Trachemys scripta elegans (red-eared slider): 117880697
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Entry
117880697 CDS
T07347
Symbol
USP4
Name
(RefSeq) ubiquitin carboxyl-terminal hydrolase 4 isoform X1
KO
K11835
ubiquitin carboxyl-terminal hydrolase 4/11 [EC:
3.4.19.12
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tst01002
]
117880697 (USP4)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117880697 (USP4)
Enzymes [BR:
tst01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
117880697 (USP4)
Peptidases and inhibitors [BR:
tst01002
]
Cysteine peptidases
Family C19: ubiquitin-specific protease family
117880697 (USP4)
Ubiquitin system [BR:
tst04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
UBP/USP
117880697 (USP4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UCH
Ubiquitin_3
DUSP
UCH_1
USP7_C2
Choline_bind_1
Choline_bind_3
Motif
Other DBs
NCBI-GeneID:
117880697
NCBI-ProteinID:
XP_034632980
LinkDB
All DBs
Position
7:52292245..52441904
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AA seq
943 aa
AA seq
DB search
MAAELDGGPRPDVGAQRAELGPLLGIALRPGESWYLIDSRWFKQWKKYVGFDSWDMYNVG
EPNLFPGPIDNSGLFADPEIQTLKEHLIDELDYVLVPTEAWNKLVNWYGCVEGQQPIVRK
VVEYGLFVKHCKVEVYLLELKLCENSDPTNVLTCHFSKADPIATIEKEMRQLFNIPSEKE
TRLWSRYMSNAYEQVSNLDSTVQDAGLYHGQVLLIEVKNEDGTWPRQSLPAKSSTATSRN
FTATSASSVNSYSSIRGISSAIANGDSNNSFGLTNSSLGRGVSGFSYSCRESPFQSQPGI
CGLSNLGNTCFMNSALQCLSNTPPLTEYFLEDRYEAEINHDNPLGMRGEIAEAYAELIKQ
MWSGRHSHVAPRMFKTQVGRFAPQFSGYQQQDSQELLAFLLDGLHEDLNRVKKKPYLELK
DANGRPDSVVAKEAWENHRLRNDSIIVDIFHGLFKSTLVCPKCSKVSVTFDPFCYLTLPL
PLKKDRSMDVSLVFADLHRRPTQYRVVVPMMGAVSDLCEALSKLSKIPAENMVVTDVYNH
RFHKIFQMDEGLSHIMPKDNIFVYEVCKSSEDGAECITLSVYFREKRIRQSSTSSGTVLC
GQPLLISVPKHKLTLDHLYNVVLEQIGHYIKFPLTKEYSSVCLDSGICNGSSRGCEVEEM
EHQDGDEEGREKASETDSCQSEGCAHDLLGKEGQHHKKHLFAFSLVNSYGTSEINSITTE
GKLLKLNSYATLAIDLDPDTRKLLFDEQESQAFEKDESMLQSQKKKTTVALKDCIELFTT
METLGEHDPWYCPNCKKHQQATKKFDLWSLPRILVVHLKRFSYNRYWRDKLDTVVEFPIR
DLNMSEFVCDPIADPYVYDLIAVSNHYGAMGVGHYTAYAKNKVNGKWYYFDDSSVSMASE
DQIVTKAAYVLFYQRRDSKQHVAPSLPAESELASEECDGMDTN
NT seq
2832 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagttagatggtggcccgaggccagacgtcggggcccagcgggcagagctg
ggaccgctgctagggatagctctgaggccgggcgagtcctggtatttgattgacagtcgg
tggttcaaacagtggaagaagtatgtgggttttgacagctgggacatgtacaacgtgggt
gagcctaacctgtttcctggacccatcgataactctggactctttgcagatccagaaata
cagaccttaaaagaacatctcattgatgagctggattatgtgttggttcccactgaagcc
tggaataagctagtgaactggtatggctgtgtagaggggcagcaacctattgtaagaaaa
gtggtggagtacggtctgtttgtgaagcactgtaaagtagaagtttacctcctcgaactg
aagctgtgtgaaaatagtgatcctaccaatgtgttgacctgccatttcagcaaagcagac
cccattgccaccattgagaaggaaatgcgacagttgtttaatatccccagtgagaaggaa
actaggttatggagtaggtatatgagtaatgcctatgagcaggtcagcaatctggacagc
actgtacaagatgcagggctctatcacggtcaggtgctgttaatagaagtgaagaatgaa
gatggtacatggcctaggcagtctcttccggcaaaatcaagcactgcaactagcagaaat
tttactgctacttcagcatcatcagtaaattcttattcctcaataagaggaatctcttct
gccattgcaaatggtgatagcaataactcctttggactgaccaactccagccttggcagg
ggagtctctggcttctcctacagctgcagggagtcccctttccagtcacagcccggcatc
tgtgggctcagtaacttgggaaacacctgcttcatgaactctgcattacagtgtttgagt
aacaccccacctctgactgagtatttcctggaagatagatatgaggctgaaataaatcat
gacaatcctctggggatgagaggagaaattgcagaagcatatgcagaacttattaagcag
atgtggtctgggagacactctcacgtggcaccacgtatgttcaaaacccaggtcggccgt
tttgcccctcagttctcagggtaccagcagcaagattctcaggagctcttggcatttctc
ctggatggcttgcacgaggatctgaaccgagtgaagaagaaaccctacttggagctcaag
gatgccaatggcaggcctgattcggtagtggcgaaagaagcctgggagaaccatagatta
agaaatgactctatcatcgtggatatttttcatggccttttcaaatccaccttggtctgt
ccaaaatgctctaaagtttctgtgacttttgaccctttctgctatttaactcttccactg
cccttgaagaaagatcgttccatggacgtttctctggtttttgcagacctgcatcgtaga
cctacccagtatcgggtagttgtgccaatgatgggggctgtatcagacctgtgtgaagct
ctttccaaactctccaagatccctgcagaaaatatggtggtgacagatgtttataatcac
cgattccacaaaattttccaaatggatgaagggttaagtcacatcatgccaaaagacaac
atctttgtatatgaagtttgcaagtcaagtgaggatggcgctgagtgcatcactctttct
gtatacttcagagaaaagagaataagacagtccagcacttcttcggggactgttctttgt
gggcagccactgctaatctctgtgcccaaacacaagctcactctggatcacttgtacaat
gttgttttggaacagattggccactacattaaatttcctctgacaaaagaatattctagt
gtatgcctggacagtgggatctgcaatggctccagtcgtggctgcgaagttgaagagatg
gaacatcaggatggagatgaggagggcagggaaaaggcctcagaaacagattcctgccag
tcagagggctgtgcacatgatttgctggggaaggaagggcagcatcacaagaagcatctg
ttcgcctttagccttgtgaattcctatgggacttctgagataaactcaattacaacagag
gggaaacttctaaaactgaactcctatgccacccttgctattgacttggatccagacact
cggaagctgctgtttgatgaacaagagtcacaggcatttgaaaaggatgaaagtatgttg
cagtcacagaagaagaaaactactgttgctctaaaagactgtatagaactctttactaca
atggaaacgcttggtgaacatgacccttggtactgccctaactgcaagaagcatcagcag
gccacaaagaagtttgatctatggtctttgcccaggattttggtggtgcatttaaaacgc
ttctcgtacaacagatactggagggataaacttgacactgtggttgaattccccatcagg
gatttgaacatgtctgagtttgtctgtgacccaatagctgatccatatgtgtatgacctc
attgcagtgtccaatcactatggagctatgggagtaggccactatactgcatatgcaaag
aacaaagtgaatggcaaatggtactactttgatgacagcagtgtatcaatggcttctgaa
gatcaaatagtgacgaaagctgcatatgtgctattctatcagcggcgggacagcaagcag
cacgtagccccgtctctgcctgcagaaagtgagctggcatcggaagagtgtgatggcatg
gataccaactga
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