Trachemys scripta elegans (red-eared slider): 117881609
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Entry
117881609 CDS
T07347
Name
(RefSeq) protocadherin beta-1-like isoform X1
KO
K16494
protocadherin beta
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117881609
Cell adhesion molecules [BR:
tst04515
]
Cadherins
Protocadherins
117881609
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_tail
Cadherin_C_2
Cadherin_CELSR2_9th
TMEM154
Motif
Other DBs
NCBI-GeneID:
117881609
NCBI-ProteinID:
XP_034634954
LinkDB
All DBs
Position
8:37419889..37808423
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AA seq
972 aa
AA seq
DB search
MSVCSFLLRMADKKRRTTIKRQVACLVLFLCMWALRCETVRYSVPEEMESGSFVANVAKD
LGLDPKRLSARRARVVSEGSRQHFQLNSNTGDLFIKEKMDREELCGETDPCMVQFEIILQ
NPLQAYPAEIRVYDINDYSPVFSEKEFILKILETSDPGSRFPLENAQDLDVGNNSLQNYS
ISNNDYFHIYTRVRSDGRKFAELVLDKPLDREEQPEVSLVLTAVDGGSPPRSGTAQIHVI
VLDANDNPPVFSQTIYKSRVLENSPKDYLVVTVSATDLDEGNYGEISYSFSQKSKENSKT
FNINPVTGELRLTGQLDFETIETYELDVRATDGGGLFSHSKVLVEVLDVNDNPPEVKVTS
LTSPIPEDSSPVTVVALFSVRDRDSGNNGKTVCSIEDDLPFSLKTTFKNSYSLVTEYVLD
REKVSEYNITITARDLGTPSLSTEERIAVKISDINDNSPEFSQTSYTMYVRENNGPAVLI
GKVNAFDSDSEQNAKVTYSLLPSEVGGFSLLSYISINSENGNVYALRSMDYEQRKEFQVA
VRAADGGSPPLSSEVIVRVVIIDENDNAPFILYPLQNSSSLANDLVPRSAKAGYLVTKVV
AVDGDSGQNSWLSYHLLKATDPGLFTIASQNGEIRTTRLITDRDTVKQKLIVLVRDSGES
PLSSSATLNIALVDGFSDAYMQFTDVAVEEEENDTLTMYLIISLCLVSFVFFISVIFIII
KLYRRRNYGEKYMSASGNCCGNSNFQNNLVDVTGNGTLSHSYRYEVCLTTGSGNSEFRFL
RPIIPSLPPQHGNAGTDSGKEQDLLTNFDLTTDMKSANQHGIAGTDSGKEQDLLTNLQLN
TDLESANEQAQPNPDWRFSQAQRPGTSGSQNGEEGGAWPNNQFDTEMLQAMILASANEAA
DGNSTLGGGAGTMGLSTRYGPQFTLQHVPDYRQNVYIPGSTATLSNSSGKRDGKSSGSSG
GNKKKSGKKEKK
NT seq
2919 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtgtgttctttcctattaaggatggcggataagaagaggagaacaacaatcaaa
aggcaagtcgcttgtctcgttctatttctttgcatgtgggccctcagatgcgagacggtt
cgctattctgtgcctgaggaaatggaaagtgggtcctttgtggctaatgtagcaaaggat
ctagggctagacccgaagagactgtctgctcgcagggcccgtgtggtttccgaaggcagc
cgccagcatttccagctaaacagcaacactggggacttgtttattaaagagaaaatggac
agagaggaattatgcggggaaacggacccctgtatggtgcaatttgaaataatcctgcaa
aatcccttacaagcctatcccgctgagataagagtttatgatataaatgattattctcca
gtgttctcagaaaaggaatttattttaaaaatcctggaaacgtctgaccctgggtctcgg
tttcccttggaaaatgcccaggatctagatgtgggaaacaacagcctccagaactacagc
attagcaataatgactacttccatatttatacgcgggttcggagtgacggcaggaaattc
gcagagctagtgctggataaaccactggaccgcgaggagcagccagaggtgagtctagtg
ctcacggccgtggatggcggctctcccccgaggtccggcacagcacaaatccatgtcatt
gtcctcgatgccaatgacaatcctcctgtgttctctcagaccatttacaaaagtcgagtt
ctggaaaacagccccaaagattacctggttgtcactgtttctgcaactgatttagatgag
ggaaattatggggaaatatcctattctttcagccagaaatccaaagaaaacagtaaaact
tttaatataaacccagtgacaggggaacttcgactcacaggccaattggattttgaaact
attgaaacatatgagctagatgttcgggccacagatggcggggggctgttttcccactct
aaagtgcttgtggaggtgctggatgtgaatgacaatcccccggaagttaaagtaacgtcc
ctcaccagccccatacctgaggactcctcgcctgtgacagtggtggcgcttttcagtgtc
agagaccgggactctgggaacaatgggaaaacagtctgctccatagaagatgatcttcca
ttttctttgaaaacaactttcaaaaattcctactctctagtgactgaatatgtgcttgac
agagagaaagtatctgagtataacatcaccatcacagccagggatttgggaactcccagt
ctctccactgaggagagaatcgccgtgaaaatatccgacatcaatgacaattccccagag
ttcagtcaaacatcatacactatgtatgtccgagaaaacaacggcccagccgtcttgata
gggaaggtcaatgcttttgattctgactcagaacagaatgccaaagtgacatactctcta
ttgccttctgaggtaggtggcttttcgcttctctcttatatctccataaactcggaaaat
gggaatgtgtacgctctgcgatctatggattatgaacagcgaaaagagttccaggttgca
gtgagagctgcagatggcgggtcccctccactgagctctgaagtcattgtccgagttgtg
ataattgatgaaaatgacaacgcccccttcattttataccctctgcagaacagcagctcc
ctcgctaatgacctggttcccagatcggcgaaggcgggttacctggtgacgaaggtggtg
gctgtggatggagattccggtcagaattcttggctttcctatcatttgttgaaggccact
gacccaggtctatttactatcgcttcccaaaatggtgaaataagaaccacgaggctaata
acagaccgagatacggtgaagcaaaaacttattgtgctagttagggacagcggagaatca
cctctttcttcatctgcaactctaaacatagctctagtggatgggttttcggatgcatac
atgcagtttacagatgtagctgtggaagaggaagagaatgacacattaacgatgtactta
ataatttccttgtgtttagtatcgtttgtcttttttatttcagtgatatttataattatc
aagctttatagaagaaggaattatggagaaaaatacatgtctgcttctggcaattgttgt
ggtaatagcaacttccaaaataatttggtagatgtaacgggtaacggaactctgtctcac
agttatcgttatgaagtctgtttaacaactggatcaggaaacagtgaattcagattcctc
agaccaattatcccctctctcccacctcagcatggcaatgctggaacggactctggaaaa
gaacaggatcttcttactaactttgatctgaccacggacatgaaatcagcgaaccagcat
ggcattgctggaacggactctggaaaagaacaggatcttcttactaacctccagctgaac
acggacctagaatcagcgaacgagcaagcacagcctaacccggactggcgtttctctcag
gcccagagacctggaaccagtggctcccagaatggagaagaaggtggagcttggccaaac
aaccagtttgatacggaaatgcttcaagccatgattctggcatcagcaaatgaagcagct
gatgggaactctacattgggaggaggagccggcactatgggcctcagtaccaggtatggc
ccccagttcacactgcagcacgtccctgactacaggcagaatgtgtacatccccggcagc
actgccaccctctccaactcctcaggtaaacgagatgggaagagctcaggctcttcaggt
ggaaacaagaagaagtctgggaagaaggagaagaagtag
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