KEGG   Trachemys scripta elegans (red-eared slider): 117880914
Entry
117880914         CDS       T07347                                 
Symbol
WDR82
Name
(RefSeq) WD repeat-containing protein 82
  KO
K14962  COMPASS component SWD2
Organism
tst  Trachemys scripta elegans (red-eared slider)
Pathway
tst03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:tst00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    117880914 (WDR82)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tst03019]
    117880914 (WDR82)
   03036 Chromosome and associated proteins [BR:tst03036]
    117880914 (WDR82)
Messenger RNA biogenesis [BR:tst03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     117880914 (WDR82)
Chromosome and associated proteins [BR:tst03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     117880914 (WDR82)
    COMPASS/SET1 complex (yeast)
     117880914 (WDR82)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd ANAPC4_WD40 WDR55 Beta-prop_WDR90_POC16_2nd EIF3I Beta-prop_TEP1_C WD40_MABP1-WDR62_2nd Beta-prop_EML WDR90_beta-prop_4th WD40_MABP1-WDR62_1st Beta-prop_WDR19_1st Beta-prop_SPT8 Beta-prop_RIG_2nd Beta-prop_WDR75_1st WD40_RFWD3 NBCH_WD40 Beta-prop_IFT140_1st WD_LRWD1 VPS8_N Beta-prop_WDR35_TULP_N Beta-prop_NWD2_C Beta-prop_NUP159_NUP214 Beta-prop_EIPR1 MinC_C
Other DBs
NCBI-GeneID: 117880914
NCBI-ProteinID: XP_034633395
LinkDB
Position
7:complement(45330565..45367443)
AA seq 313 aa
MKLTDNVLRSFRVAKVFRENSDKINCFDFSPNGETVISSSDDDSIVLYDCQEGKPKRTLY
SKKYGVDLIRYTHAANTVVYSSNKIDDTIRYLSLHDNKYIRYFPGHSKRVVALSMSPVDD
TFISGSLDKTIRLWDLRSPNCQGLMHLQGKPVCSFDPEGLIFAAGVNSEMVKLYDLRSFD
KGPFATFKMQYDRTCEWTGLKFSNDGKLILISTNGGFLRLIDAFKGAVLHTFGGYNNSKA
VTLEASFTPDSQFIMIGSEDGKIHVWNGESGMKVAVLDGKHTGPITCLQFNPKFMTFASA
CSNMAFWLPTIDD
NT seq 942 nt   +upstreamnt  +downstreamnt
atgaagctaacggacaacgtgctgcggagcttccgcgtggccaaggtcttccgcgagaac
tcggacaagataaactgcttcgacttcagccccaacggcgagaccgtcatctccagcagc
gacgacgactccatcgtgctctacgactgccaggagggcaaaccaaagagaacactgtat
agtaaaaagtatggagtggacctaatcagatacacacatgctgccaacactgtggtgtac
agctccaacaaaatagacgatacaatccgttacctctccctacatgataataaatacatc
cgatactttccagggcacagcaagagagtggttgccctgtccatgtctccagtggatgat
acctttatttctggatcacttgataaaaccatccgactttgggatctccggtctccaaac
tgccagggtttaatgcatcttcaggggaagcctgtatgctcctttgacccagaggggctg
atttttgctgctggagtcaattctgaaatggtgaagctgtacgatctccggtcttttgac
aagggtccatttgctacattcaagatgcagtacgatcgaacctgtgagtggacaggcttg
aagttcagtaacgacgggaagctcatcctcatatcaaccaatggagggttccttcgactg
attgatgcctttaagggagctgtactgcatacgtttgggggttataacaacagtaaggct
gtcacgttggaggcatcattcacaccagattcccagttcataatgattggttcagaggat
ggaaaaattcatgtctggaatggggagagtgggatgaaagtggctgtgttggatgggaaa
cacacaggtcctataacctgtctgcagttcaatcccaaattcatgacctttgccagtgcg
tgttccaacatggccttttggttgccaaccatagatgactaa

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