Trachemys scripta elegans (red-eared slider): 117881115
Help
Entry
117881115 CDS
T07347
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tst03016
]
117881115 (RTCB)
Enzymes [BR:
tst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
117881115 (RTCB)
Transfer RNA biogenesis [BR:
tst03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
117881115 (RTCB)
Prokaryotic type
tRNA splicing ligases
117881115 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
117881115
NCBI-ProteinID:
XP_034633893
LinkDB
All DBs
Position
1:95215518..95232467
Genome browser
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKLDKNSWRIKKGFVPNMNVEGVFYVNEPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIIHRSIGLPDVHSGYGFAIGNMAAFDMSDPDAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDDIYNE
YAARKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
PEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDLHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHAAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagctacaacgatgagctgcagtacctggacaagctcgacaagaacagctgg
aggatcaagaagggcttcgtgcccaacatgaacgtggaaggagtgttttatgtaaatgag
ccgctagagaaattaatgtttgaggagttacgaaatgcctgcagaggtggaggtgctggt
ggattcttgccggccatgaaacagattgggaatgtggctgcactacctggcattattcat
agatctatcgggcttcctgatgtacattctggctatgggtttgccattggtaacatggca
gcatttgacatgagtgacccagacgcagtggtgtcaccaggtggtgtcggatttgacatc
aactgtggtgtccgactgctgcgtacgaatctggatgaaagtgacgtccagcccgtgaag
gaacagctcgcccaagccatgtttgaccatattccagttggcgtgggctccaagggtgtc
attcccatgaatgccaaggacttggaggaggccctggagatgggtgtggactggtctctc
cgggaaggctatgcctgggcagaggacaaggagcactgtgaggagtatggaaggatgctg
caggctgatcccaataaggtctcctcaagagctaagaaaagaggtttgcctcagctgggg
accctgggagcaggaaaccattatgctgagatccaggtggtggatgacatttataacgag
tatgctgccaggaagatgggcattgatcacaagggacaggtgtgtgtaatgatccacagc
ggcagcagaggcctgggccatcaagtagctacagatgctttagtggctatggagaaagcc
atgaaacgggacaagatcatagttaatgatcgccagttggcatgcgccagaattgcctcc
ccagagggacaggactacctaaagggaatggcagcggctgggaactacgcatgggtcaac
cgctcttccatgactttcctaaccagacaggccttcgctaaagtcttcaacacaacccct
gatgacctagatcttcatgttatctatgatgtgtctcataacattgccaaagtggagcag
catgtggtggatggaaaagagcggaccctgctggtgcacagaaagggatcgactagggct
ttccctcctcatcatcctctcattgctgttgattaccaactgactggacagccagtactg
attggtgggacaatgggaacctgtagctatgttcttactggtactgagcaaggcatgacc
gagacctttggaaccacatgccatggagctggtcgtgcattgtcccgagcaaaatctcga
cgaaacttggacttccaggatgtgttggacaagctggctgacatggggatcgcaatccgt
gttgcttctcccaagctggtcatggaagaagcaccagaatcctataaaaatgtgacagat
gtggttaacacctgccatgctgctggcatcagcaagaaagctattaaattgagacctatc
gctgttattaaaggctag
DBGET
integrated database retrieval system
