Trachemys scripta elegans (red-eared slider): 117880990
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Entry
117880990 CDS
T07347
Symbol
KCNMA1
Name
(RefSeq) calcium-activated potassium channel subunit alpha-1 isoform X1
KO
K04936
potassium large conductance calcium-activated channel subfamily M alpha member 1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04270
Vascular smooth muscle contraction
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09150 Organismal Systems
09153 Circulatory system
04270 Vascular smooth muscle contraction
117880990 (KCNMA1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tst04040
]
117880990 (KCNMA1)
Ion channels [BR:
tst04040
]
Voltage-gated cation channels
Potassium channel, calcium- and sodium-activated (KCa/KNa)
117880990 (KCNMA1)
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Ortholog
Paralog
GFIT
Motif
Pfam:
Slo-like_RCK
Slowpoke_C
BK_channel_a
Ion_trans
Ion_trans_2
TrkA_N
Motif
Other DBs
NCBI-GeneID:
117880990
NCBI-ProteinID:
XP_034633599
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All DBs
Position
7:complement(64839956..65711850)
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AA seq
1304 aa
AA seq
DB search
MANGSGVGSSSSASGGSGGIRMSNSISASNLNTDSSSSPVSVPKMDALIIPVTMEVPCDS
RGQRMWWAFLASSMVTFFGGLFIILLWRTLKYLWTVCCHCGVKNKEAQKINAGGETQADG
TCKPTDEKEETVAAEVGWMTSVKDWAGVMISAQTLTGRVLVVLVFALSIGALVIYFIDSS
NPIESCQNFYKDFTLQIDMAFNVFFLLYFGLRFIAANDKLWFWLEVNSVVDFFTVPPVFV
SVYLNRSWLGLRFLRALRLIQFSEILQFLNILKTSNSIKLVNLCSIFISTWLTAAGFIHL
VENSGDPWENFQNNQPLTYWECVYLLMVTMSTVGYGDVYAKTTLGRLFMVFFILGGLAMF
ASYVPEIIELIGNRKKYGGSYSAVSGRKHIVVCGHITLESVSNFLKDFLHKDRDDVNVEI
VFLHNISPNLELEALFKRHFTQVEFYQGSVLNPHDLARVKIESADACLILANKYCADPDA
EDASNIMRVISIKNYHPKIRIITQMLQYHNKAHLLNIPSWNWKEGDDAICLAELKLGFIA
QSCLAPGLSTMLANLFSMRSFIKIEEDTWQKYYLEGVSNEMYTEYLSSAFVGLSFPAVCE
LVFAKLKLLMIAIEYKSEKRESRSRKRILINPGNHVKIQEGTLGFFIASDAKEVKRAYFY
CKACHDDITDPKRIKKCGCKRLIYSKMSIYKRMKLACCFDCGRSERDCSCMSGSVHSNMD
TLERAFPLSSVSVNDCSTSLRAFEDEHPSTLSPKKKQRNGGMRNSPNSSPKLMRHDPLLI
PGNEQIDNMDASVKKYDSTGMFHWCPGKDIEKVILTRSEAAMTVLSGHVVVCIFGDAKSA
LIGVRNLVMPLRASNFHYHELKHIVFVGSLEYLKREWETLHNFPKVSILPGTPLSRADLR
AVNINLCDMCVILSANQNNIDDASLQDKECILASLNIKSMQFDDSIGVLQANSQGFTPPG
MDRSSPDNSPVHGLLRQPSITTGANIPIITELAKPGKLLPLVSISQEKNSGTHILMITEL
VNDSNVQFLDQDDDDDPDTELYLTQPFACGTAFAVSVLDSLMSATYFNDNILTLIRTLVT
GGATPELEALIAEENALRGGYSTPQTLANRDRCRVAQLALYDGPFADLGDGGCYGDLFCK
ALKTYNMLCFGIYRLRDAHLSTPSQCTKRYVITNPPYEFELVPTDLIFCLMQFDHNAGQS
RASLSHSSHSSYSSSKKSSSAHSIPSTANRQNRTKTRDSREKQNATRMNRMGQAEKKWFT
DETDNAYPRNIQIKPMSTHMANQINQYKSTSSLIPPIREVEDEC
NT seq
3915 nt
NT seq
+upstream
nt +downstream
nt
atggcaaatggcagcggcgtcggcagcagcagcagcgcctcgggaggcagcggcggcatt
agaatgagtaacagcatcagcgccagcaatctcaacacggactcgtcctcgtccccggtc
agcgtgcccaagatggatgcgctcatcatcccggtgaccatggaggtgccctgcgatagc
cgcggacagcgcatgtggtgggctttcctcgcctcgtccatggtcacgttctttggcggg
ctctttatcatcctgctctggaggaccctcaagtacctgtggaccgtctgctgtcactgc
ggggtcaaaaacaaggaggcccagaagattaatgctggtggggaaacccaggctgatgga
acctgcaaacctacagatgaaaaagaggagactgttgcagcagaagtgggctggatgacc
tctgtgaaagactgggcaggagtgatgatatctgcccagactctaaccggcagagtcctt
gttgtcttagtctttgctcttagtattggtgctcttgtaatatacttcatagattcgtca
aacccaatagaatcctgccagaatttctacaaagatttcacgttacagatagacatggct
ttcaacgtgttcttcctactctacttcggcttgcgtttcattgcagccaatgacaagctg
tggttttggctggaagttaactcggtagtagatttcttcacagtccctccagtgtttgtg
tcagtgtatttaaacagaagttggcttggtttaagatttttaagagcccttagactgata
cagttttcagaaattttgcagtttctgaatatcctaaaaacaagtaattccatcaagctg
gtgaatctgtgctctatatttatcagcacatggctgacagcagctgggttcatacatttg
gtggagaactcaggggatccatgggaaaatttccaaaataaccaaccacttacatattgg
gaatgtgtttatttactaatggttacaatgtccactgttggctatggagatgtttatgca
aaaacaacccttggtcgccttttcatggtcttcttcatcctcgggggattggccatgttt
gccagctacgtccctgaaatcatagagttaataggaaaccgcaagaaatatggtggttcc
tatagtgcggttagtggaagaaagcacatagttgtctgtggtcacataacacttgaaagt
gtgtccaacttcctgaaggacttcctgcacaaggacagagatgatgtgaacgtggaaatc
gtctttctgcataatatctcccctaaccttgagctggaagctctttttaaacgacacttc
actcaggtggaattttatcagggttcagttctcaatccgcatgacctggcaagagtaaag
atagagtcagcagatgcatgcctaatccttgccaataaatactgcgctgacccagatgct
gaagatgcctccaatattatgagagtaatttccataaagaattaccatccgaagataaga
attatcactcagatgctgcagtatcataacaaggcccatctgctaaatatcccaagctgg
aattggaaagaaggggatgacgcaatctgtcttgctgagctcaagctgggtttcatagcc
cagagctgcctggcaccgggcctctcgacaatgctagccaacctcttctctatgaggtca
ttcataaagattgaggaggatacgtggcagaaatactatctagaaggagtctcaaatgaa
atgtatacagaatatctatctagtgcctttgtgggtctgtctttccctgcagtttgtgaa
ctggtatttgcgaagctaaagctcttaatgatagccatagaatacaagtcagaaaaacgg
gaaagcagaagccgaaagcgtatattaatcaatcctggaaaccacgtcaagattcaagaa
ggtactttaggattcttcattgcaagtgatgccaaagaagtgaaaagggcatatttttac
tgcaaggcctgtcatgatgacatcacagatcccaaaaggataaaaaaatgtggctgcaaa
cggctgatctattccaagatgtccatctacaagagaatgaaactggcatgttgttttgat
tgcggacgctctgagcgtgactgctcttgcatgtcaggcagtgtacatagtaacatggac
acccttgagagagccttcccactttcttctgtctctgttaatgattgctccaccagttta
cgtgcctttgaagatgaacatccgtcgacactgtcacccaaaaaaaagcagcgaaatgga
ggcatgagaaattcacccaactcctcgcccaaactgatgaggcatgaccccttgttaatt
cccggcaatgagcagattgacaacatggatgccagtgtgaaaaaatatgactccacgggg
atgtttcattggtgtccaggaaaggacattgaaaaggtcattttgacacggagtgaagca
gcgatgacagttttaagtggtcatgtggtcgtttgcatattcggggatgctaagtctgca
ttgattggcgtaagaaatctagtgatgccattacgagccagcaactttcactaccatgaa
ctcaagcacattgtgtttgtgggttcacttgaatatctgaaaagggaatgggagacacta
cataacttccccaaggtttcaatcttgcctggtacaccattaagtcgggctgatttaagg
gctgtcaacatcaacctctgcgacatgtgcgttatcctgtcagccaatcagaataatatt
gatgatgcttcgctgcaggacaaggaatgcatcttggcgtcactcaacatcaaatctatg
cagtttgatgacagcattggggtcttgcaggctaattcccaagggtttacgccaccagga
atggataggtcatctccagacaacagtccagtccatggtctgttacgtcaaccctcaatc
acaacaggagccaacatacctattataacagagctagctaagcctggcaaacttctgcct
ttggtttcaatcagtcaggaaaaaaacagtggaacccacatactaatgataactgaactg
gtaaatgattcaaacgttcagtttttggaccaagatgatgacgacgacccagacacagaa
ttgtatcttacacagccatttgcatgtggaactgcattcgccgtcagtgtattggactcc
ctcatgagcgctacatacttcaatgacaatatcctcacactgatacggacgttggtaaca
ggaggagccacaccagagctggaagcgctgattgctgaggagaatgcactgagaggaggc
tacagcacaccccagacacttgcaaacagggacaggtgtcgagttgctcagttggctttg
tatgatgggccatttgcagacctaggggatggtggttgttatggagatctgttttgtaaa
gcactgaaaacatacaatatgctttgttttggaatttaccgattgagggatgcacatcta
agcacacctagccaatgcactaaacgctatgttatcacaaatccaccctatgagtttgag
cttgtgcccacagacttgatcttctgtttgatgcaatttgaccacaatgctggccagtcc
cgggccagtctctctcattcctcccattcttcctactcctccagcaaaaagagctcatcg
gctcactctatcccatcgacagcaaaccgacagaaccgcaccaagactcgggactcccgg
gaaaaacagaatgcaacaaggatgaatagaatgggccaagcagaaaagaaatggtttaca
gatgagacggataatgcctatcccagaaacattcaaatcaagcccatgagcactcacatg
gccaatcagatcaatcagtataaatctacaagcagcttgataccaccaatcagagaagtt
gaagatgaatgttga
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integrated database retrieval system
