Trachemys scripta elegans (red-eared slider): 117882109
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Entry
117882109 CDS
T07347
Name
(RefSeq) LOW QUALITY PROTEIN: FRAS1-related extracellular matrix protein 1-like
KO
K23380
FRAS1-related extracelluar matrix protein 1/2
Organism
tst
Trachemys scripta elegans (red-eared slider)
Pathway
tst04512
ECM-receptor interaction
tst04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tst00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117882109
04518 Integrin signaling
117882109
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
tst04091
]
117882109
Lectins [BR:
tst04091
]
C-Type lectins
Lecticans
117882109
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin_3
Frem_N
Calx-beta
Cadherin_4
Motif
Other DBs
NCBI-GeneID:
117882109
NCBI-ProteinID:
XP_034635982
LinkDB
All DBs
Position
8:93358373..93458847
Genome browser
AA seq
1505 aa
AA seq
DB search
MEAESSFLKLDILIFLVHLGRGEAAKLVLVNKDFSVERGRVVYVTDNELRFNVPKERNPC
KVEVVLNEPVTQRVGKLAPQIFDGHFLPNEVKYIHNGCPLLEEDRVRLRIYRFTELETII
ETFVLHVEIRNPKSSITQFGKSSLDISEFLGISKQVDRSVLTFKYNANGLSMVCTVRITS
SETSLPAFGQFVAEDLIGVEMYPSFTENVWIPVGIKGAIPNTQAQAAFISMFILEIDQFI
LIPLTTAALDAEAGETPKDRLVFSITKCSLEGYITQLEDHTKAITSFTRQDLYDMKIVYQ
PPNITHSERQNYEVEYRAIESAFMSSSPIMVRFSIRCAPRVAWNMGLDLLEVQLYPVTWD
TLQIVGNDKLNAVQLVEEPQHGWITVRGGKGFKFTVKDHKDGIVHFQHGDSDATKDYAIF
RIFDGRHKFPINILPKDDSAPFLMSNIVFQLAEGKTVLIEKHMLMSSDFDSSDDYILCKI
TKPPSAEEIIKTHFPDGPGIPVSTFLQRDVFHGLIYYHHLGGEIFQDSFDFILSDSQEPP
NLSDIQTVMIHVMLVKDQLPEEVPGTTRQLVVKETEIAHITNNHLHFTDTESPDNQLMYL
VTKSCFSPSSPGIYDVVKLIFTDSMKSYKKDPAISDIFHSGYCHVCFPQHAVIHLKVVCM
PPEKESGPDPLFEQFEFSVSDQQGRVVAGLNFNITVMPVDDEAPEIFTNHLTTEEGASFF
ISGENLMVSDLDTRDDLRIQLKKCPQYGHIELYGLIMQEGDMFTLEDLQSYKVRYQHDDS
ETLEDIVIFPATDGFNTADGVLRVQIIPVNDKPPELQAGLESRLECLEGGYVVITTEYLY
ATDADSDDTKLTYMIARAPAHGVIQKRGFMVDKFFQLDVTQRLITYIRTGGEIGHSLCDD
NLTLIVPDGEAGTVDSCCFNKALPPPLPLHTSLPICDLNITVLPINNQRPTIHLGMFTNR
FTFQCIQSELPDYNFFHIIIQKVDFSPYSDGSTYTNSEYQCLCNLYSCWWILTHVTNPTD
DNGITQRAVLCWTTLYPGMNFIQEDVDMSLLWYFHTNILGLKSYDCFQFYVTDGENSCPP
ESFYISIRKVGKGDIVLLTKPVTLTEGDRVTLTTDVLMATDGTSKPEKLLYAVSVPPVHG
QIEYINYPGMPISSYSQLDVVAQKVCYIHDYSHEASKDSFRHKWGAGKIDRFSFVAIDKV
NHGFLVNGQMREEAVEFTIXVKQHDKISPTLQVKESPTTIQNLKDGRLGILITACNLKVT
DVDNKDEDLTFKVQRPPFFGYLENSKTGSYVHSTFTQNDLNQQIIWYIINSSTEVTSDSF
EFQVSDVAGNTMVPEVREMKWSRVELVETCYRVCENVGTVAIKVVRTGQSAEPLFVGIKV
QEVSARVGLDFTHSLASLVQFDPGVSIKSWNIHIKDDGLEENHEVLKIILSVPXNAVLEQ
KNELTVEIIDSRAETHALQTDLWEKLSVKGLIQSQMKTVERLPMTSIDSRSGPKCPMWIK
DIKED
NT seq
4518 nt
NT seq
+upstream
nt +downstream
nt
atggaagctgagagtagttttctgaagttggatattctgatatttctggtgcatcttgga
cgtggggaagcagcaaaacttgtcttagtaaataaagacttcagtgttgaaaggggacgg
gtggtgtatgtgactgataatgaattacgttttaatgtccccaaagagaggaacccttgt
aaggtagaggtggttttaaatgagccagttacacaaagagtggggaaacttgcacctcag
atatttgatggccatttcttgcccaatgaagtaaaatatattcataatggctgcccactt
ctggaagaggaccgcgtgaggctgcgaatttacaggtttactgaactggagaccataatc
gagacttttgttcttcatgtagagatcaggaatccaaaatcaagtattactcagtttgga
aaaagctctctagacatttctgagtttcttggcatatctaagcaagtggacagaagtgtc
ttgactttcaagtacaatgctaatgggctaagtatggtctgcaccgttaggatcacgtct
tctgagacctcgcttcctgcttttggccagtttgtagcagaggatctcatcggagtggaa
atgtacccaagcttcacagaaaatgtttggattcctgtggggataaagggagccatccca
aatacacaggcccaagctgcatttatatccatgttcatcttggagattgatcagtttatt
cttatcccacttacaacagcagctctagatgctgaagctggagaaaccccaaaagacaga
ttagtgttcagcattaccaaatgctcactagaggggtatattacccaactggaggaccac
accaaggccattacatctttcactcggcaggatttatacgacatgaagattgtctatcag
ccacccaacatcactcattctgagagacagaactatgaggttgagtatcgagcaattgaa
agtgccttcatgagcagttctcctatcatggtccgtttttcaataagatgtgctccaagg
gttgcatggaacatggggcttgacttactggaagttcagttatatccagttacctgggat
actcttcagattgtgggcaatgataaacttaatgctgttcagctggtggaagaaccacag
catggatggatcacagttcgaggaggcaaaggcttcaaattcacagttaaagatcacaaa
gatggaattgttcattttcagcatggtgatagtgatgcaaccaaggactatgcaatcttc
agaatctttgatggaaggcacaagtttccgattaacatcctccctaaagatgacagtgca
ccattcctgatgagcaacattgtctttcagctggcagaagggaagacagtcctcatagaa
aagcatatgttgatgtcgtctgattttgactcaagtgatgattatattctctgcaagata
accaagccacccagtgctgaagagattatcaagacacactttccagatggaccaggtatt
cctgtgtcaaccttcttgcaaagagatgtcttccatggcctcatttactatcaccatctt
ggaggagagatttttcaagactcatttgatttcatcttatctgacagtcaggaacctcct
aacctttcagatattcaaactgtcatgattcatgttatgctggtgaaagaccagttgcca
gaggaagttcctgggactacaagacaacttgttgtcaaagaaactgagattgcacacatc
acaaacaatcacctccactttacagacaccgagtccccagataatcagcttatgtacctg
gttactaaatcatgtttctctccctcttctcctggaatttatgatgtggtgaagctaatt
ttcacagacagcatgaaaagttataaaaaagatcctgctatttctgacatctttcactca
ggatactgtcatgtctgtttcccacagcatgctgtaatacatttaaaagtggtgtgcatg
cccccagagaaagagagtggtcctgacccgctgtttgaacagtttgagttttctgttagt
gaccagcagggaagagtagtggctggactcaactttaacatcacagtgatgcctgtggat
gatgaagcacctgagattttcaccaatcatctaacaacagaggaaggtgccagtttcttc
atctctggggagaatctaatggtgtcagacttggacaccagggatgatcttcgaatccag
ctgaagaaatgtcctcaatatgggcacattgaactgtatggactcattatgcaggaagga
gatatgtttacccttgaggatttgcagtcttacaaagtcaggtaccagcatgatgattca
gaaacccttgaagatatagtcatatttccagcaacagatggatttaacactgcagatgga
gtgttaagagtgcagattataccagttaatgataagcccccagagctacaggcaggatta
gaatcaagactggagtgtctggagggaggatacgttgttatcaccacagaatacctttat
gcaacagatgctgatagcgatgacacaaaattgacatacatgattgctcgtgctccagcg
catggggtgattcaaaagagaggattcatggtggataaattcttccagctggatgtcact
cagagattgatcacttacatacgtacgggaggtgaaataggacatagcctttgtgacgac
aacttgaccctcattgtcccagatggagaggctggtacagtggatagttgttgttttaat
aaagctctccctccaccattacctcttcacaccagtctcccaatctgtgatctgaacatc
acagtcctccccatcaacaaccaacgtcccaccattcatctgggtatgtttactaaccgt
ttcacatttcaatgtattcaatctgaactaccggactataattttttccacattataatt
cagaaggtagatttctcgccctactctgatggaagcacttacaccaacagtgagtaccag
tgtttgtgcaacctttactcttgttggtggatacttactcacgtgactaatcctactgat
gacaatgggattacccagagagccgtgttatgttggaccactctgtatcctggaatgaat
ttcattcaagaggatgtggacatgagcctcctctggtatttccatactaacatcctgggt
ctaaagagttatgattgttttcagttttacgtgacagatggggagaacagctgcccaccg
gaaagcttctacatctccattagaaaagtgggcaaaggggacattgttctactcaccaaa
cctgtaactttaacagagggtgacagggtgaccttgacgacagatgttcttatggcaaca
gatggcactagcaaacccgagaagctgctgtatgccgtctctgtgccacctgtgcacggt
cagattgagtacatcaattatcccggcatgcccatttccagttacagccagttggatgtg
gtagcccagaaggtctgctacattcatgactatagccatgaggctagtaaggattcattc
agacacaaatggggtgctgggaaaattgatagattttcatttgtagctattgacaaagtc
aatcatggttttctggtcaatgggcaaatgagagaagaggcagtggaatttacaatatag
gtcaagcaacatgacaaaatctctccaacactccaagtgaaagaaagtccgaccaccata
cagaacctgaaagatggcaggcttggaattctgattacggcttgcaatttgaaagtcaca
gatgttgacaacaaagatgaagatctcaccttcaaagttcagcggcctcctttctttggg
tatctggaaaactcaaaaacaggtagttatgtacacagtacttttacccagaatgattta
aaccagcagatcatctggtacatcataaattcctccactgaagtgacttcagatagcttt
gaatttcaagtatcagacgtggcaggaaatacaatggttccagaagtacgtgaaatgaaa
tggtccagagttgaactggtggaaacttgctatcgtgtctgtgaaaatgttgggactgtt
gccattaaggtggtaaggacaggacagagcgcagagccattatttgttggtattaaggtc
caagaggtttcagctagagttggcttagacttcactcacagtcttgcaagtttagtgcag
tttgatcctggtgtttccataaagtcttggaacatccacattaaagatgatggcctggag
gaaaaccatgaagtgttaaaaataatactgagcgtgccttaaaatgctgttctggagcag
aagaatgaactgactgtagaaattatagattcaagggcagaaacccatgctctacagact
gacctgtgggagaaactgtccgtcaaaggcctgatccaaagccaaatgaagacagtagaa
agactcccaatgacttcaatagattctagatcaggtcccaaatgcccaatgtggataaaa
gatattaaagaggattga
DBGET
integrated database retrieval system
