Trachemys scripta elegans (red-eared slider): 117881642
Help
Entry
117881642 CDS
T07347
Symbol
RAD50
Name
(RefSeq) DNA repair protein RAD50
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03440
Homologous recombination
tst03450
Non-homologous end-joining
tst04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
117881642 (RAD50)
03450 Non-homologous end-joining
117881642 (RAD50)
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
117881642 (RAD50)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tst03032
]
117881642 (RAD50)
03400 DNA repair and recombination proteins [BR:
tst03400
]
117881642 (RAD50)
DNA replication proteins [BR:
tst03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
117881642 (RAD50)
DNA repair and recombination proteins [BR:
tst03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
117881642 (RAD50)
BRCA1-C complex
117881642 (RAD50)
NHEJ (non-homologous end-joining)
MRX complex
117881642 (RAD50)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
Rad50_zn_hook
AAA_21
AAA_15
SbcC_Walker_B
SMC_N
Crescentin
DUF1664
AAA_29
DUF2703
AAA_13
Motif
Other DBs
NCBI-GeneID:
117881642
NCBI-ProteinID:
XP_034635052
LinkDB
All DBs
Position
8:14859784..14901234
Genome browser
AA seq
1312 aa
AA seq
DB search
MSKIDKMSILGVRSFGVEDKDKQVITFFSPLTILVGPNGAGKTTIIECLKYISTGDFPPG
TKGHSFVHDPKVANETDVRAQIRLQFRDVTGELIAVQRSMVCTQKGKKTEFKTLEGIITR
TKHGEKVSLSSKCAEIDREMISALGVSKSVINNVIFCHQEESNWPLSEGRALKQKFDEIF
SATRYIKALETLRQVRQKQSLRVKECQTELKYLKQNKEKAREIQDHLSNREAQLAASKEN
VKSIENQLDPLKNRLAEIEQNLAKVVRLDNEIKALDSRKRQMEKDNQDLQQKMEKVFQGT
DDQLRDMYQNHQRTVKEKERRLTDCQRELDRASKECQRFNREKSELLVEQGRLQLQADRH
QQDIRTRDSLIQTLAALLELDGFERTPFNERQINSFHKLVKERQEREAETASQLMREFAE
KETMKQKQIDEIRDKKTGLEKTIDLKSDIQNKKQVELKNVKYELNQLEESSDRILELDQE
LIKAERELDKAEKNSNVEALELEVQKLQNEKANLDKVLQKLDQEMEQLNLHTKTITQMDM
LRKDKVDKEEKIRKIKSRHTDELTLLLGYFPNKKQLEDWLHAKTREINQTRDKLAQLNKE
LASAEQNKNHISIELRKKEEQLSNYEDKLFDVCGSQDFDSDLYKLQDEIEKTSKQRAMLA
GATAVYSQFITQLTDEKQSCCPVCQRVFQTESELEDVISDLQSKLRLAPDKLKSTESELK
RREKKRDEMMGLKPIRQTIAELKEKDIPDLRNKLQNVNRDIQRLKSDVEEQETLLGTVMP
EEESAKACLQDITLMERYQTDLRDVERKIAQQANKLQGVDLDRTLIQVSQEKQEKKHLWD
TVTGKIELNQKLKQDQQTQIQQLKSTVNELKAEKLQISSNMQRRQQLEDQTVELSTGVQS
LYREIKEAKDQLFPLEATLEKLQRERVDLINKKNTSNKVTQEKINEIKEKVKNIHDYVKE
IEKYIQGGKEDYKKQKESELDEVKTQLADCEKQKEKISKEMGTIRQDIDTQKIQERWLED
NLTLRKRNDDLKEVEEERKQHLKEMGEMKVPQLKNERQCLVEKLEDFKRNHSLALGRQHG
FEEEIIRFKKELRESQFKDAEEKYREMMIVMRTTELVNRDLDMYYKALDKAIMTFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDADENVSASDKRRNYNYRVVMIKGDTALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSQQR
NFQLLVITHDEDFVELLGRSEYVEKFYRIKKNIDQCSEIVKCSVSSLGSYAH
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtctaagattgataagatgagcatccttggagtgaggagtttcggggtagaggacaaa
gacaaacaagtcatcactttctttagtcctttaaccattttggtggggccaaatggtgca
ggaaaaacgactatcattgaatgccttaaatatatttccactggagatttccctccaggc
accaaaggacactcatttgttcatgatccaaaggttgctaatgaaacagatgtcagagct
cagattcgactgcagtttcgtgatgttactggagagcttatagctgtccagcgatccatg
gtttgtactcagaaaggcaagaaaacagaatttaaaactcttgaaggtatcattaccaga
acaaagcatggggaaaaggtcagtctcagttccaagtgtgcagaaattgatcgagaaatg
atcagcgcccttggtgtttccaaatctgtgattaacaatgtcattttctgtcatcaagaa
gaatccaactggcccttaagtgagggaagggccctgaaacaaaaatttgatgagatcttc
tcagcaacaaggtatattaaagcattggaaactcttcgtcaggtacgtcagaagcaaagc
ttgcgggtaaaagagtgtcagacggaattgaaatatctaaaacagaataaagaaaaagca
cgtgaaattcaagatcatcttagtaatagggaagcccaactggctgcttctaaggaaaat
gtaaaatctattgagaatcaacttgatcctctaaagaaccgtctcgcagaaattgaacag
aatcttgcaaaagtagtgagacttgacaacgagattaaagctctggacagcaggaaaagg
cagatggaaaaagataaccaggatttgcaacagaagatggagaaggtttttcaaggaaca
gatgaccaactaagagatatgtaccagaaccatcagagaacagtaaaagagaaggaaagg
agattaacagactgtcaacgtgagctggatagagcaagcaaagagtgtcagagattcaac
agagagaaatcagaattgcttgttgaacaaggtcgtcttcagctacaagcagatcgtcac
cagcaggacatcagaaccagggattcattaatccagactttggcagcactgttggaatta
gatggttttgaacgaacaccttttaatgaaaggcaaattaacagttttcacaagcttgtg
aaagagagacaagaaagagaagccgaaactgccagtcagttaatgagagaatttgcagaa
aaagaaacaatgaaacaaaaacagatagatgaaataagagataagaaaactggactggaa
aaaaccattgacctgaagtcagacattcaaaataagaaacaggttgaactgaagaatgtg
aaatatgaactgaatcagttggaggagtcttcagacaggattctggaactggatcaggaa
ctcatcaaggctgaacgtgaactagataaggctgagaagaacagcaatgtggaagctctt
gaattggaggtacaaaaacttcagaatgagaaagcaaacctggacaaggttcttcagaaa
ttggatcaggagatggaacagctaaacttgcataccaagacaatcacccaaatggatatg
ttgaggaaagacaaagtggacaaagaggagaagatcagaaaaataaaatctagacatact
gatgaattgaccttattgctgggatattttccaaacaaaaaacagctcgaggattggctt
catgctaaaactagagagattaatcagacaagagacaagcttgcccaacttaacaaagaa
ctagcttcagcagaacaaaataaaaatcatatcagtattgagctaagaaaaaaagaagag
cagttgtccaattatgaagacaaactttttgatgtttgtggaagccaagattttgatagt
gatctatacaaacttcaggatgaaattgaaaagacttcaaagcagcgcgctatgcttgct
ggagccacagcagtttattcacagtttattacacaactgacagatgagaaacagtcatgt
tgcccagtttgtcagagggtctttcaaacagagtcagaactggaagatgtaattagcgat
ctgcagtccaagttacgtcttgctccagataaactgaagtcaacagagtctgagcttaaa
agaagagaaaagaagcgtgatgaaatgatggggcttaaaccaataaggcagaccatagct
gaacttaaagaaaaggacataccagacttaagaaacaagctacagaatgtaaaccgagat
attcagcgcctaaagagtgatgtagaagaacaggaaactctcttaggtacagttatgcct
gaggaggaaagtgccaaagcatgtttacaagatataacacttatggaaaggtaccagact
gatctaagggatgttgaacgaaaaattgcccagcaggccaataagctgcaaggggtagac
ttagatcgaactcttatacaagtaagccaggaaaaacaagaaaaaaaacacctgtgggat
acagttactggtaaaattgagttaaatcaaaaacttaaacaggaccagcagactcagatc
cagcagctaaagagtacagtgaatgaacttaaagcagagaagctacaaatttccagtaat
atgcagcgtcgacaacaactggaggatcagactgtggaattgtccactggggttcagtct
ttatacagagagatcaaagaggcgaaggatcagctatttcctttggaagcaactttagaa
aaacttcagcgagagagagtagatctaatcaacaaaaagaacacaagtaacaaagtaaca
caagagaagataaatgagatcaaagagaaagttaaaaatatccatgactatgtgaaagaa
attgaaaaatatattcagggaggaaaagaagactataaaaagcaaaaagagtctgaactt
gatgaagtaaaaactcaactagctgattgtgagaaacagaaagaaaaaataagtaaagaa
atgggaacaattagacaagacattgatactcagaagatccaggaaagatggctagaggat
aaccttacattaagaaaaagaaatgacgacctaaaagaagttgaagaagaacgaaaacaa
catttgaaggagatgggggaaatgaaagttccacaactgaaaaatgaacgacaatgtctg
gtggagaaattagaggattttaaaagaaatcacagtttggcattaggtcggcagcatgga
tttgaggaagagatcattcggtttaagaaagagcttcgagaatctcagttcaaagatgct
gaggaaaagtacagagaaatgatgattgttatgagaacaacagagctggtaaacagggat
ctagacatgtactacaaggcacttgataaagcaataatgacatttcacagcatgaaaatg
gaagaaatcaacaaaatcattcgtgatctttggcgaagcacctacagagggcaagatatt
gaatatgtagaaattcgttctgatgcagatgaaaatgtttcagcgtctgataaaaggagg
aactacaattatagagtagtaatgataaaaggagatactgctctggacatgcgagggaga
tgcagtgctgggcaaaaggtgcttgcttccctcattattcgtcttgctctggcagaaacg
ttctgtctcaactgtggcattcttgcactggatgagcctaccaccaaccttgatcgagag
aacattgagtctcttgcacatgctctggtggagataataaaaagccgctcacaacagcgc
aactttcagcttcttgtcataacacatgatgaagattttgtggagcttttgggccgttct
gaatacgtggagaaattctacaggataaagaagaacattgaccaatgttctgagattgtg
aagtgcagtgtcagttccttaggatcctatgctcattag
DBGET
integrated database retrieval system
