Trachemys scripta elegans (red-eared slider): 117880278
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Entry
117880278 CDS
T07347
Symbol
DDX21
Name
(RefSeq) nucleolar RNA helicase 2
KO
K16911
ATP-dependent RNA helicase DDX21 [EC:
5.6.2.7
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tst03009
]
117880278 (DDX21)
03036 Chromosome and associated proteins [BR:
tst03036
]
117880278 (DDX21)
Enzymes [BR:
tst01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
117880278 (DDX21)
Ribosome biogenesis [BR:
tst03009
]
Eukaryotic type
Pre-60S particles
Helicases
117880278 (DDX21)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
117880278 (DDX21)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
GUCT
Helicase_C
DD_DDX21-DDX50
ResIII
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
AAA_30
Motif
Other DBs
NCBI-GeneID:
117880278
NCBI-ProteinID:
XP_034632186
LinkDB
All DBs
Position
7:82797551..82825061
Genome browser
AA seq
703 aa
AA seq
DB search
MPAAALLAADSEPETALEGEAARAGRRRKHKDKKEKKSKRRNKSKELKSQTEENELSEDD
LEPPKPKKKKEVKEKVDREIEENSPEDKVKSSSISNGVVHSKAQCNSSEASSAEYDSDQE
PVKQLTEEEREGAFSNFSISKETTELLKARGVKYLFSVQAKTFQPIYDGKDVIAQARTGT
GKTFSFAVPLIEKLQGDTLERKRGRTPKVLVLAPTRELAIQVARDFKDVTKKLTVACFYG
GTPYNGQIEHIKNGIDILVGTPGRIKDHLQNGKLDLSNVKHVVLDEVDQMLDMGFAEQVE
EILSFAYKKDSEDNPQTLLFSATCPHWVYDVAKKYMKSGYEQIDLIGKKTQKTAMTVEHL
AIECHWSQRAAVIGDVIQVYSGSHGRTIIFCETKKDANELALNASIKQDAQSLHGDIPQK
QREITLKGFRNGAFEVLVATNVAARGLDIPEVDLVIQSSPPKDVDSYIHRSGRTGRAGRT
GMCICFYQRKEEDQLRHVEQKAGITFKRVGVPTATDIIKASSKDAIRFLDSVPPSAIDYF
KQSAQRLIEEKGAVEALAAALAHISGATSIEQRSLLNSDAGYVTMTLQCSVEMHNLGYAW
RGLKEQLGDEIDNKVIRMRFLKGKMGVCFDVRTAELNRIQEQWQDSRRWQLSIATELPEL
EEIPREAGRGFSNFSNGRQGGGGFNKNNRFKNGGQKRSFHRAF
NT seq
2112 nt
NT seq
+upstream
nt +downstream
nt
atgcccgcagccgccctccttgcagccgacagcgagcctgagaccgccctggaaggcgag
gccgcccgggcgggccggaggaggaagcacaaggataaaaaggagaagaaatctaaacgc
cgcaataaatccaaggagctgaaatcccaaacagaggaaaatgagctatctgaagatgac
cttgagcctcctaaacccaaaaagaagaaagaagttaaagaaaaagtggatcgagagatt
gaagaaaacagcccagaggacaaggtgaaatcctcgtccataagcaatggtgttgtccac
tcaaaagctcagtgtaattccagcgaagcatcaagtgcggaatatgacagtgaccaagag
ccagtaaagcagctgacagaagaggagagagaaggtgccttctctaatttctctatctcc
aaagaaacaactgagcttcttaaagctcgaggagtaaagtacctgttttctgtgcaagca
aagaccttccagcccatatatgatggcaaagatgtgatcgctcaggctcgaactggaact
gggaaaacgttttcttttgctgttcctttgattgaaaaacttcagggagacacactagag
aggaagagaggccgcacgccaaaggtgctagttcttgcgccaacgagagagctggcaatc
caggtagccagggactttaaggatgtcacaaagaaactcacagtggcttgtttttatgga
ggaacgccatacaatggacaaattgaacatattaaaaacggcattgacatcttagttggg
actcccggacgaattaaagaccaccttcagaatggcaagctggacctttccaatgtgaag
catgttgttttggatgaagttgatcaaatgttggacatgggctttgctgaacaagtggag
gaaattctatcatttgcttacaaaaaagattctgaagacaatccccaaacactgctgttt
tctgcaacttgtccacactgggtgtatgatgtggctaaaaaatacatgaaatccggatat
gaacagattgaccttattggaaagaagactcaaaagacggctatgactgtagagcatttg
gctatagagtgtcactggtctcagagagcagcagttattggggatgtcattcaggtttac
agtggcagtcatggacggaccatcatattttgtgagactaaaaaggatgcaaatgaactg
gccctgaatgcttctattaaacaggatgcccagtcattgcatggtgacattccacagaaa
cagagagagatcacgttaaagggtttcagaaatggagcatttgaagttttggttgcaacc
aatgtagctgcccgtggtttagatatccctgaagttgacctggtcatacagagttcaccc
ccaaaggatgtggattcatatatccatcgatctgggcgcacaggaagagctggacggact
ggaatgtgtatctgtttttatcagcgaaaggaagaagatcaattaagacacgtagaacaa
aaagcgggcattacatttaagcgtgtaggtgtgcctacagcaacagatataattaaagcc
tccagtaaagatgctatcaggtttttggattccgttcctccttctgccatcgactatttc
aaacaatcagctcagcggctgatagaggaaaagggggcagtggaagctctggctgcagca
ctagcccatatttctggggctacttccattgaacagcgttccttgctcaactcagatgcg
ggctatgtgacaatgacattacaatgttcggtagagatgcacaaccttggctatgcttgg
cgaggactaaaagaacagcttggtgatgaaatagacaataaagttatcagaatgcgtttt
ctcaagggaaagatgggtgtgtgctttgatgtccgtacagctgagctaaatcgtatacag
gagcaatggcaagattcaagacgctggcagctgtccatagcaacggagttacctgagcta
gaagaaattccacgtgaagcaggccgaggtttctctaacttcagtaatgggaggcaagga
ggcggtggctttaacaaaaataacagattcaaaaacggaggccagaaacgaagttttcac
agagcattttag
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integrated database retrieval system
