Trachemys scripta elegans (red-eared slider): 117880846
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Entry
117880846 CDS
T07347
Symbol
PBRM1
Name
(RefSeq) protein polybromo-1 isoform X1
KO
K11757
protein polybromo-1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117880846 (PBRM1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tst03021
]
117880846 (PBRM1)
03036 Chromosome and associated proteins [BR:
tst03036
]
117880846 (PBRM1)
Transcription machinery [BR:
tst03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117880846 (PBRM1)
Chromosome and associated proteins [BR:
tst03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
117880846 (PBRM1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117880846
NCBI-ProteinID:
XP_034633287
LinkDB
All DBs
Position
7:43684523..43767314
Genome browser
AA seq
1711 aa
AA seq
DB search
MRRLAFRGAGCTLKKLDSMGSKRRRATSPSSSISGGDFDDGHHSTNIPGPSRKRRRLSNL
PTVDPIAVCHELYNTIRDYKDEQGRLLCELFIRAPKRRNQPDYYEVVSQPIDLMKIQQKL
KMEEYDDVNLLTADFQLLFNNAKAYYKPDSPEYKAACKLWDLYMRTKNEFVQKGDAEEEE
EEDEGHDNQGAMSEVSSPSYLKEILEQLLEAVAIATNPSGRLISELFQKLPSKVQYPDYY
AIIKEPIDLKTIAQRIQNGSYKSIHAMAKDIDLLAKNAKTYNEPGSQVFKDANAIKKIFN
MKKAEIEHNELAKSSLRIRTPSNLAASKLTGPSSQGKGSVGDERNSTNKYYRNKRSVQGD
RLSAITMALQYGSESDEDAALAAAARYEEGESEAESITSFMDTSNPLYQLYDTVRNCRNN
QGQLISEPFFHLPSKKKYPDYYQQIKMPVSLKQIRTKLKNHEYETLDHLECDLNLMFENA
KRYNVPNSAIYKRVLKMQQVMQAKKKELARRDDIEDGDSMISSATSDTGSSKRKSKKNIK
KQRMKILYNVVLEAREPGTGRRLCDLFMVKPSKKDYPDYYKIILEPMDLKIIEHNIRSEK
YSGEEAMIEDMRLMFRNARHYNEEGSQVYNDAHILEKILKEKKKELGPLPEDDDIASPKL
KLSRKSGISPKKSKYMTPMQQKLNEVYEAVKNYTDKRGRRLSAIFLRLPSRSELPDYYVT
IKKPVDMEKIRSHMMANKYQDIDSMVEDFVMMFNNACTYNEPESLIYKDALVLHKVLLET
RRDIEGDEDSHVPNVTLLIQELIHNLFVSVMSHQDDEGRCYSDSLAEIPAVDPNFPNKPP
LTFDIIRKNVENNRYRRLDLFQEQMFEMLERARRMNRTDSEIYEDAVELQQFFIKIRDEL
CKNGEILLSPALSYTTKHLHNDVEKEKKEKLPKEFEEDKLKREEEKREAEKSEDSAAGAG
LSSLHRTYSQDCSFKNSMYHVGDYVYVEPAEANLQPHIVCIERLWEDSAGEKWLYGCWFY
RPNETFHLATRKFLEKEVFKSDYYNKVPVSKILGKCVVMFVKEYFKLCPENFRDEDVYVC
ESRYSAKTKSFKKIKLWTMPISSVRFVPRDVPLPVVRVASVFANTDKVEDEKHTETLEDN
KVGDSILNLEKEKEDVPVEMSNGEPGCHYFEQLRYNDMWLKVGDCVFIKSHGLVRPRVGR
IEKMWVRDGAAYFFGPIFIHPEETEHEPTKMFYKKEVFLSNLEETCPMTCILGKCAVLSF
KDFLSCRPTEISENDVLLCESRYNESDKQMKKFKGLKRFSLSAKVVDDEIYYFRKPIVPQ
KEPSPLLEKKIQQLEAKFAELEGGDEDIEEMAEEEGEIIEAPSMPQLQTPLASELDIMPY
TPPQSTPKSAKGSTKKEGSKRKINMSGYILFSSEMRAVIKAQHPDYSFGELSRLVGTEWR
NLEATKKAEYEERAAKVAEQQERERAAQQQQQNSSPRAGTPVGALMGVVPPPTPMGMLNQ
QLTPVAGMIGGYPPVLPPLQGPVDGIVSMSSMQPLHPGVPPPHQLPPGMPGIPGIPPPGV
IGQSVSSMVGTPAPGGSPFGQPMGLLGPPGQQAPPPYPGQSQASQQVIQQPTTPMFVSPP
PKTQRLLHSEAYLKYIEGLSAESNSISKWDQTLSARRRDVHLSKEQESRLPSHWLKSKGA
HTTMADALWRLRDLMLRDTLNIRQAYNIENV
NT seq
5136 nt
NT seq
+upstream
nt +downstream
nt
atgaggagattggcttttcgaggtgctggttgtactctgaagaagttggattccatgggt
tccaagcgacgaagggctacttctccttccagcagcatcagtggaggagattttgatgat
ggtcaccattcaacaaatataccaggcccaagccggaaaagaaggagactttcaaatctc
ccaactgtagatcctattgctgtgtgccatgaactgtacaacacaatcagagattacaaa
gatgaacagggcaggctcttatgtgagcttttcattagggcaccaaaacgaagaaatcag
ccagactactatgaagtggtttctcagcctattgatttaatgaaaatccaacagaaacta
aaaatggaggagtatgatgatgtgaacctactgactgctgactttcagctactatttaac
aatgcaaaggcttactataagccagattctcctgaatataaagctgcctgcaaactttgg
gatttgtatatgcgcacaaagaatgagtttgttcagaaaggtgatgctgaggaggaggag
gaagaggatgaagggcatgacaatcaaggggcaatgtctgaagtatcttctccaagctac
ttgaaagagattcttgaacagctgcttgaagctgtagccatagccaccaacccatcagga
cgtctcataagtgagctgtttcagaagcttccctctaaagtgcaatatcctgactattat
gcaataattaaggagcccatagatcttaagactattgcccagaggatacagaatggaagt
tataaaagcattcatgcaatggccaaggatatagatcttttagcaaagaatgccaaaacc
tataatgagcctggatctcaagtattcaaggatgcaaatgctattaaaaaaatatttaat
atgaaaaaagctgaaattgaacataatgaactggccaagtcaagtcttcgaatcaggact
ccatcaaatttggctgcttccaaactgacaggtccttcctcacagggtaaaggcagtgtt
ggtgatgagagaaattctactaacaaatattaccgtaacaaaagatcagtccaaggggat
cgtttatctgcaataaccatggcattgcagtatggatcagaaagtgatgaggatgctgct
ttggctgctgctgcccgttatgaagaaggagagtctgaagcagagagcatcacttccttt
atggatacttctaaccctctttatcagctttatgatacggttagaaactgccgaaataac
cagggtcagcttatatcagaaccctttttccatttgccttccaagaaaaaatatccagat
tattatcagcaaatcaaaatgcctgtttcattgaagcaaatcagaaccaaactgaagaac
catgaatatgaaactctagaccacttggagtgtgatctgaacttaatgtttgaaaatgcc
aaacgctacaatgttcctaattccgccatctataagagagtactgaaaatgcagcaagtt
atgcaggcaaagaagaaagagctagctaggagagacgacattgaggacggagacagtatg
atctcttctgccacatctgatactggaagttcaaaaaggaaaagtaaaaagaatataaag
aagcagcgaatgaaaatcttatataatgttgttcttgaagctcgagagcctggcacaggc
agaagactctgtgatctatttatggttaaaccctccaaaaaggactatccagattattat
aaaatcatcttggagccaatggatttaaaaattattgagcataacatccgcagtgaaaaa
tactcaggggaggaggctatgatagaagatatgaggctaatgttccgaaatgcaaggcac
tataatgaggaaggctcacaggtatataatgatgcccatatcctagagaagattcttaaa
gaaaaaaagaaagagctgggacctcttcctgaagatgatgatatcgcttcccctaaacta
aagctaagtagaaaaagtggtatttcccctaagaaatcaaaatatatgactccaatgcaa
cagaaactgaatgaggtgtatgaagcagtgaagaactacacagataaacgaggcaggcga
ttaagtgccatcttcctgaggcttccatctcgatcagaactgcctgactattatgtaacc
attaaaaagccagttgacatggaaaaaataagaagtcacatgatggccaacaagtaccag
gacatcgattccatggtagaagactttgtaatgatgttcaataatgcctgcacttataat
gagccagagtctctgatttacaaagatgcccttgtcctacataaagttttgcttgaaact
agaagagacatagaaggagatgaggattctcatgtccccaatgtaacattgctgatccag
gaacttattcataacctttttgtgtctgtaatgagccatcaggatgatgagggcaggtgt
tatagtgactccttagctgaaattcctgctgttgatcccaacttcccaaacaaaccacct
ttgacttttgatattatccgaaagaatgtagaaaataatcgctacaggagactggacttg
tttcaagagcagatgtttgagatgctagagagggcaaggaggatgaaccggactgattca
gagatttatgaggatgctgtggaacttcagcagttctttattaaaatccgtgatgaactc
tgcaagaatggagagattcttctgtcaccagcactcagctacaccaccaagcatcttcac
aatgatgtagaaaaagaaaaaaaggaaaagctacccaaagaattcgaagaggataaactc
aaaagagaagaagagaagagagaagctgaaaagagtgaagattctgctgctggagctggt
ctgtcgagcttacatcggacttacagccaggattgcagctttaagaacagcatgtaccat
gttggggattatgtctatgtggaacctgcagaagccaacctgcaacctcatatagtctgt
attgagcgattatgggaagattcagctggggaaaaatggttgtatggctgctggttttat
cgaccaaatgaaacattccatcttgcaacacgaaaatttctggagaaggaagtttttaag
agtgattactataataaagttccagttagcaaaattttaggcaaatgtgtggtaatgttt
gttaaggagtattttaaattatgtcccgaaaactttagagatgaggatgtctacgtctgt
gagtctcgttactctgcaaagacgaagtcttttaagaagattaaactgtggaccatgccc
attagctctgtaaggtttgtccctcgagatgtgcccctgcctgtggtccgtgttgcttct
gtgtttgctaatacagacaaagtggaagatgagaaacacactgaaaccttagaggataat
aaagtgggagacagtatccttaaccttgaaaaggagaaagaagatgttccagtggaaatg
tcaaatggagaacctggttgccactactttgaacagctccgttataatgatatgtggctt
aaggttggggattgtgtctttataaaatcacatggcttagtgcgacctcgggtgggcaga
attgagaagatgtgggtacgggatggagctgcgtatttctttggcccaatcttcatacac
ccagaagaaactgaacatgaaccaactaaaatgttctacaagaaggaagtgtttttgagt
aacctggaagagacctgtccaatgacctgcattctgggaaaatgtgctgtgttgtcattc
aaggacttcctgtcttgtagaccaacagagatctctgaaaatgatgtgctactctgtgag
agccgctacaatgaaagtgacaaacagatgaaaaaatttaaagggcttaagaggttttca
ctctctgcaaaagtagtggatgatgaaatttactactttagaaaacccatagttcctcag
aaggagccatcaccactactggagaaaaagattcagcagctagaagcaaaatttgctgaa
ttggaagggggtgacgaggatattgaagagatggcggaagaagaaggtgaaatcattgaa
gcaccttctatgcctcagcttcagactccactggctagtgaactggatataatgccatac
actccaccacagtccactccgaagtctgccaagggcagcacgaagaaggagggatcaaaa
aggaagatcaacatgagtgggtatatcctatttagcagtgagatgagagctgtgattaaa
gctcagcacccagactactcctttggagagctcagcaggcttgtaggaactgaatggaga
aacttggaagcaaccaagaaagcagaatatgaagagcgggcagctaaagttgctgagcag
caggagagagagcgagcagcacagcaacagcagcagaattcctccccccgggcaggcact
cctgtcggggctcttatgggggtggtgccgccaccaacaccaatgggaatgctcaatcag
cagttgacacctgttgcaggcatgataggtggctatccgccagtgctgccacctttgcag
ggcccagttgatggcattgttagcatgagcagcatgcagccacttcaccctggggtgccc
ccaccccaccaacttccgccaggtatgccaggcatcccaggcatcccaccaccgggtgtt
ataggccaaagcgtttcttccatggtaggcactccggcaccaggaggaagtccctttgga
cagccaatgggattgcttgggccacctggccagcaggcaccacctccataccctggtcaa
agccaagcaagtcagcaggttatacagcagcccacaactccaatgtttgtctcccctcca
ccaaagacacagaggcttcttcattctgaggcctacctgaaatatattgaggggcttagt
gctgaatcaaatagtattagcaagtgggaccagaccctttcagcacgaagacgtgatgtc
catctatccaaagaacaagagagccgtcttccttcacactggttgaaaagtaaaggggcc
cataccacaatggcagatgccctgtggcgtcttcgagacttgatgctacgagacaccctt
aatatccgtcaagcatacaatatagaaaatgtttaa
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integrated database retrieval system
