Trachemys scripta elegans (red-eared slider): 117881728
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Entry
117881728 CDS
T07347
Name
(RefSeq) 2-5A-dependent ribonuclease-like isoform X1
KO
K01165
ribonuclease L
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04621
NOD-like receptor signaling pathway
tst05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117881728
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117881728
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_5
Ank_3
Ribonuc_2-5A
Pkinase
Kdo
PK_Tyr_Ser-Thr
ANK_LRRK2
TCAD9
Ank_KRIT1
Shigella_OspC
APH
RIO1
Motif
Other DBs
NCBI-GeneID:
117881728
NCBI-ProteinID:
XP_034635235
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All DBs
Position
8:complement(54217291..54243825)
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AA seq
727 aa
AA seq
DB search
MEATGNSQPAAPNGCRNGTAAATASQLHDAIKKGSVKTVRQLLEEGADVNSKVEGGWTPL
HSAVQADQEEIVNLLLEQGADPRARKDNGATPFIIAGIVGNVSLLELFLSKGSEINEKDN
NGFTAFMEAAWYGKEKALKFLYENFSDEKEMDVNLGRMVSTQQRQVYKGGETALMDAARN
GHLSAVKTLVKEMRASVHACDNFGRNALIHALRLPLKKNTIRRQNKNIEQIVSFLLDCGA
DVTGRDESGKTSLILAAERQSQDLVELLLKTGKVDINAMGNDGKTALKIAVEYDHEEIAK
LLCENGARADCSDISAAKENYNNEMVALLLKYGATATNNQPPKDWEPTSKRWGEQLWRLH
SINSPQIGKLSIIFDEYYCIESTSEGGIYLGFHAGKEVAVKRFLLGSDKAKRESMCLSHC
HSNRHMVKLFGTETHGNCQLFCLSLCESNLEDHLSKSAQAVNNHNILKTLLEAVRDLHSL
ELGHGDLHPRNILIDADDKVLADFDKSCSFAEGQRELIIKEDLEALGRLVLYVVTRGEVP
FDGPDGEDVSARCPTDLQGHLEIEDLIRSLVSPHGGNSVQLGDLIHHPFFWTCESRFEFL
VDVGNNPDIEQYNAGSQIVKALNCNKATTEKHFHLWTRKIDQDVLKNMKERRSYKDTVTD
LLRLIRNVGAHYGAKPQWFKEIIQNPSQYFVDRFPDLTFYVYEHLCRVDRAFLKKVLHHI
LKGYNPS
NT seq
2184 nt
NT seq
+upstream
nt +downstream
nt
atggaggccacaggcaacagccagccggcggcaccaaacggctgcagaaatggaacagca
gcagccacagcgtctcaattacatgatgctatcaaaaaaggttcagtaaagacagtccgg
cagctgttggaggaaggtgcagatgtcaattccaaggtagaaggtggttggacacctctg
cacagcgctgtacaggctgatcaggaagagatcgttaaccttctgctggagcaaggtgct
gatccacgtgccagaaaggacaatggtgccacgccctttattatagcaggcatagtgggg
aatgtgagccttttggagctcttcctttctaaggggtcagaaataaatgagaaggataac
aacggcttcacggcctttatggaggctgcttggtatgggaaggagaaggccttgaaattc
ttgtatgagaatttctcggatgagaaagagatggatgtgaatttgggcaggatggtcagt
acacaacaaagacaagtgtacaaaggaggagaaacagccctgatggatgctgccaggaat
ggccacctctcagctgtgaaaaccctcgtgaaagagatgagagccagcgtgcatgcctgt
gataactttggcaggaacgctttgatccatgcattacggctgcctctgaagaagaacacc
atacgtagacaaaacaagaatatagaacaaatagtctcctttctgctggactgtggcgct
gatgttactggaagagatgaaagtgggaagacttcgctcatcctggcagcagagaggcaa
agtcaggatttggtggaattgttactgaagacaggcaaagttgacattaacgccatgggc
aatgatggcaaaacagcactgaagatagctgtggagtacgaccatgaggaaatagccaag
ctgttatgtgagaacggagccagggctgattgtagtgacatttctgcggccaaagagaac
tacaacaatgaaatggtggcgctgctgctcaaatacggtgctacggctactaataatcag
cctcctaaagattgggagcccaccagcaaacgctggggagagcaactatggcgtcttcac
agtataaattcccctcagatcggaaaactcagcatcatatttgatgagtattactgcatt
gagagcacctctgaaggcggcatctacctgggattccatgcagggaaagaggtggctgtg
aagagattccttcttggcagtgataaggctaaacgagaatccatgtgtctcagtcactgc
catagcaacaggcatatggtaaaactttttgggactgagactcatggcaactgccagctc
ttctgcctctctctctgtgagagcaaccttgaggatcatctgagcaaatctgcacaggca
gtcaataatcataacatcctcaagacactcttggaagcagtgagagatctgcactctttg
gaattaggccatggggacctgcacccacgtaacattttgatagatgcggatgataaagtt
cttgcagattttgataagagttgcagttttgctgaaggtcaaagggaacttataatcaaa
gaagacttggaggcactcgggaggttggtcctatatgttgtaacaaggggtgaggtccct
tttgatggacctgatggagaggatgtgtctgcaagatgtccaacagatttgcagggtcac
ttggagattgaagatctcataagaagtttggtctccccccatggaggaaactcagttcag
ttaggagacttgatccaccatccctttttctggacctgtgagagcaggtttgagtttctt
gtggatgttgggaataatccagacatcgaacaatacaatgctgggagccagattgtgaaa
gctttgaattgcaataaggcaacaactgagaagcacttccacctgtggactaggaagatt
gatcaagatgttctgaaaaatatgaaagagagacgctcctataaagatactgtcactgac
ctgttgaggttaatcagaaatgtgggggcgcactatggtgcaaaaccacaatggttcaag
gaaataatccagaacccatcacagtattttgttgaccggtttccagatctgacattttat
gtctatgagcatttgtgccgtgtggacagagctttcctaaagaaggtacttcaccacatc
ctcaaaggctacaatcccagctga
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