Trachemys scripta elegans (red-eared slider): 117881340
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Entry
117881340 CDS
T07347
Symbol
ATG4C
Name
(RefSeq) cysteine protease ATG4C isoform X1
KO
K08342
cysteine protease ATG4 [EC:3.4.22.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04136
Autophagy - other
tst04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117881340 (ATG4C)
04136 Autophagy - other
117881340 (ATG4C)
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
tst01002
]
117881340 (ATG4C)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tst04131
]
117881340 (ATG4C)
03029 Mitochondrial biogenesis [BR:
tst03029
]
117881340 (ATG4C)
Peptidases and inhibitors [BR:
tst01002
]
Cysteine peptidases
Family C54: Aut2 peptidase family
117881340 (ATG4C)
Membrane trafficking [BR:
tst04131
]
Autophagy
Autophagosome formation proteins
Atg8 conjugation proteins
117881340 (ATG4C)
Mitochondrial biogenesis [BR:
tst03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
117881340 (ATG4C)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_C54
ATG4_LIR
Motif
Other DBs
NCBI-GeneID:
117881340
NCBI-ProteinID:
XP_034634360
LinkDB
All DBs
Position
8:complement(92045821..92114089)
Genome browser
AA seq
459 aa
AA seq
DB search
MEATGTDEVEKLKSKFMSAWHNMKYSWVLKTKTYFSRNSAVFLLGKCYHFKSDEPSELSP
DGSCLDIVDKVISGNVEEFRKDFISRIWLTYREDFPQIKESAFTTDCGWSCTLRTGQMLL
AQGLVLHFLGRDWTWPGALIIENSDSESWTSHTVKKLTASFEASLTGERELKVLSNDHKE
ALKRDCDDSEMRDEVYHRKIISWFGDSPPASFGLHQLIEYGKKSGKTAGDWYGPAVVAHI
LRKAVEEARDPELQGITIYVAQDCTVYSLDVVDRQCSSMGSEKADMKAVIILVPVRLGGE
RTNMDYLEFVKGILSLEYCVGVIGGKPKQSYYFAGFQDDSLIYMDPHYCQSFVDVSIKDF
PLESFHCPSPKKMSFKNMDPSCTIGFYCRNMQDFERISEEITKMLKSSSKEKYPLFTFVK
GRSRDYDFASSPLHEENDLFSEEEKKRLKRFSTEEFVLL
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
atggaggccacagggacagatgaagtggaaaagctaaaatccaagtttatgtctgcatgg
cacaacatgaaatacagttgggtattgaaaacaaaaacttactttagcagaaattctgct
gtcttcttgctgggaaaatgttaccatttcaagtctgatgaacccagtgaactctctcca
gatggatcctgcttggatatagtcgacaaagtcatttctggaaacgtagaagagtttcgt
aaagattttatttctagaatatggttgacttacagagaggattttcctcagataaaagaa
tctgctttcacaacagactgcggttggagttgtacactgagaactggccagatgctgcta
gctcaagggcttgtgcttcattttcttggtagagactggacctggccgggtgcactgatc
attgaaaattcagactctgaatcatggacaagccacacagtaaaaaagctgactgcatca
tttgaagcatcacttacgggggagagagaactcaaggtcctgtcaaacgatcataaggaa
gcactaaagagagactgtgatgacagtgaaatgagagatgaagtttatcatagaaaaata
atctcttggtttggagattctccacccgcatcttttggcttgcatcagctaatagaatat
ggaaagaagtctgggaaaacagctggagactggtatgggcctgctgtagtagcacacatt
ttaagaaaagctgttgaagaagcaagagaccctgagttacaagggataactatctacgtt
gctcaggactgtacagtttacagtttggatgttgttgatagacagtgctcttctatgggc
tctgaaaaagcagatatgaaagctgtaattatattagttcctgtaagacttggtggagag
agaaccaacatggactacttggagtttgtaaagggaattttgagtcttgaatactgtgtc
ggtgttattggtgggaaacctaagcagtcatattactttgcaggatttcaagatgacagt
ttgatttacatggatcctcattactgccaatcttttgtagatgtcagcataaaggatttc
cctcttgagtcatttcactgtccttcccccaaaaagatgtcattcaaaaacatggatcct
agctgtacaataggattttattgtagaaacatgcaagactttgaaagaatttctgaagaa
ataactaagatgctgaaatcttcatctaaggagaaatatcccttgtttacttttgtaaag
ggtcgttctagagactatgactttgcctccagtccactccatgaagaaaatgaccttttc
tccgaggaggaaaagaaaagattaaaaagatttagtacagaagagtttgtcttgctttaa
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