Trachemys scripta elegans (red-eared slider): 117881780
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Entry
117881780 CDS
T07347
Symbol
NDC1
Name
(RefSeq) nucleoporin NDC1 isoform X1
KO
K14315
nucleoporin NDC1
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117881780 (NDC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tst03019
]
117881780 (NDC1)
Messenger RNA biogenesis [BR:
tst03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
117881780 (NDC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
117881780
NCBI-ProteinID:
XP_034635355
LinkDB
All DBs
Position
8:96883365..96914961
Genome browser
AA seq
680 aa
AA seq
DB search
MRAGGGGGGEQQALLRQVLGWRVAASIAWSVLLLPLCTAVFISISSIDLFHPIQWISNSF
NDWYTSYVIFCILLMSVVILIISIFNVEFYAVVPSIPCSRLALLGKIIHPRQVIHSVVHA
IMGMLVAWCAAVMTKGKFQFLALPCTVSESLDGAVQHMCLNEYHLFLLLSGAFMGYNYSL
LYLVNNMNYLPFPIIQQYKYLRFRRSLPLLVKRSCVESLYLVRNVCVAYYFFGYIPRAWI
STTMDLNTDSKLHPLDTLTGLLDLSLLYHTWLCGIFLLITWHIAWLLFKIYATEAHHFPV
QPTFAEETDQCLPKILNSNPPLIIKFLALQDLMLLSQYSPVRRQEVFSLSQPGGHPHNWT
AISKECLNLLSDLTQKLIMQQEAAATNGRVKQPSTGELGRSLSSSEATVTEEMAFQTQRS
NVVSRAHMPSLVKSSLLPLKALSTSDLGSSFGSPFSSPALNRKSGILDLNSPWHGSVQSP
HVMRRGPKLWTSSSDLQMNGSHQASFPVISVARVGNEAIQPSFIYTWLQNKQEQVRSFLS
KRVLIMYFFSKHPEASIQAVFSDAQMHIWALEGLSRLVAASFTEDRFGVVQTTLPAILNT
LLTLQEVVDKHFKLPHASSKPPRISGSLMDTSYKTLRFALRASLKTAIYRITTTFGEHLN
AVHVSAEHKKRLQQFLEFKE
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
atgagggcaggcggtggcggtggcggggagcagcaggcgctgctccggcaggttttgggt
tggagagtggctgctagtattgcctggtcagtactactgctacctctgtgtacggcagtc
ttcataagtattagcagcattgacttgtttcatcctatacaatggatttcaaattcattc
aacgattggtatacttcctatgtcatcttttgtatccttcttatgtcagtggtgatactg
ataataagcatcttcaatgttgaattttatgcagttgtgccttctattccctgctctcga
ttagcactgttaggaaagattattcacccacggcaagttatccattcagttgttcatgct
ataatgggaatgctggtggcatggtgtgctgcagttatgactaaggggaagttccagttc
cttgctctaccctgcacagtttcagaaagcttagatggtgctgttcaacacatgtgccta
aatgagtatcacctcttcctcctgctgtctggagctttcatgggctacaattatagtctc
ttgtaccttgttaacaatatgaactatttgccatttccaatcatacagcaatacaagtac
ttacgtttcagaagatctttgcctctgctggttaaacgtagttgtgtggaatcactgtac
ttggttagaaacgtctgtgttgcatattatttttttggttacattccaagagcatggata
agtaccacaatggaccttaatacagatagtaaacttcatcctcttgacacacttactggt
cttctggatctatccttgctctaccatacctggttatgtggtatatttcttctgattact
tggcacattgcatggttactcttcaaaatctatgctacagaggcacatcattttcctgtt
caaccaactttcgctgaagaaacagaccaatgcctgcctaaaatcttaaacagcaaccct
ccccttattataaagttcttggccttacaggacttgatgttactttcccagtattctcct
gtgcgacgacaagaggtcttcagccttagtcagccaggtgggcatcctcacaattggaca
gcaatatcaaaggagtgcttgaatcttttgagtgacttgacacagaagctgattatgcag
caggaagctgcagctacaaatgggagagtgaaacagccatctacaggagaattaggaaga
tctttgagctcttcagaagcaactgttacggaagaaatggccttccagacacagaggtct
aatgtcgtttctagagcccatatgccttccctggttaaatcatccctcttgcctttaaag
gcattgtctacatctgatcttggaagctcttttggttcacctttcagttctcctgctcta
aatcgcaagtctgggattctggatttaaactctccttggcatggatcagtccaaagtcct
catgttatgagaagaggaccaaagctgtggacatcaagttcagatctgcaaatgaatggc
tctcatcaagcgtccttccctgtgatctctgttgcaagagttggtaatgaagcaatacag
ccaagctttatttatacgtggctccagaacaagcaagagcaggttaggagtttcttgtca
aaacgagtgctgataatgtatttcttcagcaagcatccagaggcctcgatccaggctgtc
ttttctgatgcccaaatgcacatttgggcattagaaggtctatcccgtttggttgcggcc
tcatttactgaagaccgatttggagttgtccaaactacgctgccagctattctgaatacc
ttactgactcttcaggaggttgtagataagcatttcaagctgcctcatgcttctagcaaa
cctcccaggatttcgggaagtctgatggatacctcctacaaaacgctacgatttgcgctt
agagcatccctgaaaactgcgatataccggatcactactacttttggagaacatctaaat
gcagttcacgtgtctgcagagcataagaaaagacttcagcagttcttggagttcaaagaa
tag
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