Trachemys scripta elegans (red-eared slider): 117881608
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Entry
117881608 CDS
T07347
Name
(RefSeq) 2-5A-dependent ribonuclease-like
KO
K01165
ribonuclease L
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04621
NOD-like receptor signaling pathway
tst05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117881608
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117881608
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_5
Ank_3
Ribonuc_2-5A
Pkinase
PK_Tyr_Ser-Thr
Kdo
ABC1
Haspin_kinase
DUF5764
aGPT-Pplase3
DUF3384
SpoVR
TCAD9
Dermcidin
Motif
Other DBs
NCBI-GeneID:
117881608
NCBI-ProteinID:
XP_034634953
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Position
8:complement(54249802..54270437)
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AA seq
731 aa
AA seq
DB search
MEATGNSQEEVSTSRNETAADKPSLLNNAVRNHSLETVRQLLEEGADVNSKVEGGWTPLH
SAVQDDQEEIIDLLLEKGADPCARKKNGATPFLVAGIVGNVRLLELFLSKGSEINEYDDN
GFTAFMEAAWYGNEDALRFLYSNGADVNLRRVVNEEKRTLNKGGATALMDAAREGHLSVV
NILVSEMKADINICDNQDRNALIHAFLPSDNKTKESILPIVLFLLDCGVDVNRRDEHGKT
TLILAVEMRSLDLVKALLEKNEVDINDADREGKTALMIAVEKNYYEIAKLLCERGARTDL
GDLIGIVNRKYNKKMADLLRQYGAKAGPSQPQDWEPTSKRWGEQLKVLYNMYRPMIGKLK
ILQHNDFRIQRTSQGGIYLGLYDGKEVAVKIFCIGTETAKQEKMCLEQCLTSNHLVKLFG
AEEKKPCLYLCLSLCEKNLEEHLSASENEVNCKGVLKTLFEAVQELHMFGFGHQDLHPCN
ILIDAAGKVRLADFDKSKRLSEGQKDDVIIKDLKALRRLVLYVVTVGKVPFEENYRDDLD
ASCPEDVQDYVEIADLRESLVFPDEGSPVENLLRDLIQHPFFWSKQTRYRFLRDVGNESD
IKTRNTKHHNNQSEILKALNCDEHPLQQWTEQIDKLVLDSMLNPFNNNNKNQNKNKNKKK
QYENYVTDLLKFIRNMGEHFDEKEEKVKEIIKEPSEYFLNLFPELTVYVYKCLRSIQHHR
HFPSPQSLSQL
NT seq
2196 nt
NT seq
+upstream
nt +downstream
nt
atggaggccactggtaacagccaggaggaggtatcgacctccagaaatgaaacagcagca
gacaaaccctctctgctaaacaatgctgtccgaaaccattccctagagacagtccggcag
ctgttggaggaaggagcagatgttaattccaaggtagaaggtggttggacacctctgcac
agcgctgtacaggatgatcaggaagagatcattgatcttctgctggagaagggtgctgat
ccgtgtgctaggaagaaaaacggtgccacgccctttcttgtagcagggatagtgggaaat
gtgagacttttagagctcttcctttctaagggatcagaaatcaatgagtatgatgacaat
ggtttcacagcttttatggaggctgcttggtatgggaatgaagatgccttaagattcttg
tacagtaatggggcagatgtgaatttgcggagggtggttaacgaggagaaaaggacactg
aataaagggggggcaacagccctgatggatgctgccagggagggccacctctcagtcgta
aacattcttgtcagtgagatgaaggctgacattaacatctgtgacaaccaggacagaaat
gctttaatccatgccttccttccaagtgataacaagacaaaggagtcaattctcccgata
gttcttttcctgctggattgtggtgttgatgtgaacagaagagatgaacatgggaaaact
accctcatcctggcagtcgagatgcgaagtctggatttggtgaaagctttattggagaag
aatgaagttgacatcaatgatgctgacagagagggcaaaacagcactgatgatcgctgta
gagaaaaactattatgaaatagcaaagctactgtgtgaaaggggggcaaggactgacctt
ggggaccttattgggattgtcaataggaaatacaataagaaaatggcagatctgcttcgc
cagtacggcgccaaggctggtccaagtcaacctcaagattgggaacccaccagcaaacgc
tggggagagcagctgaaggttctctacaacatgtatcgtcctatgattggaaaacttaaa
atcctccaacataatgatttcaggattcagagaacctcccaagggggcatctacctggga
ctctatgatgggaaagaggtggctgtgaaaatattctgcattggcacagaaactgctaaa
caagagaaaatgtgccttgaacaatgtctgaccagcaaccatttagtaaagctatttggt
gctgaggaaaagaaaccctgcctgtacttgtgcctctcgctctgtgagaagaaccttgaa
gaacacctgagtgcatcagagaatgaagtgaattgcaagggtgttcttaagacactcttt
gaggcagttcaagaactacacatgtttggatttggccatcaggatctacacccatgtaat
attttgatagatgctgctggtaaagttcgcttagcagattttgataagagcaaaagattg
agtgaaggacagaaggatgatgttataatcaaagacctgaaggcgctcagaaggctggtc
ctgtatgttgtaacagtgggtaaggtcccctttgaggaaaattatagagacgatttggat
gcaagttgtccagaggatgtgcaggactatgtggagattgcagaccttagggaaagtctg
gtcttccctgatgaaggaagcccagttgagaacctgctgagagacttgatccaacatccc
tttttctggagcaagcagaccaggtacaggttcctgagagacgttgggaatgagagcgat
atcaaaacacgcaacaccaagcatcacaacaatcagagtgagattctgaaagctttgaat
tgtgatgagcaccctttgcagcagtggactgagcagattgacaaattggttctggacagc
atgttgaaccccttcaacaacaacaacaagaaccagaacaagaacaagaacaagaagaaa
cagtatgaaaactatgtcacggacctactgaagttcatcaggaatatgggcgagcacttt
gacgagaaggaagaaaaggtcaaggaaataatcaaggagccctcggagtatttcctgaac
ctgtttccagaattgacagtttatgtctacaagtgtttacgcagcatacagcatcataga
cattttccaagccctcagagtctttctcagctgtag
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