Trachemys scripta elegans (red-eared slider): 117881834
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Entry
117881834 CDS
T07347
Name
(RefSeq) protocadherin beta-16-like
KO
K16494
protocadherin beta
Organism
tst
Trachemys scripta elegans (red-eared slider)
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tst04515
]
117881834
Cell adhesion molecules [BR:
tst04515
]
Cadherins
Protocadherins
117881834
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Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
Motif
Other DBs
NCBI-GeneID:
117881834
NCBI-ProteinID:
XP_034635457
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Position
8:37392058..37399366
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AA seq
864 aa
AA seq
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MAAAALQRGLCFRSDPGMAGGMENRFRKRQVLSFFLCLCVSLGACETIRYSVPEEKKSGS
LLANIAKDLKLDVGKFSSRSARLVSKNTKEYFELNTGSGDVMIKEKIDREELCGQSDPCL
LQFEIVLENPLQLYRIEVQIEDVNDNSPKFSKNEFVFKMPEQIPINTRFPLEGAQDSDIG
TNGIQSYAINPNKYFRLDVQTLDTDGSKYAELILEKQLDREAQAQLMLILTAADGGLPQR
TGTALIRVNVLDNNDNFPQFSQSVYKVQLMENSPRGTLVTKVEASDLDQGSNAEITYSFR
QVPDRFLKLFKLNQSSGEIAVMGLIDYEERSSYEMNIQATDGGGFSSHCKVLVQIEDVND
NTPEVTLSSLTSTIPEDSSPDTVVALFSVRDRDSGDNGRTLCSIQDNVPFALKSTLKNYY
ELVTQKPLDREKVPEYNITITATDRGTPRLTSVKIIRVQLSDINDNPPVFNESSYVMYLK
ENNHPGLLIGTVHAADLDTEQNAKVTYSALPGNIGDLPFSFSISINSENGNVYALQSLDY
EQTRDFQVTVRAADGGSPPLSSEVIVRVVIIDENDNAPFILYPLQNSSSPANDLVPRSAK
AGYLVTKVVAVDGDSGKNSWLSYQLLKATDPSLFTVGLQTGKVKTSRPITSPDAVKQKLI
VLVRDNGEPPRSSTSTLNVLLVDGFSDAYMQLLDVPEEEQQDTLTLYLVISLSFISFIFL
VSVVTIVAIRLYKRRQCREQYIASSRNFYCDPNFPTNPAETSSTGTLPQSYCYEVCLTTG
SGTSEFKFLRPLVPSLPADPRVAGGSIFDSQINSQLKEEKESVREGRASVSEDSIPRSSG
TGCIVNKVIGINENCGQNGWLSYQ
NT seq
2595 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagcagctttgcagagaggcctgtgtttcagatctgacccgggaatggctggc
ggaatggagaatcgcttcaggaaaaggcaagttctgtctttctttctatgtctgtgtgtg
tccctgggggcgtgtgagacgatccgctattctgtgcctgaagagaagaaaagcgggtct
ctacttgctaatattgcaaaggatttgaaattggatgtagggaaattctctagtcgcagt
gctcggctagtttctaaaaacaccaaagagtattttgagctgaacacaggatccggggat
gtgatgataaaggagaaaatagaccgtgaagaactgtgcggacagagcgacccgtgtttg
ctgcaattcgaaattgtgttggaaaatccactgcagctgtaccgaatagaggtgcagatc
gaagatgtgaatgacaattcccctaaattctctaaaaatgaattcgtttttaaaatgccg
gaacagatccccataaatacccgcttccccttggaaggagcccaagattcagacatagga
acaaatggcatccagagctacgcaataaaccccaataagtattttcgtctggatgtacaa
accctggacacagacggcagtaaatacgcggaactgatattagagaaacaattagatcgt
gaggcgcaggcgcagttgatgctgattctcacagctgccgatgggggcctgccacagaga
accggcacagcgctaatacgcgttaatgtgctggacaacaacgataacttcccacagttt
agtcagtcggtgtacaaggtgcagttaatggaaaatagtcctagaggtactttggtcact
aaggtggaagccagtgatttggatcaaggttcaaatgcagaaatcacctattcattcagg
caggtgcctgacagattcctcaagttattcaaattaaatcaatcatctggagaaatcgct
gttatggggttaattgactatgaagaaagaagcagttatgagatgaacatccaagccaca
gatggcggcggtttttcttcacactgcaaagtcctagtgcagatcgaggacgtgaatgac
aacaccccggaagtgacgctgtcatccctcaccagtaccatacccgaggactcctcccct
gacacagtggtggccctgttcagtgtgagagaccgagactccggggacaatggcagaacg
ctttgctccattcaggacaatgtcccttttgctttgaaatcgactctgaagaattattac
gagcttgttacacaaaagcccctggaccgggagaaagtgcctgagtataacataaccatc
acagccacagaccgggggactccgaggctcacctcagtgaagatcatccgagttcagcta
tcggatattaatgacaaccctccggtatttaatgaaagttcatacgtcatgtacctgaag
gagaacaaccacccaggcctgctgattggaactgtccatgctgctgacctagacacagag
cagaatgccaaagtgacgtattcggcattgcctggcaacatcggtgacctccccttctcc
ttctccatctccataaactccgagaacggaaacgtgtacgctctgcagtctctggattat
gagcaaacgagggatttccaggttacagtgagagctgcagatggcggatcccctccactg
agctctgaagtcattgtccgagttgtgataattgatgaaaatgacaacgcccccttcatt
ttataccctctgcagaacagcagctccccagctaatgacctggttcccagatcggcgaag
gcgggttacctggtgacgaaggtggtggctgtggatggagattccggtaagaattcttgg
ctttcctaccagctgctcaaggccacagaccctagtctcttcactgtggggcttcaaacc
gggaaagtaaaaaccagcaggcctataacgagcccagacgctgttaaacagaaacttatc
gtcctggttagagacaacggagagccgcccagatccagcacctcgacgcttaatgtgctt
ctggtggatgggttttcagacgcctacatgcagttactggatgtaccagaagaggagcag
caggacacattaactctgtatctagtaatttctttgtctttcatttcattcatttttctg
gtttctgtggtaacaattgtcgccatccggctatacaagagaaggcagtgccgagagcag
tatattgcatcgtccaggaacttttattgtgaccccaacttccccacaaatcctgcggag
acgagcagcactgggactctgcctcaatcttattgttatgaggtttgcttgacaactggg
tctggcaccagtgaatttaaatttctcaggccgctggtaccgtctctacccgctgacccc
agagttgcaggagggtccatttttgactctcagattaactctcagctaaaggaggagaaa
gaatcggtgagagagggcagagcttctgtctctgaagactccatacccagatcttcaggg
acaggctgtattgttaacaaggtgatagggataaatgagaactgtggtcaaaacggttgg
ctttcctaccaatag
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