGICEQGCGLVLTHREHRAGGHCCLEALQGHNRCLQAKVGGLE
KELKKEALRAGKREKSLLAQLSAVQLELQMTALRYQKKFTEYSARLDSLSRSLAAPPCKG
EETKALTLVLHRDSGSLGFNIIGGRPCVDNQDGSSSEGIFISKIIDSGPAAKEGGLQIHD
RIIEVNGKDLSKATHDQAVEAFKTAKEPIVVQVLRRTPRTKIFSPSHESHLVDMGTQTDI
TFEHIMALTKMGSPPPPVSVLDPYLLPEDHSSVHEYYDPNDYMGGIHQEMDRDELELEEV
DLHRVNSQDKLGLTVCYRTDDEDDIGIYVSEIDPNSIAAKDGRLREGDRIIQINGIEVQN
REEAVALLTSEESKNVSLLVARPEIQLDEGWMDDDRNDFLDDLHMDMLEEQHHQAMQFTA
SMLQQKKHEEDGGTTDTATILSNQHEKDSGVGRTDESTRNDESSEQENNADDHTTSSNTL
GSQKKLVYSHDTLGSGDMQFSNESFISADCTDTDFLSIPVDECERFRELLELKCQVKSAN
PYSLYYHNSALDISKSDHESVDRELEMLNEELRNIELECLNIVRAHKMQQLKDQYREPWM
LHNSGFRNYNTSIDARRHELSDITELPEKSDKDSSSAYNTGESCRSTPLTLQISPDNSLR
RTAEGSSCQGNEGAEAYNVSQKNLLPSSESHESGSAKYLSSPKDPDLGKQLESNERKASD
GSKSPAQKLAGSYISPYHHSPYKHAHIPAHAQHYQSYMQLIQQKSAVEYAQSQMSLVSMC
KDFNSSSQSEPRMEWKVKVRSDGTRYITKRPVRDRLLRERAIKIKEERSGMTTDDDAISE
MKMGRYWSKEERKQHLVKAKEQKRRREFMMQSRLDCLKEQQGADEKKEMNIIELSHKKMM
KKRNKKIFDNWMTIQELLTHGTKSPDGTRVYNSFLSVTTV
NT seq
3183 nt
NT seq
+upstream
nt +downstream
nt
atggggttcgagctggatcgcttcagcggggaggtggatcccgacttcaagtgcaacctg
tgcaacaaagttctggaggacccgctgaccaccccgtgcggccatgtgttctgcgcgggc
tgcgtgctgccctgggtggtgcagcagggccgctgcccggtgcagtgccagcgcatctcc
accaaggagctcaaccacgtcctgccgctcaagagcctcatcctcaaactggacatcaag
tgcgagcaccacgcccggggctgcgagcaggtagtgaagctgcagcagctgggcgcccac
gccgagcgctgcgactactcgccggcccgctgccgccacccggggtgcagcgaggtgctg
aaccgccgcgacgtggacgcgcacatgcgggagagctgcgaggccaggccggtgggcatc
tgcgagcagggctgcggcttggtgctgacccaccgggagcaccgcgccggcggccactgc
tgcttggaagccctgcagggccacaaccgctgcctgcaggcgaaggtcggcgggctggag
aaggagttgaagaaggaggcgctgcgggccggcaagcgggagaagtcgctgctggcccag
ctctcggccgtgcagctggagctgcagatgacagcgctgcgctaccagaagaagttcacc
gagtacagcgcccgcctggactcgctcagccgcagcctggccgcgccgccctgcaagggt
gaagagactaaagcactgactcttgtccttcatcgcgactctggctctcttggatttaat
attattggtggccggccatgtgtggacaatcaagatggctcatctagtgaaggaattttt
atatcgaaaataattgacagtgggcctgctgccaaagaaggagggctgcagattcacgac
aggattattgaggtaaatggaaaagatttatctaaagcaacacatgaccaggcagtggaa
gcattcaaaacagccaaagagcccatcgttgtgcaggtcctgaggagaactccacgcact
aagatcttcagtccttcacatgagtctcatctggtagatatgggcacccagacggatata
acctttgaacacatcatggctctaaccaagatgggatcccctcctccaccagtctcagta
ctagatccatacctcttacctgaggatcattcatcggtgcatgaatactatgacccgaat
gactacatgggaggcattcatcaagaaatggacagagacgagttagaattagaggaagtg
gacttgcatagagtgaacagccaggacaagctcggccttactgtatgttatcgaactgat
gatgaagatgacattggtatttatgttagcgagattgatcccaacagcattgctgcgaaa
gatggtcgcctgcgggagggagatcgcattattcaaattaatggcatagaggtacagaac
cgagaagaagctgtggcacttctaaccagtgaagagagcaagaatgtctccttacttgta
gcaagaccagaaatccagctggatgaaggatggatggatgatgacagaaatgattttctg
gatgacttacacatggacatgctagaggaacagcaccaccaggcaatgcagtttactgcc
agcatgcttcagcagaagaagcacgaagaagatggaggcaccacagacactgccactatc
ttatctaaccagcacgagaaggacagcggtgtgggacgcacagatgagagcacgcgaaac
gatgaaagctcagagcaggagaataacgccgatgatcacaccacttcctctaacacttta
ggaagccagaagaagctggtgtacagtcatgacactctaggaagtggtgacatgcagttc
agcaatgagtcatttatctcagccgactgcacagacacagacttcctcagcatcccggtg
gatgaatgtgagagattccgcgaactgctggagctgaagtgccaagtcaagtctgccaac
ccatacagtctgtattatcataacagtgccctggatataagtaagagtgaccacgaaagc
gttgacagggagctggagatgctgaacgaggagctgcggaatattgagctagagtgtctg
aatatcgtgagagctcataaaatgcaacagctgaaggatcaataccgggagccttggatg
ctccataacagcggattccgtaactacaacacgagcatcgatgcgcgcaggcacgagctc
tcagacattacagagctccctgagaaatctgacaaggacagctcgagtgcgtataataca
ggcgagagctgtcgcagcacaccgctcacgctgcagatttcccctgacaattcactgcgc
agaactgcagaaggcagcagttgtcaaggtaatgagggggcagaggcatacaatgtctcc
cagaagaatttgctacctagctcagaaagtcacgaatccggctctgctaaatatctctcg
tcacctaaagatccagaccttggcaagcaactggaaagcaacgaacgaaaagccagtgat
ggaagcaaaagcccagctcagaaactggctggctcctacatctctccatatcatcactct
ccctataaacacgctcatatcccagcccacgctcagcactatcagagctacatgcagctg
atacaacagaaatcagccgtggaatatgcacagagccaaatgagcctagtgagcatgtgc
aaagactttaattcttcaagccaaagtgaaccccggatggaatggaaagtcaaggtcagg
agtgatggaacccgctacatcacaaagaggccagtcagggacaggctgctgagagaacgt
gccataaagattaaggaagagcgcagtggtatgacgacagatgacgacgctataagtgag
atgaagatgggccgctattggagcaaggaggaacggaagcagcatttggtgaaagcgaag
gagcagaagaggcggcgtgagtttatgatgcagagcaggttagattgtttaaaggaacag
caaggtgcagacgaaaagaaagagatgaacatcattgaactgagccacaaaaaaatgatg
aagaaaaggaataaaaaaatctttgataattggatgacaatccaagaactcttaacccat
ggcacaaagtcccccgatggcacgagagtgtacaattccttcctgtcagtgactactgta
taa
DBGET
integrated database retrieval system
