Trachemys scripta elegans (red-eared slider): 117881639
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Entry
117881639 CDS
T07347
Symbol
TRIM56
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase TRIM56
KO
K12026
tripartite motif-containing protein 56 [EC:
2.3.2.27
]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tst04121
]
117881639 (TRIM56)
Enzymes [BR:
tst01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117881639 (TRIM56)
Ubiquitin system [BR:
tst04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117881639 (TRIM56)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-B_box
zf-RING_5
BPL_C
PML_CC
ApoLp-III
Crescentin
Motif
Other DBs
NCBI-GeneID:
117881639
NCBI-ProteinID:
XP_034635049
LinkDB
All DBs
Position
8:108935380..108941669
Genome browser
AA seq
683 aa
AA seq
DB search
MALTFMSLQELIKEDFLTCKICYDLYTVPKILPCLHSYCQHCLEPLVRDGALKCPECRLQ
TDVPGGASSLKTNFFINSLLELFQIKHNRDLACTVCSDAQKILTATARCLDCKDFLCQSC
TQGHCCSRLTLHHKVVKLEEFLAGEYDAEMRLLQELCCQDHQQEALRFFCDTCSVPICRD
XRMLDHFQHKVVSMANAVQRERPSVEQLIDSLAGTITCISEQEKAVEETVDKLKTSGENI
KERITRYVDDFIYYLQAQKEAILGELSAFLTQQMESCRLVKEELQSQRDKAISTREFSQR
VLYVGKDYEILHLEGMIRNRIQELQTYIPQKLEGQIPELAIAWDQPEMLSKAALFSLVFP
REQPEGDMGIVFEPDSEASASPSEESEDDPFLPVNLEEDSCPSSEESAPDTPNKNLSCCS
RRSKRPKRVCTFEVDQCCFQVKPNITGIAVLPHAGGILLLDQENDEIKQYSAGGHFQQSI
PLPDSDGVFCGISLCGDVLACSSDSFLFFLTLEGKFLHKLLLRGSESSYAITSYKDSYIA
VSEGTLCSISLYSPSGHCMGRVAPTGYHGGKFLFIAVNYQEEFIVSDFIKKQIVIIGKSG
LILNVLKTSHSLLTKPFSVCVDMSSNIFVVDQLKVIKFSPDGETGEVVLSNQSQQKRPRV
LAVDDDGRLVLVQEDGYVHIYCF
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atggctctaacctttatgtccttacaagaattaatcaaggaggatttcctgacctgtaaa
atctgctatgatctctacacagtgccaaagatccttccatgtctgcacagttactgccag
cattgcctggaaccactagtgagggacggagccctcaagtgtcctgagtgccggctgcaa
acagatgtcccaggaggtgcctcaagtctgaaaaccaacttcttcatcaacagcctcctg
gagttattccagattaaacacaacagggacttggcctgcacagtttgctcagatgcccag
aagatcttgactgccactgcccgttgcctagactgcaaggatttcttgtgccagtcctgc
actcagggccattgctgctcccgtctcactcttcatcacaaggtggtgaagcttgaggag
tttctagctggggaatatgatgctgagatgaggctgcttcaggagctgtgctgccaggac
caccagcaggaagctctgcgattcttctgtgacacctgcagcgttcccatctgcagggac
tgacgtatgctagaccattttcagcacaaggtggtctctatggcaaatgctgtgcagcgg
gaaaggccttctgttgagcagctaattgacagcctggcaggaacgataacatgcatctct
gagcaggaaaaagctgtggaggagacagtagataagttgaaaacatcaggagagaacata
aaggagaggatcactagatatgtggatgactttatctactatctccaggcccagaaggaa
gccattctgggcgagttgtctgcttttctaactcagcaaatggaaagttgtcgcctggtg
aaagaggagctccagagccaaagagataaagcaatcagcaccagggagttctctcaaagg
gtcctctatgtgggaaaggactatgagatcttacacctggagggcatgataaggaatcgg
attcaggagctccagacgtatatcccacagaaactagagggccaaatccctgaattggcc
atagcctgggatcagccggaaatgctgtccaaggcagcactctttagtctagtgtttccc
agggaacagcctgaaggagacatgggaattgtttttgagccagatagcgaggcatctgct
tcccccagtgaggagtctgaggatgacccattcttgcccgtgaacttagaagaagactcc
tgtccaagctctgaagagagtgctcctgacactcccaacaagaacctctcttgttgcagc
agacgcagtaaaaggcctaagcgtgtctgcacttttgaggtagaccagtgctgcttccaa
gtaaagcccaatatcacagggattgctgttctgcctcacgctggtggcattctcctgttg
gatcaggagaatgatgagataaagcagtacagcgctggtgggcactttcagcaatcaata
cctctgccagattcagacggtgtcttctgtggcatttcgctctgtggagacgtcctcgct
tgctcttcagattccttcctcttcttcctgacccttgagggcaagtttctgcacaagttg
ctgctaaggggatccgagtcttcctatgctatcacctcctataaggactcctatattgcc
gtgagtgagggcacactctgctccatctccctttacagcccttcaggacactgcatgggc
agggtggcacccacaggttaccatggggggaagttccttttcattgccgtcaattaccag
gaggaattcattgtctcagatttcatcaagaagcagattgtcatcattgggaagtctggg
ctgatcctcaacgtgctgaaaacctcacactcactgctgacaaagccgttcagtgtatgc
gtggacatgtccagtaacatttttgtggtcgatcagttgaaggtgattaaattttcccca
gatggtgagacgggggaggtagtgttgagcaaccaaagtcagcagaagagacctcgtgtc
cttgctgtggacgatgacgggcgccttgtcctggtgcaagaggatggttacgttcacatt
tattgcttctag
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