Trachemys scripta elegans (red-eared slider): 117880345
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Entry
117880345 CDS
T07347
Symbol
SYVN1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin isoform X1
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04120
Ubiquitin mediated proteolysis
tst04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
117880345 (SYVN1)
04120 Ubiquitin mediated proteolysis
117880345 (SYVN1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117880345 (SYVN1)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117880345 (SYVN1)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117880345 (SYVN1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-ANAPC11
zf-RING-like
zf-RING_5
zf-HC5HC2H
zf-C3H2C3
zf-Nse
Motif
Other DBs
NCBI-GeneID:
117880345
NCBI-ProteinID:
XP_034632331
LinkDB
All DBs
Position
7:31695599..31721070
Genome browser
AA seq
647 aa
AA seq
DB search
MDRLGGAAGRWAGEMFRTAVMMAASLALTSVVVAHAYYLKHQFYPTVVYLTKSSPSMAVL
YIQAFVLVFLLGKFMGKVFFGQLRAAEMEHLLERSWYAVTETCLAFTVFRDDFSPRFVAL
FTLLLFLKCFHWLAEDRVDFMERSPNISWLFHFRIISLMLLLGVLDFLFVSHAYHSILTR
GASVQLVFGFEYAILMTMVLTIFIKYILHSVDLQSENPWDNKAVYMLYTELFTGFIKVLL
YMAFMTIMIKVHTFPLFAIRPMYLAMRQFKRAVTDAIMSRRAIRNMNTLYPDATPEELQA
MDNVCIICREEMVMGAKRLPCNHIFHTSCLRSWFQRQQTCPTCRMDVLRASLPTQSQTPP
EQQEQAQQQQQQPPPHHTPLIPQPPNFPQGILPPFPPGMFPLWPPIGPFPPVPGVQPPNN
AENPSAASSAPSTSGIQTTGSTSRPGGDSASGSDTAPVGAVPGFPFPPPWMGMALPPLFG
FPPMPVPPAGFAGLTDEELRAMEGHDRQHLEARLQCLQNIHTLLDAAMLQINQYLTVLTT
IGSPRPTQLPSSLNTSTSSQETPTRESTTFNSPDSTSSPGTSPAVAAVEPDSTGQTDDPS
GLVGAEGYTEPAGHEEEEEQPLPGEPDTAELRRRRLQKLESSSPPSH
NT seq
1944 nt
NT seq
+upstream
nt +downstream
nt
atggaccgattggggggtgcagcaggtcgttgggctggggagatgttccgaacggcagtc
atgatggctgccagcctggctctgacatcggtggtagtggctcatgcctattacctgaag
caccagttctacccaacagtggtgtatctgaccaaatccagccccagcatggcagttctc
tacattcaggctttcgttttggttttcctcctgggcaaattcatggggaaagtgtttttt
ggccagctccgagcagcagaaatggagcacctacttgagagatcatggtatgcggtcacg
gaaacttgcctggccttcaccgtcttcagagatgacttcagtccccgctttgtggccctc
ttcaccctcctcctgttcctcaagtgcttccactggcttgctgaggaccgggtggacttt
atggagaggagtccaaacatctcctggctctttcatttccgcataatctctctgatgctc
ttgttgggcgtcctggatttcctgtttgtcagccatgcctaccacagcatcctcacccgg
ggagcctccgtccagctggtctttgggtttgagtatgccatcctcatgaccatggtgctc
acaatcttcataaagtacattctgcattcagttgacctgcagagtgagaatccatgggac
aacaaggctgtctacatgctgtacacggagctcttcacaggcttcattaaagtgctgctg
tacatggccttcatgaccatcatgattaaagtgcacactttccctctcttcgccatccgg
cccatgtacctggcaatgaggcagttcaagagagctgtgactgatgccatcatgtcacgc
cgcgccattcgcaacatgaacactctatatcctgatgccactccagaagagcttcaggcc
atggataatgtgtgcattatctgccgggaggagatggtgatgggtgctaaacgcctgcca
tgcaaccacatattccacaccagctgcctgcgttcctggttccagcggcagcagacctgc
cccacctgccgcatggacgtcctccgtgcctccctccccactcagtcccaaacgccacct
gagcaacaggagcaagcgcagcagcagcaacagcagccaccgccgcaccatactccactg
attccccagccgcctaacttcccccaaggaatcctgcccccgtttcctcctgggatgttc
cctctctggcctcccataggtccatttcctccagtgcctggtgtccaaccacccaacaat
gcagagaatccctctgctgcttccagtgcaccctccacttcaggcattcaaacaacaggg
agtacctcgagacctggtggtgattcagcatctggatctgacactgcccctgtgggagca
gtgcctggctttcccttccctcccccatggatgggaatggcattgccacctctatttggc
ttccctcccatgcctgtgccacccgccgggtttgctgggttgacagatgaagagctccgt
gccatggaaggccatgaccggcagcatctggaagccaggctccagtgtctgcagaacatc
cacacgctcctagatgcagccatgttacagataaaccagtatctcaccgttctgacgacc
attgggtcaccccgtcctacgcagctgccaagctccctaaacacttcgacctcctctcaa
gagacacccaccagagaatccaccactttcaattcacccgacagtacctcttccccaggg
acctctccagcagtggcagcagtggaaccagactcaacaggtcaaacagatgatccatct
ggattggtgggtgcagagggatacacagagccagccgggcacgaggaagaagaggagcag
cctttaccgggggagcctgacacagctgagcttcgcaggcgccggcttcagaaactggaa
tcctcctctcccccttcccattga
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