Trachemys scripta elegans (red-eared slider): 117881707
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Entry
117881707 CDS
T07347
Symbol
PRPF38B
Name
(RefSeq) pre-mRNA-splicing factor 38B isoform X1
KO
K12850
pre-mRNA-splicing factor 38B
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117881707 (PRPF38B)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tst03041
]
117881707 (PRPF38B)
Spliceosome [BR:
tst03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
117881707 (PRPF38B)
Complex C
U4/U6.U5 tri-SnRNP related factors
117881707 (PRPF38B)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP38
Motif
Other DBs
NCBI-GeneID:
117881707
NCBI-ProteinID:
XP_034635181
LinkDB
All DBs
Position
8:complement(67021642..67034531)
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AA seq
545 aa
AA seq
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MANNSPAVGAGNCQHQQAAQHQAGSVPPAQPPLQSGAPKPAASGKQGNVLPLWGNEKTMN
LNPMILTNILSSPYFKVQLYELKTYHEVVDEIYFKVTHVEPWEKGSRKTAGQTGMCGGVR
GVGTGGIVSTAFCLLYKLFTLKLTRKQVMGLITHTDSPYIRALGFMYIRYTQPPTDLWDW
FESFLDDEEDLDVKAGGGCVMTIGEMLRSFLTKLEWFSTLFPRIPVPVQKNIDQQIKTRP
RKIKKDAKEGVEEVDRHAERRRSRSPRRSVSPRKSPRRSRSRSHHREGHGSSSFDRELER
ERERQRLEREAKEKEKERRRSRSTDRALERRRSRSRERHRSRSRSRDRKGDRRDRDRERE
KENERSRKKDRDYDKEKGNERERSRERSKDRKSKGEIEEKRHKDDKDEKKHRDDKKDSKK
DRKHSRSRSRERKHRSRSRSKNTGKHSRSRSKEKLSKHKNESKDKSNKRSRSGSRGRTDS
VEKSRKRDHSPSKERSRKRSRSKERSLKHDYSDSKDHSDKHDRRRSQSTERESQEKQHKN
KDETV
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaatagccccgcggtaggcgccggcaactgccagcatcagcaggcggcccag
caccaggccggatccgtcccgccggcccagccgccgctccagagcggggcccccaaaccg
gcggcctcgggcaagcagggcaacgtgctgccgctgtgggggaacgagaagaccatgaac
ctgaaccccatgatcctcaccaacatcctctcctcgccctacttcaaggtgcagctctac
gagctcaagacctaccacgaggtggtggacgagatctacttcaaggttacacatgttgaa
ccatgggagaaagggagcagaaaaacagcaggccagacagggatgtgcggaggggtgcga
ggtgttggaactggaggaattgtgtctacagctttttgcctgctatacaaattatttact
ctaaaactcactcgtaagcaagtgatgggcctcattacacacacagattctccgtacatt
agggctcttggatttatgtatattaggtacacacagcctcctactgatctatgggactgg
tttgaatcgttccttgatgatgaagaggacctggatgtgaaggcaggtgggggttgtgtt
atgaccattggggagatgcttcgttcctttcttactaagctcgaatggttttcaacattg
tttccaagaattcctgtgccagtccagaaaaacattgatcagcaaataaaaaccagacct
agaaaaatcaagaaggatgccaaggagggagtggaagaagtagaccgacatgcagagcgt
agacgttcaaggtctccaagaaggtctgtgagccctaggaagtctcctagaagatccaga
agtagaagtcatcatcgggaaggccatggatcatctagttttgatagagaactagaacgg
gagcgagaacggcagagattagaacgtgaagctaaggagaaagaaaaagagaggcgaaga
tcacgaagtactgatcgtgcattagaacggaggcgaagcagaagcagagagagacacaga
agccgtagtcgaagtcgtgatagaaagggagatagaagagacagggatagagagcgggag
aaagaaaatgaacgaagcaggaaaaaagatagagactatgacaaggaaaagggtaatgaa
agagagagatcgagggaacggtcaaaagacaggaaaagtaagggtgaaatagaagagaaa
agacacaaagatgacaaggatgaaaagaagcacagggatgataagaaagattccaaaaaa
gacagaaaacatagcagaagccgaagcagggagaggaagcataggagtaggagtagaagt
aagaataccggtaagcacagtagaagcaggagcaaggagaaattaagtaaacataaaaat
gaaagtaaagataaatcaaataaacgaagtagaagtggaagcagaggaagaaccgatagt
gttgaaaagtccagaaaacgagaccacagtcccagcaaagagagatcccgaaagcgtagt
agaagcaaagaacgatcccttaaacatgattacagtgatagcaaggaccattcagacaaa
catgatcgcagaaggagccaaagtacagaacgagagagccaagaaaagcaacataaaaac
aaagatgagactgtgtga
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